Wall clock time and date at job start Mon Mar 30 2020 06:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48499 * 109.46986 * 269.99942 * 3 2 1 5 5 H 1.48498 * 109.47196 * 29.99746 * 3 2 1 6 6 H 1.48496 * 109.47276 * 149.99656 * 3 2 1 7 7 C 1.37875 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00291 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99719 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47093 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46953 * 180.02562 * 11 10 9 13 13 H 1.09007 * 110.66863 * 303.23143 * 12 11 10 14 14 C 1.54703 * 110.74903 * 179.81824 * 12 11 10 15 15 C 1.51651 * 101.93699 * 216.38665 * 14 12 11 16 16 C 1.37750 * 132.14706 * 195.85572 * 15 14 12 17 17 C 1.38531 * 119.96318 * 179.08323 * 16 15 14 18 18 F 1.35105 * 120.14488 * 180.02562 * 17 16 15 19 19 C 1.38479 * 119.71298 * 0.02562 * 17 16 15 20 20 C 1.37930 * 120.31962 * 0.42061 * 19 17 16 21 21 C 1.38865 * 107.04444 * 15.34059 * 15 14 12 22 22 O 1.36192 * 111.22302 * 1.14771 * 21 15 14 23 23 H 0.97003 * 120.00123 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47410 * 59.99883 * 9 7 2 25 25 H 1.08997 * 109.47244 * 299.99127 * 9 7 2 26 26 H 1.09006 * 109.46932 * 59.99961 * 10 9 7 27 27 H 1.08996 * 109.47188 * 300.00225 * 10 9 7 28 28 H 1.08997 * 109.47200 * 60.00494 * 11 10 9 29 29 H 1.09006 * 109.47468 * 300.00367 * 11 10 9 30 30 H 1.09000 * 110.94127 * 98.23098 * 14 12 11 31 31 H 1.08997 * 110.93692 * 334.54453 * 14 12 11 32 32 H 1.08003 * 120.02012 * 359.07114 * 16 15 14 33 33 H 1.08002 * 119.83600 * 180.13695 * 19 17 16 34 34 H 1.08001 * 119.85961 * 179.71938 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0018 13 1 3.1494 -6.0796 -0.8513 14 6 1.7312 -7.5067 0.0071 15 6 2.6300 -8.3534 0.8873 16 6 2.7169 -9.7144 1.0819 17 6 3.6641 -10.2299 1.9514 18 9 3.7529 -11.5641 2.1447 19 6 4.5197 -9.3717 2.6217 20 6 4.4265 -8.0085 2.4338 21 6 3.4785 -7.4834 1.5592 22 8 3.2137 -6.1875 1.2343 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8906 27 1 2.8719 -3.6043 -0.8894 28 1 0.8534 -5.0451 -0.8886 29 1 0.8538 -5.0446 0.8914 30 1 1.6694 -7.9209 -0.9992 31 1 0.7389 -7.4054 0.4467 32 1 2.0467 -10.3791 0.5571 33 1 5.2604 -9.7716 3.2984 34 1 5.0946 -7.3457 2.9638 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309152577.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:39 Heat of formation + Delta-G solvation = -91.068374 kcal Electronic energy + Delta-G solvation = -17160.057096 eV Core-core repulsion = 14164.219098 eV Total energy + Delta-G solvation = -2995.837997 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.84963 -42.16333 -38.42808 -36.36788 -34.55210 -33.49968 -31.07539 -30.65913 -28.26245 -25.59268 -23.59233 -22.97308 -22.64504 -21.73929 -18.69789 -18.50161 -18.20710 -18.02261 -16.72821 -16.52237 -16.39672 -15.87824 -15.38240 -15.13896 -14.46063 -14.38506 -14.29086 -13.89467 -13.82404 -13.51150 -13.32401 -13.06654 -12.87307 -12.58597 -12.44640 -12.20525 -11.86307 -11.56463 -11.44162 -11.30221 -10.96465 -10.54857 -10.06955 -9.06120 -8.20104 -6.30945 0.08524 0.14496 1.39530 1.40994 1.52274 2.21502 2.41035 2.50327 3.07223 3.12821 3.45987 3.54994 3.79695 3.96286 4.09067 4.11426 4.25289 4.39424 4.47246 4.57992 4.76940 4.79117 4.91066 4.92481 5.05277 5.10356 5.15501 5.23882 5.26049 5.32081 5.54149 5.61559 5.78384 5.87423 6.16178 6.27114 6.86088 7.38192 8.91616 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.057675 B = 0.003476 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.360738 B = 8052.851155 C = 8397.898148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.098 4.098 11 C -0.107 4.107 12 C 0.082 3.918 13 H 0.097 0.903 14 C -0.100 4.100 15 C -0.154 4.154 16 C -0.103 4.103 17 C 0.052 3.948 18 F -0.143 7.143 19 C -0.112 4.112 20 C -0.121 4.121 21 C 0.077 3.923 22 O -0.318 6.318 23 H 0.264 0.736 24 H -0.002 1.002 25 H -0.011 1.011 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.121 0.879 31 H 0.101 0.899 32 H 0.157 0.843 33 H 0.168 0.832 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.837 -20.881 1.578 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.135 4.135 11 C -0.144 4.144 12 C 0.027 3.973 13 H 0.115 0.885 14 C -0.136 4.136 15 C -0.155 4.155 16 C -0.122 4.122 17 C 0.033 3.967 18 F -0.122 7.122 19 C -0.130 4.130 20 C -0.139 4.139 21 C 0.031 3.969 22 O -0.232 6.232 23 H 0.073 0.927 24 H 0.016 0.984 25 H 0.007 0.993 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.139 0.861 31 H 0.119 0.881 32 H 0.174 0.826 33 H 0.185 0.815 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.746 -20.607 1.689 21.748 hybrid contribution 0.042 0.863 0.059 0.866 sum 6.788 -19.744 1.748 20.951 Atomic orbital electron populations 1.70085 1.07730 1.27763 1.51758 1.25977 0.95806 1.03336 0.94752 0.85464 0.78626 0.78481 0.78594 1.19545 1.20663 1.18967 1.21738 0.93487 0.92677 1.50456 0.92519 1.19029 0.94445 0.93056 0.94881 1.21403 0.98027 0.93721 1.00393 1.21723 0.96926 0.92434 1.03337 1.23604 0.92829 0.95789 0.85058 0.88487 1.21937 0.98679 0.91536 1.01470 1.20796 0.98768 0.93670 1.02232 1.20391 0.98978 0.94025 0.98815 1.17540 1.00259 0.77482 1.01426 1.91484 1.95842 1.30558 1.94285 1.21074 0.99886 0.91605 1.00438 1.20350 0.98308 0.94946 1.00319 1.20071 0.95440 0.84143 0.97241 1.86946 1.72144 1.22927 1.41221 0.92747 0.98407 0.99296 0.93950 0.92736 0.88553 0.92039 0.86124 0.88054 0.82558 0.81496 0.83244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.10 -4.06 5.07 30.60 0.16 -3.90 16 11 C -0.11 -3.39 4.92 30.59 0.15 -3.24 16 12 C 0.08 2.18 3.61 31.17 0.11 2.29 16 13 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 14 C -0.10 -2.01 6.65 30.73 0.20 -1.80 16 15 C -0.15 -3.43 6.27 -19.53 -0.12 -3.55 16 16 C -0.10 -2.00 10.01 22.22 0.22 -1.78 16 17 C 0.05 1.04 7.31 22.40 0.16 1.20 16 18 F -0.14 -2.90 17.27 44.97 0.78 -2.12 16 19 C -0.11 -2.03 10.00 22.25 0.22 -1.80 16 20 C -0.12 -2.59 10.06 22.44 0.23 -2.37 16 21 C 0.08 2.00 7.03 22.67 0.16 2.16 16 22 O -0.32 -9.86 10.49 -95.74 -1.00 -10.87 16 23 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 24 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 26 H 0.04 1.84 7.93 -2.38 -0.02 1.82 16 27 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.10 1.96 7.92 -2.39 -0.02 1.94 16 32 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -67.29 295.45 5.51 -61.78 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: 1.08 Total: 3.94 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 2.34 Total: -42.56 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.28 Total: -57.02 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -1.00 Total: -10.87 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.29 5.51 -61.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309152577.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.284 kcal (2) G-P(sol) polarization free energy of solvation -67.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds