Wall clock time and date at job start Mon Mar 30 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86796 * 119.99701 * 2 1 4 4 H 1.48500 * 109.47532 * 275.00981 * 3 2 1 5 5 H 1.48497 * 109.47226 * 35.01680 * 3 2 1 6 6 H 1.48510 * 109.47215 * 155.01196 * 3 2 1 7 7 C 1.39945 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99923 * 341.90201 * 7 2 1 9 9 C 1.41393 * 119.99996 * 161.90127 * 7 2 1 10 10 C 1.40737 * 120.24688 * 332.08936 * 9 7 2 11 11 C 1.37597 * 119.74653 * 179.97438 * 10 9 7 12 12 C 1.38653 * 120.24828 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50446 * 359.68424 * 12 11 10 14 14 C 1.37639 * 120.24404 * 0.59441 * 13 12 11 15 15 C 1.50698 * 120.12843 * 179.70613 * 14 13 12 16 16 C 1.52995 * 109.47306 * 93.97334 * 15 14 13 17 17 F 1.39894 * 110.75386 * 56.62367 * 16 15 14 18 18 C 1.55315 * 110.84896 * 180.09955 * 16 15 14 19 19 C 1.54938 * 100.94193 * 152.52136 * 18 16 15 20 20 O 1.43645 * 105.14194 * 323.55472 * 19 18 16 21 21 C 1.43245 * 109.96907 * 24.42770 * 20 19 18 22 22 H 0.96999 * 120.00557 * 359.97438 * 1 2 3 23 23 H 1.07994 * 120.12358 * 359.95361 * 10 9 7 24 24 H 1.07997 * 119.87463 * 179.97438 * 11 10 9 25 25 H 1.08003 * 119.75030 * 179.97438 * 12 11 10 26 26 H 1.07998 * 119.87958 * 180.30383 * 13 12 11 27 27 H 1.09001 * 109.46765 * 333.96804 * 15 14 13 28 28 H 1.09007 * 109.47058 * 213.97563 * 15 14 13 29 29 H 1.08996 * 111.11953 * 270.44629 * 18 16 15 30 30 H 1.09000 * 111.12320 * 34.60392 * 18 16 15 31 31 H 1.09008 * 110.31090 * 82.47463 * 19 18 16 32 32 H 1.08996 * 110.31105 * 204.63686 * 19 18 16 33 33 H 1.08999 * 109.83152 * 238.77708 * 21 20 19 34 34 H 1.08993 * 109.82889 * 117.80089 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3838 2.1077 -1.3947 5 1 1.4966 2.6197 0.8034 6 1 3.5887 1.4120 0.5915 7 6 2.0080 -1.2119 -0.0005 8 1 1.5081 -2.1242 0.2896 9 6 3.3695 -1.2420 -0.3810 10 6 3.8759 -0.2841 -1.2791 11 6 5.2026 -0.3226 -1.6418 12 6 6.0395 -1.3007 -1.1265 13 6 5.5530 -2.2456 -0.2366 14 6 4.2281 -2.2296 0.1358 15 6 3.7005 -3.2622 1.0984 16 6 3.7518 -2.7052 2.5224 17 9 3.0358 -1.5067 2.6121 18 6 3.2164 -3.7466 3.5429 19 6 3.9890 -3.3309 4.8200 20 8 5.2867 -2.9239 4.3577 21 6 5.2106 -2.5099 2.9885 22 1 -0.4851 0.8400 0.0004 23 1 3.2256 0.4781 -1.6822 24 1 5.5934 0.4112 -2.3312 25 1 7.0795 -1.3237 -1.4171 26 1 6.2150 -2.9999 0.1623 27 1 4.3129 -4.1618 1.0377 28 1 2.6699 -3.5062 0.8405 29 1 2.1406 -3.6420 3.6829 30 1 3.4745 -4.7615 3.2404 31 1 3.4851 -2.4996 5.3132 32 1 4.0782 -4.1776 5.5005 33 1 5.8780 -3.1202 2.3800 34 1 5.4883 -1.4594 2.9039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261201547.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:09 Heat of formation + Delta-G solvation = -81.231470 kcal Electronic energy + Delta-G solvation = -18960.282505 eV Core-core repulsion = 15964.871068 eV Total energy + Delta-G solvation = -2995.411437 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.85573 -38.80284 -37.86262 -33.58882 -33.22936 -30.70206 -30.36356 -28.61165 -25.93351 -24.71457 -22.38894 -21.40846 -20.62169 -19.34530 -17.33726 -16.62568 -16.07698 -15.77850 -14.86887 -14.70147 -14.22327 -14.11231 -13.86273 -13.63510 -13.22275 -12.82794 -12.62422 -12.13303 -11.81177 -11.63240 -11.46274 -11.36076 -11.31049 -10.79574 -10.69970 -10.59300 -10.17336 -9.97133 -9.69212 -9.38246 -9.36346 -9.08509 -7.62035 -7.56773 -6.92928 -4.42746 2.56347 2.68312 3.13887 3.24790 3.37096 4.00739 4.02272 4.50297 4.53935 4.88552 4.97144 5.10554 5.33172 5.42041 5.61429 5.72398 5.83447 5.93218 5.98554 6.00451 6.08696 6.16160 6.21638 6.39847 6.57215 6.69863 6.71782 6.95232 7.09567 7.19325 7.43268 7.65167 7.73170 7.87776 8.13736 8.37362 8.67134 8.83314 10.08863 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.010322 C = 0.008094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.664503 B = 2711.915736 C = 3458.588688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.088 3.912 3 Si 0.911 3.089 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.243 1.243 7 C -0.425 4.425 8 H 0.091 0.909 9 C 0.105 3.895 10 C -0.242 4.242 11 C -0.076 4.076 12 C -0.250 4.250 13 C -0.074 4.074 14 C -0.193 4.193 15 C -0.064 4.064 16 C 0.102 3.898 17 F -0.178 7.178 18 C -0.179 4.179 19 C 0.050 3.950 20 O -0.387 6.387 21 C 0.036 3.964 22 H 0.284 0.716 23 H 0.099 0.901 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.276 -4.635 4.924 8.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.131 4.131 3 Si 0.738 3.262 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.166 1.166 7 C -0.453 4.453 8 H 0.109 0.891 9 C 0.102 3.898 10 C -0.261 4.261 11 C -0.094 4.094 12 C -0.270 4.270 13 C -0.092 4.092 14 C -0.195 4.195 15 C -0.101 4.101 16 C 0.083 3.917 17 F -0.158 7.158 18 C -0.217 4.217 19 C -0.026 4.026 20 O -0.306 6.306 21 C -0.041 4.041 22 H 0.095 0.905 23 H 0.116 0.884 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.148 -4.513 5.074 8.521 hybrid contribution -0.050 0.969 -0.221 0.996 sum 5.098 -3.543 4.853 7.880 Atomic orbital electron populations 1.69682 1.08097 1.30189 1.35169 1.26095 0.94615 1.01685 0.90692 0.86344 0.81546 0.79913 0.78379 1.20023 1.22116 1.16635 1.19402 0.92847 0.95789 1.37224 0.89131 1.17513 0.92769 0.90380 0.89185 1.21011 0.95690 1.04306 1.05089 1.20592 0.93902 0.96929 0.98020 1.20317 0.98236 1.01290 1.07134 1.20474 0.94300 0.97354 0.97054 1.19352 0.93340 1.02375 1.04409 1.20623 1.02726 0.96383 0.90408 1.22243 0.90128 0.82294 0.97056 1.92964 1.79077 1.46583 1.97148 1.23880 1.02396 1.00059 0.95363 1.23367 0.83733 0.99298 0.96204 1.88367 1.29421 1.85933 1.26896 1.23801 0.96365 1.01605 0.82287 0.90547 0.88353 0.89091 0.89059 0.89011 0.91469 0.89890 0.88731 0.89010 0.91979 0.89713 0.89750 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.48 13.93 55.55 0.77 -20.70 16 2 C 0.09 2.31 5.42 -17.34 -0.09 2.22 16 3 Si 0.91 21.51 24.46 -169.99 -4.16 17.35 16 4 H -0.27 -6.25 6.67 56.52 0.38 -5.88 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.24 -5.96 6.81 56.52 0.38 -5.58 16 7 C -0.42 -11.15 7.49 -37.74 -0.28 -11.43 16 8 H 0.09 2.47 6.56 -52.49 -0.34 2.12 16 9 C 0.10 2.60 4.95 -106.82 -0.53 2.07 16 10 C -0.24 -5.88 7.15 -38.87 -0.28 -6.16 16 11 C -0.08 -1.67 10.02 -39.66 -0.40 -2.07 16 12 C -0.25 -5.18 10.05 -39.29 -0.39 -5.57 16 13 C -0.07 -1.49 8.97 -39.66 -0.36 -1.85 16 14 C -0.19 -4.24 4.72 -103.91 -0.49 -4.73 16 15 C -0.06 -1.19 4.22 -27.89 -0.12 -1.31 16 16 C 0.10 1.83 1.20 -88.67 -0.11 1.73 16 17 F -0.18 -3.96 14.97 2.25 0.03 -3.92 16 18 C -0.18 -2.56 6.42 -24.48 -0.16 -2.71 16 19 C 0.05 0.70 7.78 38.18 0.30 0.99 16 20 O -0.39 -6.41 11.36 -35.23 -0.40 -6.81 16 21 C 0.04 0.62 6.52 37.88 0.25 0.86 16 22 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 23 H 0.10 2.41 4.45 -52.49 -0.23 2.17 16 24 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 25 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 26 H 0.09 1.59 7.57 -52.49 -0.40 1.19 16 27 H 0.07 1.06 7.98 -51.93 -0.41 0.64 16 28 H 0.08 1.63 6.47 -51.92 -0.34 1.30 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.09 1.11 8.04 -51.93 -0.42 0.70 16 31 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.32 6.95 -51.93 -0.36 0.96 16 34 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 LS Contribution 275.18 15.07 4.15 4.15 Total: -1.00 -28.07 275.18 -6.48 -34.55 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -4.21 Total: 3.34 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -2.66 Total: -27.96 kcal Atomic # 7 Polarization: -21.48 SS G_CDS: 0.77 Total: -20.70 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.40 Total: -6.81 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.03 Total: -3.92 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.16 Total: 17.35 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.07 -6.48 -34.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261201547.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.681 kcal (2) G-P(sol) polarization free energy of solvation -28.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds