Wall clock time and date at job start Mon Mar 30 2020 06:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48499 * 109.46986 * 269.99942 * 3 2 1 5 5 H 1.48498 * 109.47196 * 29.99746 * 3 2 1 6 6 H 1.48496 * 109.47276 * 149.99656 * 3 2 1 7 7 C 1.37875 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00291 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99719 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47093 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46953 * 180.02562 * 11 10 9 13 13 H 1.09007 * 110.66863 * 303.23143 * 12 11 10 14 14 C 1.54703 * 110.74903 * 179.81824 * 12 11 10 15 15 C 1.51651 * 101.93699 * 216.38665 * 14 12 11 16 16 C 1.37750 * 132.14706 * 195.85572 * 15 14 12 17 17 C 1.38531 * 119.96318 * 179.08323 * 16 15 14 18 18 F 1.35105 * 120.14488 * 180.02562 * 17 16 15 19 19 C 1.38479 * 119.71298 * 0.02562 * 17 16 15 20 20 C 1.37930 * 120.31962 * 0.42061 * 19 17 16 21 21 C 1.38865 * 107.04444 * 15.34059 * 15 14 12 22 22 O 1.36192 * 111.22302 * 1.14771 * 21 15 14 23 23 H 0.97003 * 120.00123 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47410 * 59.99883 * 9 7 2 25 25 H 1.08997 * 109.47244 * 299.99127 * 9 7 2 26 26 H 1.09006 * 109.46932 * 59.99961 * 10 9 7 27 27 H 1.08996 * 109.47188 * 300.00225 * 10 9 7 28 28 H 1.08997 * 109.47200 * 60.00494 * 11 10 9 29 29 H 1.09006 * 109.47468 * 300.00367 * 11 10 9 30 30 H 1.09000 * 110.94127 * 98.23098 * 14 12 11 31 31 H 1.08997 * 110.93692 * 334.54453 * 14 12 11 32 32 H 1.08003 * 120.02012 * 359.07114 * 16 15 14 33 33 H 1.08002 * 119.83600 * 180.13695 * 19 17 16 34 34 H 1.08001 * 119.85961 * 179.71938 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0018 13 1 3.1494 -6.0796 -0.8513 14 6 1.7312 -7.5067 0.0071 15 6 2.6300 -8.3534 0.8873 16 6 2.7169 -9.7144 1.0819 17 6 3.6641 -10.2299 1.9514 18 9 3.7529 -11.5641 2.1447 19 6 4.5197 -9.3717 2.6217 20 6 4.4265 -8.0085 2.4338 21 6 3.4785 -7.4834 1.5592 22 8 3.2137 -6.1875 1.2343 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8906 27 1 2.8719 -3.6043 -0.8894 28 1 0.8534 -5.0451 -0.8886 29 1 0.8538 -5.0446 0.8914 30 1 1.6694 -7.9209 -0.9992 31 1 0.7389 -7.4054 0.4467 32 1 2.0467 -10.3791 0.5571 33 1 5.2604 -9.7716 3.2984 34 1 5.0946 -7.3457 2.9638 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309152577.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:39 Heat of formation + Delta-G solvation = -74.480327 kcal Electronic energy + Delta-G solvation = -17159.337784 eV Core-core repulsion = 14164.219098 eV Total energy + Delta-G solvation = -2995.118686 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.99358 -41.20288 -37.48330 -34.67331 -33.02221 -32.10628 -29.90167 -29.51071 -26.75626 -23.94061 -22.63422 -21.99512 -21.39009 -20.09290 -17.71341 -17.39406 -17.10515 -16.32018 -15.78430 -15.40230 -14.75727 -14.44518 -14.39997 -13.86696 -13.49571 -13.24776 -12.99136 -12.75985 -12.57415 -12.24173 -12.05545 -11.40390 -11.33133 -10.98176 -10.85050 -10.74682 -10.45514 -10.38917 -9.66692 -9.27902 -9.24727 -9.02301 -8.33278 -8.13476 -5.98485 -4.00453 0.93195 1.01185 3.15232 3.32976 3.38480 3.39139 3.43109 3.94348 4.34076 4.44080 4.48564 4.67274 4.86724 4.96874 5.05392 5.23974 5.37368 5.40624 5.51239 5.63559 5.70990 5.85498 5.90760 5.94504 6.12371 6.16523 6.35853 6.46219 6.73968 6.88611 7.10687 7.16720 7.69506 7.84226 8.01980 8.45300 9.06782 9.63559 11.12935 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.057675 B = 0.003476 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.360738 B = 8052.851155 C = 8397.898148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.116 4.116 12 C 0.083 3.917 13 H 0.088 0.912 14 C -0.108 4.108 15 C -0.150 4.150 16 C -0.104 4.104 17 C 0.058 3.942 18 F -0.142 7.142 19 C -0.117 4.117 20 C -0.116 4.116 21 C 0.108 3.892 22 O -0.288 6.288 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.883 -19.887 1.850 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.153 4.153 12 C 0.027 3.973 13 H 0.106 0.894 14 C -0.145 4.145 15 C -0.151 4.151 16 C -0.123 4.123 17 C 0.039 3.961 18 F -0.121 7.121 19 C -0.136 4.136 20 C -0.135 4.135 21 C 0.062 3.938 22 O -0.201 6.201 23 H 0.070 0.930 24 H 0.033 0.967 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.783 -19.592 1.962 20.522 hybrid contribution 0.336 0.604 -0.065 0.695 sum 6.120 -18.988 1.897 20.040 Atomic orbital electron populations 1.69960 1.06057 1.26548 1.51079 1.25027 0.94849 0.99255 0.95396 0.86604 0.79898 0.83502 0.78069 1.20695 1.21242 1.19855 1.21279 0.93072 0.91138 1.50287 0.92700 1.19106 0.93999 0.91436 0.97123 1.21620 0.99128 0.93258 1.00771 1.21872 0.96718 0.93768 1.02957 1.23662 0.93009 0.95502 0.85087 0.89418 1.21969 0.99171 0.93368 0.99989 1.20691 0.98855 0.93338 1.02185 1.20184 0.98853 0.94240 0.98979 1.17353 1.00023 0.77434 1.01298 1.91482 1.95827 1.30476 1.94276 1.20809 0.99825 0.92293 1.00670 1.20108 0.98502 0.94192 1.00689 1.19731 0.93810 0.84634 0.95634 1.87000 1.71443 1.21315 1.40386 0.93045 0.96694 0.96608 0.92684 0.93375 0.90115 0.91172 0.88828 0.88476 0.84667 0.84068 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.25 5.07 -26.73 -0.14 -2.39 16 11 C -0.12 -1.85 4.92 -26.73 -0.13 -1.98 16 12 C 0.08 1.13 3.61 -25.84 -0.09 1.04 16 13 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 14 C -0.11 -1.20 6.65 -26.52 -0.18 -1.37 16 15 C -0.15 -1.80 6.27 -104.10 -0.65 -2.45 16 16 C -0.10 -1.12 10.01 -39.65 -0.40 -1.52 16 17 C 0.06 0.64 7.31 -39.38 -0.29 0.35 16 18 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 19 C -0.12 -1.19 10.00 -39.61 -0.40 -1.58 16 20 C -0.12 -1.32 10.06 -39.31 -0.40 -1.71 16 21 C 0.11 1.46 7.03 -38.97 -0.27 1.18 16 22 O -0.29 -4.48 10.49 -20.35 -0.21 -4.70 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 1.03 7.92 -51.93 -0.41 0.62 16 32 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 295.45 15.07 4.45 4.45 Total: -1.00 -31.07 295.45 -8.09 -39.16 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -4.59 Total: -4.06 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -3.49 Total: -23.71 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.74 Total: -26.38 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.21 Total: -4.70 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.07 -8.09 -39.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309152577.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.320 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds