Wall clock time and date at job start Mon Mar 30 2020 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86801 * 120.00201 * 2 1 4 4 H 1.48494 * 109.47544 * 266.76346 * 3 2 1 5 5 H 1.48505 * 109.46818 * 146.76183 * 3 2 1 6 6 H 1.48502 * 109.46777 * 26.76698 * 3 2 1 7 7 C 1.39942 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00259 * 161.65940 * 7 2 1 9 9 C 1.41401 * 120.00010 * 341.65061 * 7 2 1 10 10 C 1.40726 * 120.24403 * 336.15139 * 9 7 2 11 11 C 1.37593 * 119.74693 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24785 * 0.02562 * 11 10 9 13 13 C 1.38617 * 120.50116 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.24517 * 359.67445 * 13 12 11 15 15 C 1.50703 * 120.12646 * 180.30098 * 14 13 12 16 16 C 1.52994 * 109.46932 * 265.29697 * 15 14 13 17 17 F 1.39900 * 110.80669 * 303.62772 * 16 15 14 18 18 C 1.54815 * 110.90321 * 179.97438 * 16 15 14 19 19 C 1.54100 * 104.18556 * 220.91988 * 18 16 15 20 20 O 1.43735 * 107.29877 * 357.97462 * 19 18 16 21 21 C 1.44389 * 106.97246 * 26.51287 * 20 19 18 22 22 H 0.97002 * 119.99430 * 359.97438 * 1 2 3 23 23 H 1.08008 * 120.12729 * 359.97438 * 10 9 7 24 24 H 1.08008 * 119.87709 * 179.97438 * 11 10 9 25 25 H 1.08005 * 119.74663 * 179.97438 * 12 11 10 26 26 H 1.08002 * 119.87314 * 179.97438 * 13 12 11 27 27 H 1.09001 * 109.47185 * 25.30215 * 15 14 13 28 28 H 1.09008 * 109.46702 * 145.29561 * 15 14 13 29 29 H 1.08992 * 110.49410 * 339.60015 * 18 16 15 30 30 H 1.09001 * 110.48202 * 102.11721 * 18 16 15 31 31 H 1.09006 * 109.87506 * 117.40245 * 19 18 16 32 32 H 1.08998 * 109.88285 * 238.39695 * 19 18 16 33 33 H 1.09003 * 110.61522 * 201.44396 * 21 20 19 34 34 H 1.08995 * 110.62284 * 78.44261 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.5583 2.0069 -1.3977 5 1 3.5040 1.4608 0.7674 6 1 1.4072 2.6714 0.6306 7 6 2.0079 -1.2120 -0.0005 8 1 3.0468 -1.2357 -0.2949 9 6 1.3548 -2.4055 0.3844 10 6 0.2229 -2.3566 1.2193 11 6 -0.4044 -3.5244 1.5880 12 6 0.0750 -4.7462 1.1406 13 6 1.1897 -4.8064 0.3188 14 6 1.8293 -3.6506 -0.0676 15 6 3.0369 -3.7187 -0.9666 16 6 4.3078 -3.7107 -0.1149 17 9 4.3433 -2.5845 0.7143 18 6 5.5711 -3.7805 -1.0071 19 6 6.5082 -4.7491 -0.2598 20 8 5.8437 -5.1345 0.9551 21 6 4.4249 -5.0138 0.7161 22 1 -0.4849 0.8401 0.0004 23 1 -0.1514 -1.4061 1.5699 24 1 -1.2730 -3.4894 2.2290 25 1 -0.4235 -5.6578 1.4354 26 1 1.5546 -5.7635 -0.0234 27 1 3.0000 -4.6350 -1.5558 28 1 3.0416 -2.8573 -1.6346 29 1 5.3214 -4.1750 -1.9920 30 1 6.0297 -2.7957 -1.0966 31 1 6.6975 -5.6294 -0.8741 32 1 7.4490 -4.2499 -0.0280 33 1 3.8838 -4.9185 1.6576 34 1 4.0577 -5.8671 0.1459 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261201546.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:06 Heat of formation + Delta-G solvation = -99.219643 kcal Electronic energy + Delta-G solvation = -18784.613501 eV Core-core repulsion = 15788.422038 eV Total energy + Delta-G solvation = -2996.191463 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.43061 -40.07193 -39.29298 -35.50036 -34.62092 -32.01175 -31.33838 -29.84057 -27.45752 -26.52507 -23.67807 -22.76061 -21.95300 -20.99296 -19.00051 -17.77820 -17.45001 -16.91912 -16.54869 -16.22711 -15.91184 -15.51672 -15.38915 -15.00866 -14.64122 -14.35732 -13.75848 -13.51940 -13.39669 -12.89218 -12.82712 -12.75686 -12.62442 -12.54779 -12.30493 -12.16508 -11.73374 -11.53711 -11.25889 -11.03559 -10.94524 -10.54870 -9.22440 -9.13592 -8.59491 -6.23052 1.00852 1.15122 1.35804 1.46380 1.55271 2.20921 2.77634 2.90372 3.37446 3.60005 3.72258 3.79775 4.04080 4.17713 4.29124 4.48659 4.54469 4.62530 4.71136 4.73498 4.82045 4.85977 4.89772 5.06257 5.16139 5.22296 5.34728 5.41754 5.58240 5.81213 5.84111 6.07767 6.24393 6.25618 6.46300 6.79137 7.03860 7.14692 8.36475 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.009759 C = 0.007002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.462427 B = 2868.419317 C = 3997.756284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.033 3.967 3 Si 0.966 3.034 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.270 1.270 7 C -0.476 4.476 8 H 0.087 0.913 9 C 0.093 3.907 10 C -0.201 4.201 11 C -0.116 4.116 12 C -0.247 4.247 13 C -0.088 4.088 14 C -0.210 4.210 15 C -0.059 4.059 16 C 0.084 3.916 17 F -0.211 7.211 18 C -0.172 4.172 19 C 0.044 3.956 20 O -0.400 6.400 21 C 0.041 3.959 22 H 0.284 0.716 23 H 0.094 0.906 24 H 0.101 0.899 25 H 0.115 0.885 26 H 0.124 0.876 27 H 0.100 0.900 28 H 0.065 0.935 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.643 -6.433 -3.628 11.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.181 4.181 3 Si 0.788 3.212 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.195 1.195 7 C -0.505 4.505 8 H 0.104 0.896 9 C 0.091 3.909 10 C -0.221 4.221 11 C -0.135 4.135 12 C -0.266 4.266 13 C -0.106 4.106 14 C -0.211 4.211 15 C -0.097 4.097 16 C 0.066 3.934 17 F -0.192 7.192 18 C -0.210 4.210 19 C -0.032 4.032 20 O -0.319 6.319 21 C -0.036 4.036 22 H 0.094 0.906 23 H 0.112 0.888 24 H 0.119 0.881 25 H 0.133 0.867 26 H 0.142 0.858 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.136 0.864 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.548 -6.310 -3.435 11.166 hybrid contribution -0.350 1.316 0.207 1.378 sum 8.198 -4.993 -3.229 10.127 Atomic orbital electron populations 1.69911 1.08881 1.30083 1.36386 1.26717 0.95320 1.04358 0.91744 0.85447 0.79170 0.76922 0.79676 1.18261 1.18958 1.19450 1.19965 0.98756 0.91875 1.39935 0.89551 1.17771 0.91129 0.93052 0.88979 1.21340 1.00895 0.96869 1.02964 1.20940 0.99023 0.93515 0.99989 1.20728 1.01707 0.96376 1.07810 1.20765 0.95480 0.96823 0.97512 1.19821 1.01938 0.93088 1.06253 1.20616 0.89807 1.03241 0.95994 1.22637 0.97237 0.83514 0.90039 1.92845 1.97506 1.54356 1.74462 1.23610 0.94193 1.02502 1.00714 1.23372 0.96163 0.98111 0.85569 1.88849 1.18221 1.88791 1.36064 1.24080 0.82309 0.96295 1.00878 0.90558 0.88805 0.88124 0.86732 0.85768 0.88154 0.91643 0.86366 0.89484 0.89304 0.88785 0.90028 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.28 10.95 21.83 0.24 -44.05 16 2 C 0.03 1.70 5.13 85.26 0.44 2.14 16 3 Si 0.97 39.84 29.60 68.60 2.03 41.87 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.48 -25.51 7.51 23.46 0.18 -25.33 16 8 H 0.09 4.51 5.23 -2.91 -0.02 4.50 16 9 C 0.09 4.96 5.36 -21.29 -0.11 4.85 16 10 C -0.20 -10.92 8.70 22.73 0.20 -10.72 16 11 C -0.12 -5.56 10.02 22.22 0.22 -5.34 16 12 C -0.25 -10.58 10.05 22.46 0.23 -10.36 16 13 C -0.09 -3.60 9.24 22.22 0.21 -3.39 16 14 C -0.21 -9.45 4.72 -19.40 -0.09 -9.54 16 15 C -0.06 -2.15 4.08 29.85 0.12 -2.03 16 16 C 0.08 2.89 1.33 -9.49 -0.01 2.88 16 17 F -0.21 -9.38 14.01 44.97 0.63 -8.75 16 18 C -0.17 -4.31 6.42 31.59 0.20 -4.10 16 19 C 0.04 1.01 7.70 72.35 0.56 1.56 16 20 O -0.40 -12.47 11.52 -148.98 -1.72 -14.19 16 21 C 0.04 1.30 6.22 72.67 0.45 1.75 16 22 H 0.28 13.89 8.30 -92.71 -0.77 13.12 16 23 H 0.09 5.41 6.14 -2.91 -0.02 5.39 16 24 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 25 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 26 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 27 H 0.10 2.87 8.00 -2.39 -0.02 2.85 16 28 H 0.06 2.58 7.03 -2.38 -0.02 2.57 16 29 H 0.12 2.26 7.86 -2.39 -0.02 2.24 16 30 H 0.09 2.20 8.13 -2.39 -0.02 2.18 16 31 H 0.09 1.51 8.14 -2.38 -0.02 1.50 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.10 2.58 8.01 -2.39 -0.02 2.56 16 Total: -1.00 -63.08 281.17 4.86 -58.22 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 1.10 Total: 24.54 kcal Atomic # 6 Polarization: -60.22 SS G_CDS: 2.58 Total: -57.64 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.24 Total: -44.05 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -1.72 Total: -14.19 kcal Atomic # 9 Polarization: -9.38 SS G_CDS: 0.63 Total: -8.75 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -63.08 4.86 -58.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261201546.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.997 kcal (2) G-P(sol) polarization free energy of solvation -63.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds