Wall clock time and date at job start Mon Mar 30 2020 06:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86801 * 120.00201 * 2 1 4 4 H 1.48494 * 109.47544 * 266.76346 * 3 2 1 5 5 H 1.48505 * 109.46818 * 146.76183 * 3 2 1 6 6 H 1.48502 * 109.46777 * 26.76698 * 3 2 1 7 7 C 1.39942 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00259 * 161.65940 * 7 2 1 9 9 C 1.41401 * 120.00010 * 341.65061 * 7 2 1 10 10 C 1.40726 * 120.24403 * 336.15139 * 9 7 2 11 11 C 1.37593 * 119.74693 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24785 * 0.02562 * 11 10 9 13 13 C 1.38617 * 120.50116 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.24517 * 359.67445 * 13 12 11 15 15 C 1.50703 * 120.12646 * 180.30098 * 14 13 12 16 16 C 1.52994 * 109.46932 * 265.29697 * 15 14 13 17 17 F 1.39900 * 110.80669 * 303.62772 * 16 15 14 18 18 C 1.54815 * 110.90321 * 179.97438 * 16 15 14 19 19 C 1.54100 * 104.18556 * 220.91988 * 18 16 15 20 20 O 1.43735 * 107.29877 * 357.97462 * 19 18 16 21 21 C 1.44389 * 106.97246 * 26.51287 * 20 19 18 22 22 H 0.97002 * 119.99430 * 359.97438 * 1 2 3 23 23 H 1.08008 * 120.12729 * 359.97438 * 10 9 7 24 24 H 1.08008 * 119.87709 * 179.97438 * 11 10 9 25 25 H 1.08005 * 119.74663 * 179.97438 * 12 11 10 26 26 H 1.08002 * 119.87314 * 179.97438 * 13 12 11 27 27 H 1.09001 * 109.47185 * 25.30215 * 15 14 13 28 28 H 1.09008 * 109.46702 * 145.29561 * 15 14 13 29 29 H 1.08992 * 110.49410 * 339.60015 * 18 16 15 30 30 H 1.09001 * 110.48202 * 102.11721 * 18 16 15 31 31 H 1.09006 * 109.87506 * 117.40245 * 19 18 16 32 32 H 1.08998 * 109.88285 * 238.39695 * 19 18 16 33 33 H 1.09003 * 110.61522 * 201.44396 * 21 20 19 34 34 H 1.08995 * 110.62284 * 78.44261 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.5583 2.0069 -1.3977 5 1 3.5040 1.4608 0.7674 6 1 1.4072 2.6714 0.6306 7 6 2.0079 -1.2120 -0.0005 8 1 3.0468 -1.2357 -0.2949 9 6 1.3548 -2.4055 0.3844 10 6 0.2229 -2.3566 1.2193 11 6 -0.4044 -3.5244 1.5880 12 6 0.0750 -4.7462 1.1406 13 6 1.1897 -4.8064 0.3188 14 6 1.8293 -3.6506 -0.0676 15 6 3.0369 -3.7187 -0.9666 16 6 4.3078 -3.7107 -0.1149 17 9 4.3433 -2.5845 0.7143 18 6 5.5711 -3.7805 -1.0071 19 6 6.5082 -4.7491 -0.2598 20 8 5.8437 -5.1345 0.9551 21 6 4.4249 -5.0138 0.7161 22 1 -0.4849 0.8401 0.0004 23 1 -0.1514 -1.4061 1.5699 24 1 -1.2730 -3.4894 2.2290 25 1 -0.4235 -5.6578 1.4354 26 1 1.5546 -5.7635 -0.0234 27 1 3.0000 -4.6350 -1.5558 28 1 3.0416 -2.8573 -1.6346 29 1 5.3214 -4.1750 -1.9920 30 1 6.0297 -2.7957 -1.0966 31 1 6.6975 -5.6294 -0.8741 32 1 7.4490 -4.2499 -0.0280 33 1 3.8838 -4.9185 1.6576 34 1 4.0577 -5.8671 0.1459 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261201546.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:07 Heat of formation + Delta-G solvation = -84.054858 kcal Electronic energy + Delta-G solvation = -18783.955907 eV Core-core repulsion = 15788.422038 eV Total energy + Delta-G solvation = -2995.533868 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.88799 -38.77422 -37.57928 -33.65476 -33.11429 -30.61590 -29.54293 -28.42649 -25.79586 -24.81268 -22.49678 -20.92004 -20.50149 -19.37100 -17.13837 -16.47687 -15.95761 -15.36256 -15.21025 -14.60713 -14.49915 -13.92073 -13.72872 -13.47247 -13.14061 -12.58620 -12.43568 -11.85191 -11.65029 -11.49112 -11.28412 -11.16294 -11.06910 -11.02476 -10.88840 -10.49269 -10.27775 -9.98432 -9.48631 -9.46366 -9.21474 -9.07949 -7.35806 -7.31691 -6.74523 -4.30553 2.79411 2.97140 3.08740 3.14165 3.27732 3.96114 4.07986 4.59017 4.65409 4.90796 4.96248 5.06211 5.32287 5.53927 5.72645 5.76768 5.81817 5.92901 6.05394 6.11880 6.22676 6.28564 6.48792 6.56145 6.62258 6.87780 6.99248 7.12735 7.29054 7.41291 7.64871 7.90897 8.09184 8.13124 8.31930 8.67708 8.93522 9.01613 10.19394 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.009759 C = 0.007002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.462427 B = 2868.419317 C = 3997.756284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.075 3.925 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.259 1.259 6 H -0.277 1.277 7 C -0.450 4.450 8 H 0.089 0.911 9 C 0.126 3.874 10 C -0.165 4.165 11 C -0.105 4.105 12 C -0.247 4.247 13 C -0.085 4.085 14 C -0.209 4.209 15 C -0.063 4.063 16 C 0.099 3.901 17 F -0.181 7.181 18 C -0.181 4.181 19 C 0.048 3.952 20 O -0.379 6.379 21 C 0.035 3.965 22 H 0.279 0.721 23 H 0.117 0.883 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.249 -4.731 -2.436 8.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.195 1.195 5 H -0.183 1.183 6 H -0.202 1.202 7 C -0.479 4.479 8 H 0.107 0.893 9 C 0.123 3.877 10 C -0.184 4.184 11 C -0.124 4.124 12 C -0.267 4.267 13 C -0.104 4.104 14 C -0.211 4.211 15 C -0.100 4.100 16 C 0.080 3.920 17 F -0.161 7.161 18 C -0.219 4.219 19 C -0.029 4.029 20 O -0.298 6.298 21 C -0.041 4.041 22 H 0.090 0.910 23 H 0.135 0.865 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.124 0.876 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.153 -4.598 -2.237 8.793 hybrid contribution 0.099 0.940 -0.178 0.962 sum 7.252 -3.657 -2.415 8.473 Atomic orbital electron populations 1.69847 1.07635 1.29149 1.35114 1.25963 0.94626 1.01404 0.92282 0.86426 0.80918 0.80770 0.79323 1.19520 1.18264 1.20229 1.19806 0.98720 0.90878 1.38493 0.89331 1.17385 0.90583 0.91425 0.88275 1.21353 0.99266 0.96819 1.00985 1.20681 0.98547 0.93442 0.99729 1.20298 1.01659 0.95997 1.08705 1.20335 0.96123 0.95572 0.98340 1.19348 1.01133 0.93749 1.06829 1.20593 0.90758 1.02161 0.96511 1.22346 0.95982 0.84028 0.89605 1.92908 1.97326 1.52496 1.73357 1.23611 0.96240 1.01899 1.00152 1.23115 0.96397 0.96934 0.86471 1.88874 1.18344 1.88578 1.33968 1.24163 0.81987 0.96076 1.01905 0.90984 0.86490 0.89683 0.89745 0.89727 0.91764 0.90099 0.89211 0.89350 0.92447 0.89978 0.87597 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.41 10.95 55.55 0.61 -19.80 16 2 C 0.08 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.90 18.93 29.60 -169.99 -5.03 13.89 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.45 -11.66 7.51 -37.74 -0.28 -11.95 16 8 H 0.09 2.24 5.23 -52.48 -0.27 1.97 16 9 C 0.13 3.27 5.36 -106.83 -0.57 2.70 16 10 C -0.16 -4.31 8.70 -38.88 -0.34 -4.65 16 11 C -0.11 -2.51 10.02 -39.66 -0.40 -2.91 16 12 C -0.25 -5.53 10.05 -39.29 -0.39 -5.92 16 13 C -0.09 -1.85 9.24 -39.66 -0.37 -2.22 16 14 C -0.21 -4.79 4.72 -103.91 -0.49 -5.29 16 15 C -0.06 -1.20 4.08 -27.88 -0.11 -1.31 16 16 C 0.10 1.78 1.33 -88.61 -0.12 1.67 16 17 F -0.18 -3.97 14.01 2.25 0.03 -3.94 16 18 C -0.18 -2.54 6.42 -25.20 -0.16 -2.70 16 19 C 0.05 0.63 7.70 37.73 0.29 0.92 16 20 O -0.38 -6.36 11.52 -35.23 -0.41 -6.77 16 21 C 0.04 0.60 6.22 38.21 0.24 0.84 16 22 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 23 H 0.12 3.17 6.14 -52.48 -0.32 2.85 16 24 H 0.08 1.82 8.06 -52.48 -0.42 1.40 16 25 H 0.08 1.68 8.06 -52.48 -0.42 1.26 16 26 H 0.08 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.06 1.05 8.00 -51.93 -0.42 0.63 16 28 H 0.08 1.62 7.03 -51.92 -0.36 1.26 16 29 H 0.09 1.06 7.86 -51.93 -0.41 0.65 16 30 H 0.09 1.21 8.13 -51.93 -0.42 0.79 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 34 H 0.07 1.09 8.01 -51.93 -0.42 0.67 16 LS Contribution 281.17 15.07 4.24 4.24 Total: -1.00 -28.13 281.17 -7.65 -35.78 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.29 Total: 5.62 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -2.80 Total: -29.03 kcal Atomic # 7 Polarization: -20.41 SS G_CDS: 0.61 Total: -19.80 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.41 Total: -6.77 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.03 Total: -3.94 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.13 -7.65 -35.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261201546.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.274 kcal (2) G-P(sol) polarization free energy of solvation -28.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds