Wall clock time and date at job start Mon Mar 30 2020 05:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 5 5 C 1.46901 * 110.99913 * 85.00348 * 4 2 1 6 6 C 1.53002 * 109.47317 * 180.02562 * 5 4 2 7 7 C 1.50695 * 109.47379 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00042 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00287 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99633 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00472 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47076 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47382 * 119.99985 * 11 9 7 14 14 H 1.48500 * 109.47398 * 240.00093 * 11 9 7 15 15 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 16 16 C 1.33706 * 124.51034 * 259.99824 * 15 2 1 17 17 C 1.37622 * 115.09201 * 180.02562 * 16 15 2 18 18 C 1.36623 * 113.27125 * 0.02562 * 17 16 15 19 19 C 1.43203 * 125.45940 * 179.97438 * 18 17 16 20 20 N 6.48877 * 106.88956 * 132.79045 * 2 1 3 21 21 S 1.70614 * 124.50916 * 79.70075 * 15 2 1 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.00896 * 111.00728 * 321.04492 * 4 2 1 26 26 H 1.09007 * 109.47248 * 299.99411 * 5 4 2 27 27 H 1.08990 * 109.47767 * 59.99672 * 5 4 2 28 28 H 1.09010 * 109.46876 * 299.99637 * 6 5 4 29 29 H 1.09000 * 109.47585 * 59.99024 * 6 5 4 30 30 H 0.97006 * 120.00110 * 179.97438 * 10 9 7 31 31 H 1.07998 * 122.45899 * 0.02562 * 16 15 2 32 32 H 1.08002 * 123.36195 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3468 6 6 2.5949 -0.5331 -3.5745 7 6 2.6588 0.4055 -4.7517 8 1 2.3630 1.4378 -4.6360 9 6 3.0948 -0.0534 -5.9766 10 7 3.4555 -1.3103 -6.1173 11 14 3.1733 1.1098 -7.4360 12 1 2.7162 2.4596 -7.0183 13 1 4.5714 1.1909 -7.9297 14 1 2.2941 0.6036 -8.5204 15 6 2.0323 -0.7104 1.2305 16 6 2.4653 -0.0959 2.3362 17 6 2.8815 -0.9345 3.3450 18 6 2.7743 -2.2584 3.0250 19 6 3.1329 -3.3510 3.8784 20 7 3.4151 -4.2178 4.5563 21 16 2.1176 -2.4059 1.4006 22 1 -0.3634 0.5137 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.4495 -1.4979 -1.4101 26 1 1.0870 0.6164 -2.5525 27 1 2.7587 1.0462 -2.1183 28 1 3.5903 -0.9272 -3.3692 29 1 1.9182 -1.3565 -3.8030 30 1 3.7619 -1.6334 -6.9791 31 1 2.4868 0.9797 2.4310 32 1 3.2555 -0.5813 4.2946 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273318596.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:33 Heat of formation + Delta-G solvation = 29.412520 kcal Electronic energy + Delta-G solvation = -14840.631241 eV Core-core repulsion = 12312.690520 eV Total energy + Delta-G solvation = -2527.940721 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 250.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.53811 -38.16612 -37.18620 -35.28492 -33.05861 -30.44398 -29.22867 -26.44685 -25.67122 -22.70820 -22.58695 -21.62052 -19.19850 -18.48969 -17.21443 -16.65653 -16.23960 -15.89002 -15.48242 -15.23387 -14.91434 -14.44271 -14.29782 -14.13553 -13.99143 -13.64733 -13.25343 -13.04993 -12.91661 -12.85076 -12.65253 -12.35463 -12.24252 -11.94337 -11.61853 -11.37369 -11.21399 -10.54416 -9.63558 -9.47148 -9.25897 -8.17720 -6.28469 -0.44088 0.26699 1.03660 1.42608 1.43324 1.48812 1.55976 1.87375 2.29623 2.42732 2.93706 3.16545 3.28754 3.80684 4.16126 4.33996 4.44230 4.56382 4.59315 4.66036 4.83076 4.94165 5.06121 5.12364 5.21445 5.32134 5.44649 5.50659 5.71987 5.81841 6.14003 6.27761 6.36987 6.49251 6.90038 7.41034 8.94429 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.038953 B = 0.003930 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.640224 B = 7122.582054 C = 7508.918268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.145 3.855 3 H 0.104 0.896 4 N -0.695 5.695 5 C 0.088 3.912 6 C 0.029 3.971 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.000 4.000 10 N -0.932 5.932 11 Si 0.964 3.036 12 H -0.260 1.260 13 H -0.281 1.281 14 H -0.280 1.280 15 C -0.168 4.168 16 C -0.152 4.152 17 C -0.036 4.036 18 C -0.210 4.210 19 C 0.308 3.692 20 N -0.460 5.460 21 S 0.259 5.741 22 H 0.084 0.916 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.339 0.661 26 H 0.028 0.972 27 H 0.063 0.937 28 H -0.007 1.007 29 H -0.009 1.009 30 H 0.262 0.738 31 H 0.171 0.829 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.921 4.397 16.983 18.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.033 3.967 3 H 0.122 0.878 4 N -0.326 5.326 5 C -0.040 4.040 6 C -0.008 4.008 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.198 4.198 10 N -0.573 5.573 11 Si 0.789 3.211 12 H -0.183 1.183 13 H -0.207 1.207 14 H -0.206 1.206 15 C -0.290 4.290 16 C -0.182 4.182 17 C -0.073 4.073 18 C -0.331 4.331 19 C -0.007 4.007 20 N -0.139 5.139 21 S 0.528 5.472 22 H 0.103 0.897 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.157 0.843 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.011 0.989 29 H 0.010 0.990 30 H 0.071 0.929 31 H 0.189 0.811 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.139 1.789 17.095 17.940 hybrid contribution -0.363 1.674 -0.633 1.826 sum -5.503 3.463 16.462 17.700 Atomic orbital electron populations 1.22480 0.94364 1.02955 1.03488 1.20143 0.93787 0.97373 0.85375 0.87771 1.60614 1.57333 1.10243 1.04364 1.21774 0.98508 0.94651 0.89102 1.18941 0.94952 0.94868 0.92066 1.21657 1.43604 0.97123 0.95491 0.91903 1.25954 0.94935 0.96736 1.02194 1.70116 1.45431 1.16421 1.25283 0.85411 0.77718 0.79282 0.78692 1.18339 1.20662 1.20576 1.24456 1.05252 0.98852 1.00395 1.20099 1.03342 1.02973 0.91820 1.20954 0.96340 0.88784 1.01204 1.20504 1.20131 0.92762 0.99686 1.24530 0.92020 0.91925 0.92204 1.81291 1.11706 1.10334 1.10546 1.83465 1.56413 1.02469 1.04858 0.89700 0.92170 0.92107 0.84263 0.95347 0.91895 0.98852 0.99035 0.92880 0.81141 0.80619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 9.14 71.98 0.66 -2.54 16 2 C 0.14 3.18 2.98 44.17 0.13 3.32 16 3 H 0.10 2.19 7.77 -2.39 -0.02 2.17 16 4 N -0.69 -21.18 5.93 -495.46 -2.94 -24.12 16 5 C 0.09 3.31 5.42 86.30 0.47 3.78 16 6 C 0.03 1.48 5.23 29.85 0.16 1.64 16 7 C -0.54 -29.69 9.11 25.60 0.23 -29.46 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 9 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 10 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 11 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 12 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 13 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 15 C -0.17 -3.32 5.25 24.66 0.13 -3.19 16 16 C -0.15 -2.34 9.98 21.09 0.21 -2.13 16 17 C -0.04 -0.54 10.24 21.75 0.22 -0.31 16 18 C -0.21 -4.13 6.32 23.14 0.15 -3.99 16 19 C 0.31 7.26 15.83 88.33 1.40 8.65 16 20 N -0.46 -12.83 18.54 19.00 0.35 -12.48 16 21 S 0.26 5.40 22.67 -56.49 -1.28 4.12 16 22 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.06 1.22 7.45 -2.39 -0.02 1.20 16 24 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 25 H 0.34 10.22 8.47 -89.70 -0.76 9.46 16 26 H 0.03 1.02 7.44 -2.38 -0.02 1.00 16 27 H 0.06 2.34 8.05 -2.39 -0.02 2.32 16 28 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 29 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 30 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 31 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -65.10 300.16 3.03 -62.07 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 0.37 Total: 4.67 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 4.22 Total: -23.79 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -2.30 Total: -92.36 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -1.28 Total: 4.12 kcal Total: -65.10 3.03 -62.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273318596.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.484 kcal (2) G-P(sol) polarization free energy of solvation -65.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds