Wall clock time and date at job start Mon Mar 30 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86796 * 119.99701 * 2 1 4 4 H 1.48500 * 109.47532 * 275.00981 * 3 2 1 5 5 H 1.48497 * 109.47226 * 35.01680 * 3 2 1 6 6 H 1.48510 * 109.47215 * 155.01196 * 3 2 1 7 7 C 1.39945 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99923 * 341.90201 * 7 2 1 9 9 C 1.41393 * 119.99996 * 161.90127 * 7 2 1 10 10 C 1.40737 * 120.24688 * 332.08936 * 9 7 2 11 11 C 1.37597 * 119.74653 * 179.97438 * 10 9 7 12 12 C 1.38653 * 120.24828 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50446 * 359.68424 * 12 11 10 14 14 C 1.37639 * 120.24404 * 0.59441 * 13 12 11 15 15 C 1.50698 * 120.12843 * 179.70613 * 14 13 12 16 16 C 1.52995 * 109.47306 * 93.97334 * 15 14 13 17 17 F 1.39894 * 110.75386 * 56.62367 * 16 15 14 18 18 C 1.55315 * 110.84896 * 180.09955 * 16 15 14 19 19 C 1.54938 * 100.94193 * 152.52136 * 18 16 15 20 20 O 1.43645 * 105.14194 * 323.55472 * 19 18 16 21 21 C 1.43245 * 109.96907 * 24.42770 * 20 19 18 22 22 H 0.96999 * 120.00557 * 359.97438 * 1 2 3 23 23 H 1.07994 * 120.12358 * 359.95361 * 10 9 7 24 24 H 1.07997 * 119.87463 * 179.97438 * 11 10 9 25 25 H 1.08003 * 119.75030 * 179.97438 * 12 11 10 26 26 H 1.07998 * 119.87958 * 180.30383 * 13 12 11 27 27 H 1.09001 * 109.46765 * 333.96804 * 15 14 13 28 28 H 1.09007 * 109.47058 * 213.97563 * 15 14 13 29 29 H 1.08996 * 111.11953 * 270.44629 * 18 16 15 30 30 H 1.09000 * 111.12320 * 34.60392 * 18 16 15 31 31 H 1.09008 * 110.31090 * 82.47463 * 19 18 16 32 32 H 1.08996 * 110.31105 * 204.63686 * 19 18 16 33 33 H 1.08999 * 109.83152 * 238.77708 * 21 20 19 34 34 H 1.08993 * 109.82889 * 117.80089 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3838 2.1077 -1.3947 5 1 1.4966 2.6197 0.8034 6 1 3.5887 1.4120 0.5915 7 6 2.0080 -1.2119 -0.0005 8 1 1.5081 -2.1242 0.2896 9 6 3.3695 -1.2420 -0.3810 10 6 3.8759 -0.2841 -1.2791 11 6 5.2026 -0.3226 -1.6418 12 6 6.0395 -1.3007 -1.1265 13 6 5.5530 -2.2456 -0.2366 14 6 4.2281 -2.2296 0.1358 15 6 3.7005 -3.2622 1.0984 16 6 3.7518 -2.7052 2.5224 17 9 3.0358 -1.5067 2.6121 18 6 3.2164 -3.7466 3.5429 19 6 3.9890 -3.3309 4.8200 20 8 5.2867 -2.9239 4.3577 21 6 5.2106 -2.5099 2.9885 22 1 -0.4851 0.8400 0.0004 23 1 3.2256 0.4781 -1.6822 24 1 5.5934 0.4112 -2.3312 25 1 7.0795 -1.3237 -1.4171 26 1 6.2150 -2.9999 0.1623 27 1 4.3129 -4.1618 1.0377 28 1 2.6699 -3.5062 0.8405 29 1 2.1406 -3.6420 3.6829 30 1 3.4745 -4.7615 3.2404 31 1 3.4851 -2.4996 5.3132 32 1 4.0782 -4.1776 5.5005 33 1 5.8780 -3.1202 2.3800 34 1 5.4883 -1.4594 2.9039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261201547.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:08 Heat of formation + Delta-G solvation = -97.726481 kcal Electronic energy + Delta-G solvation = -18960.997782 eV Core-core repulsion = 15964.871068 eV Total energy + Delta-G solvation = -2996.126714 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.42422 -40.17144 -39.48483 -35.46989 -34.71547 -32.27030 -31.95574 -30.00991 -27.53423 -26.44263 -23.59390 -23.18551 -22.09468 -20.94622 -19.20710 -17.95432 -17.56419 -17.36489 -16.34384 -16.20176 -15.90608 -15.70162 -15.35388 -15.30285 -14.68400 -14.47134 -14.15913 -13.78339 -13.53449 -13.29227 -12.90866 -12.72187 -12.65203 -12.51457 -12.46167 -12.18000 -11.73280 -11.57184 -11.51421 -11.02292 -10.93497 -10.59002 -9.40246 -9.30050 -8.86233 -6.36837 0.80237 0.89567 1.22468 1.36875 1.45430 2.11064 2.66954 2.80885 3.25559 3.47298 3.57118 3.82702 3.90003 4.15944 4.21610 4.35679 4.39173 4.50475 4.61931 4.67538 4.78484 4.80299 4.89035 4.92637 4.99411 5.05502 5.17451 5.28821 5.39559 5.70180 5.87861 5.89493 5.96823 6.06716 6.33431 6.49129 6.81870 6.93730 8.21537 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.010322 C = 0.008094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.664503 B = 2711.915736 C = 3458.588688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.053 3.947 3 Si 0.954 3.046 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.446 4.446 8 H 0.065 0.935 9 C 0.080 3.920 10 C -0.265 4.265 11 C -0.089 4.089 12 C -0.234 4.234 13 C -0.077 4.077 14 C -0.193 4.193 15 C -0.062 4.062 16 C 0.085 3.915 17 F -0.210 7.210 18 C -0.170 4.170 19 C 0.048 3.952 20 O -0.396 6.396 21 C 0.043 3.957 22 H 0.289 0.711 23 H 0.088 0.912 24 H 0.117 0.883 25 H 0.128 0.872 26 H 0.133 0.867 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.054 0.946 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.173 -6.041 5.226 11.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.161 4.161 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.184 1.184 7 C -0.476 4.476 8 H 0.083 0.917 9 C 0.077 3.923 10 C -0.284 4.284 11 C -0.107 4.107 12 C -0.253 4.253 13 C -0.095 4.095 14 C -0.194 4.194 15 C -0.099 4.099 16 C 0.066 3.934 17 F -0.190 7.190 18 C -0.207 4.207 19 C -0.028 4.028 20 O -0.316 6.316 21 C -0.034 4.034 22 H 0.099 0.901 23 H 0.106 0.894 24 H 0.135 0.865 25 H 0.146 0.854 26 H 0.151 0.849 27 H 0.124 0.876 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.139 0.861 31 H 0.072 0.928 32 H 0.139 0.861 33 H 0.124 0.876 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.049 -5.917 5.373 11.343 hybrid contribution -0.703 1.274 -0.339 1.494 sum 7.346 -4.644 5.034 10.044 Atomic orbital electron populations 1.69712 1.08821 1.30839 1.38365 1.26580 0.95098 1.03575 0.90826 0.85677 0.79700 0.77958 0.78625 1.19043 1.21392 1.18380 1.19304 0.93938 0.95052 1.39256 0.91720 1.17767 0.92750 0.91902 0.89884 1.21151 0.97035 1.04457 1.05787 1.20961 0.93095 0.98127 0.98553 1.20880 0.99731 0.99590 1.05085 1.20933 0.93985 0.98098 0.96497 1.19808 0.93986 1.01699 1.03920 1.20665 1.02227 0.96940 0.90108 1.22580 0.91077 0.82034 0.97699 1.92902 1.79996 1.48822 1.97293 1.23889 1.02310 1.00264 0.94254 1.23568 0.82515 1.00356 0.96379 1.88356 1.30712 1.85999 1.26514 1.23702 0.95738 1.00856 0.83097 0.90094 0.89432 0.86463 0.85419 0.84906 0.87607 0.91827 0.88973 0.86084 0.92758 0.86095 0.87566 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.57 13.93 21.83 0.30 -47.27 16 2 C 0.05 2.92 5.42 85.26 0.46 3.38 16 3 Si 0.95 45.70 24.46 68.60 1.68 47.38 16 4 H -0.26 -12.04 6.67 99.48 0.66 -11.38 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.26 -12.92 6.81 99.48 0.68 -12.24 16 7 C -0.45 -24.49 7.49 23.46 0.18 -24.31 16 8 H 0.06 3.76 6.56 -2.91 -0.02 3.74 16 9 C 0.08 3.98 4.95 -21.29 -0.11 3.88 16 10 C -0.27 -12.83 7.15 22.73 0.16 -12.66 16 11 C -0.09 -3.69 10.02 22.22 0.22 -3.47 16 12 C -0.23 -8.65 10.05 22.46 0.23 -8.43 16 13 C -0.08 -2.82 8.97 22.22 0.20 -2.62 16 14 C -0.19 -8.14 4.72 -19.40 -0.09 -8.23 16 15 C -0.06 -2.21 4.22 29.85 0.13 -2.09 16 16 C 0.08 2.95 1.20 -9.53 -0.01 2.94 16 17 F -0.21 -9.57 14.97 44.97 0.67 -8.90 16 18 C -0.17 -4.45 6.42 32.05 0.21 -4.25 16 19 C 0.05 1.19 7.78 72.64 0.56 1.75 16 20 O -0.40 -12.04 11.36 -148.98 -1.69 -13.74 16 21 C 0.04 1.36 6.52 72.45 0.47 1.83 16 22 H 0.29 14.77 8.30 -92.71 -0.77 14.00 16 23 H 0.09 4.34 4.45 -2.91 -0.01 4.33 16 24 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 25 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 26 H 0.13 3.78 7.57 -2.91 -0.02 3.76 16 27 H 0.11 2.90 7.98 -2.39 -0.02 2.88 16 28 H 0.06 2.53 6.47 -2.38 -0.02 2.51 16 29 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.12 2.46 8.04 -2.39 -0.02 2.44 16 31 H 0.05 1.43 8.14 -2.38 -0.02 1.42 16 32 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.11 2.86 6.95 -2.39 -0.02 2.85 16 34 H 0.06 2.08 8.11 -2.39 -0.02 2.06 16 Total: -1.00 -62.91 275.18 4.60 -58.31 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 1.03 Total: 16.49 kcal Atomic # 6 Polarization: -54.88 SS G_CDS: 2.61 Total: -52.28 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.30 Total: -47.27 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -1.69 Total: -13.74 kcal Atomic # 9 Polarization: -9.57 SS G_CDS: 0.67 Total: -8.90 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.68 Total: 47.38 kcal Total: -62.91 4.60 -58.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261201547.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.421 kcal (2) G-P(sol) polarization free energy of solvation -62.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds