Wall clock time and date at job start Mon Mar 30 2020 05:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47246 * 2 1 4 4 C 1.50701 * 109.47364 * 240.00140 * 2 1 3 5 5 H 1.08002 * 119.99820 * 245.46474 * 4 2 1 6 6 C 1.37877 * 120.00353 * 65.45827 * 4 2 1 7 7 N 1.31521 * 119.99432 * 9.60446 * 6 4 2 8 8 Si 1.86791 * 120.00539 * 189.60265 * 6 4 2 9 9 H 1.48499 * 109.47103 * 84.99574 * 8 6 4 10 10 H 1.48495 * 109.47538 * 204.99764 * 8 6 4 11 11 H 1.48503 * 109.47156 * 324.99922 * 8 6 4 12 12 N 1.46502 * 109.47112 * 120.00070 * 2 1 3 13 13 C 1.36421 * 126.36210 * 59.99815 * 12 2 1 14 14 O 1.35299 * 125.03356 * 359.97438 * 13 12 2 15 15 N 1.30716 * 109.93038 * 180.02562 * 13 12 2 16 16 C 1.35974 * 109.61335 * 359.97438 * 15 13 12 17 17 C 1.38438 * 126.36545 * 240.00250 * 12 2 1 18 18 C 1.38731 * 133.91756 * 359.97438 * 17 12 2 19 19 C 1.37954 * 119.88184 * 180.02562 * 18 17 12 20 20 C 1.38686 * 120.45350 * 359.97089 * 19 18 17 21 21 C 1.37904 * 120.47232 * 0.02888 * 20 19 18 22 22 F 1.35097 * 120.13153 * 179.72092 * 21 20 19 23 23 H 1.08997 * 109.47385 * 183.20374 * 1 2 3 24 24 H 1.09003 * 109.47385 * 303.20931 * 1 2 3 25 25 H 1.09005 * 109.47030 * 63.20424 * 1 2 3 26 26 H 0.96997 * 119.99740 * 179.97438 * 7 6 4 27 27 H 0.96701 * 114.00153 * 90.00558 * 14 13 12 28 28 H 1.07991 * 120.05878 * 359.97438 * 18 17 12 29 29 H 1.08002 * 119.76810 * 180.02562 * 19 18 17 30 30 H 1.07994 * 119.76609 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5785 -1.6371 -1.1338 6 6 1.7946 -0.1774 -2.4796 7 7 1.3001 1.0360 -2.5935 8 14 2.1749 -1.1784 -4.0101 9 1 1.0222 -2.0606 -4.3237 10 1 2.4220 -0.2621 -5.1523 11 1 3.3829 -2.0085 -3.7712 12 7 2.0183 -0.6906 1.1962 13 6 1.7700 -1.9874 1.5394 14 8 1.0212 -2.8523 0.8171 15 7 2.3618 -2.2702 2.6702 16 6 3.0271 -1.1744 3.1236 17 6 2.8174 -0.1486 2.1882 18 6 3.3842 1.1012 2.3916 19 6 4.1533 1.3327 3.5132 20 6 4.3643 0.3241 4.4414 21 6 3.8088 -0.9244 4.2558 22 9 4.0235 -1.9036 5.1615 23 1 -0.3634 -1.0260 0.0574 24 1 -0.3634 0.5629 0.8598 25 1 -0.3633 0.4633 -0.9174 26 1 1.1332 1.4111 -3.4723 27 1 1.5246 -3.3589 0.1651 28 1 3.2244 1.8911 1.6728 29 1 4.5934 2.3065 3.6699 30 1 4.9680 0.5177 5.3156 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261202338.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:23 Heat of formation + Delta-G solvation = -35.886674 kcal Electronic energy + Delta-G solvation = -18115.497214 eV Core-core repulsion = 15018.511731 eV Total energy + Delta-G solvation = -3096.985483 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 250.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.79543 -43.10218 -39.02512 -37.35079 -36.66179 -34.23236 -31.68668 -30.03970 -29.84936 -27.43256 -24.27256 -23.96862 -23.43593 -21.39935 -19.72813 -18.76099 -18.38186 -17.92645 -17.20465 -16.74695 -16.71257 -16.32685 -16.15241 -15.37805 -15.07188 -14.58474 -14.16700 -13.90458 -13.48824 -13.24970 -13.19541 -12.82241 -12.72154 -12.55223 -12.41128 -12.28400 -12.11286 -11.70830 -11.12354 -10.95663 -10.63618 -9.34537 -8.93626 -8.33476 -6.47768 -0.20269 0.44543 1.38750 1.40302 1.44854 1.51452 1.72338 2.32361 2.67126 2.72205 2.98546 3.26785 3.54995 3.97340 4.16596 4.24149 4.33996 4.59718 4.70479 4.73403 4.74212 5.06149 5.14985 5.27891 5.34103 5.43108 5.54090 5.62064 5.86091 5.87999 5.92476 6.47780 6.73574 6.75744 7.22605 8.73457 Molecular weight = 250.09amu Principal moments of inertia in cm(-1) A = 0.030041 B = 0.007020 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.833017 B = 3987.845080 C = 4352.234917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.551 4.551 5 H 0.057 0.943 6 C 0.035 3.965 7 N -0.906 5.906 8 Si 0.963 3.037 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.272 1.272 12 N -0.466 5.466 13 C 0.456 3.544 14 O -0.442 6.442 15 N -0.532 5.532 16 C -0.011 4.011 17 C 0.056 3.944 18 C -0.120 4.120 19 C -0.066 4.066 20 C -0.143 4.143 21 C 0.117 3.883 22 F -0.143 7.143 23 H 0.049 0.951 24 H 0.029 0.971 25 H 0.070 0.930 26 H 0.272 0.728 27 H 0.421 0.579 28 H 0.134 0.866 29 H 0.185 0.815 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.599 1.329 7.443 8.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.065 0.935 4 C -0.589 4.589 5 H 0.075 0.925 6 C -0.167 4.167 7 N -0.542 5.542 8 Si 0.787 3.213 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.196 1.196 12 N -0.163 5.163 13 C 0.153 3.847 14 O -0.246 6.246 15 N -0.265 5.265 16 C -0.131 4.131 17 C -0.055 4.055 18 C -0.141 4.141 19 C -0.086 4.086 20 C -0.164 4.164 21 C 0.096 3.904 22 F -0.121 7.121 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.282 0.718 28 H 0.152 0.848 29 H 0.203 0.797 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.908 0.839 7.838 8.799 hybrid contribution 0.105 -0.345 -1.775 1.811 sum 4.012 0.494 6.063 7.287 Atomic orbital electron populations 1.21927 0.96098 1.00690 1.00543 1.19126 0.92335 0.92858 0.79156 0.93549 1.21216 1.38097 1.09042 0.90554 0.92455 1.25552 0.94193 0.95428 1.01553 1.70004 1.43885 1.14743 1.25609 0.85493 0.78815 0.78591 0.78362 1.19420 1.20727 1.19630 1.46700 1.38920 1.10894 1.19769 1.20407 0.92771 0.81781 0.89711 1.84661 1.33738 1.52701 1.53485 1.70588 1.16383 1.27818 1.11683 1.19051 1.04566 0.91313 0.98201 1.18990 0.98590 0.97029 0.90903 1.20434 0.99982 0.93084 1.00607 1.21148 0.96171 1.00492 0.90761 1.21239 1.02546 0.89536 1.03051 1.17097 1.00074 0.87366 0.85857 1.91432 1.93238 1.62150 1.65298 0.93146 0.95204 0.91152 0.91909 0.71821 0.84772 0.79741 0.80387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.04 9.15 71.98 0.66 -5.39 16 2 C 0.27 12.46 2.78 44.24 0.12 12.58 16 3 H 0.05 2.34 7.55 -2.39 -0.02 2.32 16 4 C -0.55 -27.23 8.23 25.60 0.21 -27.01 16 5 H 0.06 2.81 7.70 -2.91 -0.02 2.79 16 6 C 0.04 1.74 5.17 84.65 0.44 2.18 16 7 N -0.91 -46.67 12.16 21.45 0.26 -46.41 16 8 Si 0.96 39.35 29.55 68.60 2.03 41.38 16 9 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 10 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 11 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 12 N -0.47 -20.61 2.67 -613.15 -1.64 -22.25 16 13 C 0.46 19.88 8.24 179.75 1.48 21.36 16 14 O -0.44 -17.05 12.10 -85.85 -1.04 -18.09 16 15 N -0.53 -23.76 11.31 -306.35 -3.46 -27.22 16 16 C -0.01 -0.46 7.21 39.42 0.28 -0.17 16 17 C 0.06 2.28 6.87 38.74 0.27 2.55 16 18 C -0.12 -3.85 9.88 22.32 0.22 -3.63 16 19 C -0.07 -1.53 10.03 22.31 0.22 -1.31 16 20 C -0.14 -3.50 10.00 22.30 0.22 -3.28 16 21 C 0.12 4.00 7.34 22.58 0.17 4.16 16 22 F -0.14 -4.96 17.27 44.97 0.78 -4.19 16 23 H 0.05 2.24 6.84 -2.39 -0.02 2.22 16 24 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 3.36 6.84 -2.38 -0.02 3.34 16 26 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 27 H 0.42 12.71 9.06 -74.06 -0.67 12.04 16 28 H 0.13 4.13 7.74 -2.92 -0.02 4.11 16 29 H 0.19 2.50 8.06 -2.91 -0.02 2.47 16 30 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -61.57 269.58 1.73 -59.84 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.52 Total: 14.90 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 4.29 Total: 2.05 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -4.84 Total: -95.88 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -1.04 Total: -18.09 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.78 Total: -4.19 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -61.57 1.73 -59.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261202338.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.949 kcal (2) G-P(sol) polarization free energy of solvation -61.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds