Wall clock time and date at job start Mon Mar 30 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99683 * 3 2 1 5 5 H 1.48505 * 109.47499 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47262 * 150.00006 * 3 2 1 7 7 C 1.37879 * 119.99350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47340 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47340 * 180.02562 * 11 10 9 13 13 H 1.09003 * 110.66637 * 56.75947 * 12 11 10 14 14 C 1.54701 * 110.74701 * 180.17565 * 12 11 10 15 15 C 1.51659 * 101.92790 * 143.61050 * 14 12 11 16 16 C 1.37752 * 132.13262 * 164.10348 * 15 14 12 17 17 C 1.38529 * 119.95759 * 180.96238 * 16 15 14 18 18 F 1.35100 * 120.14826 * 179.97438 * 17 16 15 19 19 C 1.38483 * 119.71157 * 0.02562 * 17 16 15 20 20 C 1.37933 * 120.32506 * 359.81529 * 19 17 16 21 21 C 1.38859 * 107.04975 * 344.62465 * 15 14 12 22 22 O 1.36185 * 111.22648 * 358.90928 * 21 15 14 23 23 H 0.97005 * 119.99656 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 25 25 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 26 26 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 27 27 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 28 28 H 1.09004 * 109.46785 * 299.99692 * 11 10 9 29 29 H 1.09000 * 109.47196 * 59.99588 * 11 10 9 30 30 H 1.08999 * 110.93833 * 261.76856 * 14 12 11 31 31 H 1.08997 * 110.93863 * 25.45783 * 14 12 11 32 32 H 1.08006 * 120.02301 * 0.93703 * 16 15 14 33 33 H 1.08001 * 119.83740 * 179.80361 * 19 17 16 34 34 H 1.07998 * 119.86190 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5514 -2.6368 0.0022 12 6 6.0613 -4.0794 0.0015 13 1 5.6631 -4.6277 -0.8523 14 6 7.6079 -4.1139 0.0071 15 6 7.8914 -5.3167 0.8863 16 6 9.0264 -6.0729 1.0798 17 6 8.9988 -7.1524 1.9475 18 9 10.1095 -7.8970 2.1398 19 6 7.8273 -7.4656 2.6163 20 6 6.6918 -6.7063 2.4250 21 6 6.7137 -5.6166 1.5580 22 8 5.7238 -4.7396 1.2333 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.6806 -0.8889 25 1 3.8745 -0.6801 0.8911 26 1 3.6577 -3.1507 0.8908 27 1 3.6583 -3.1503 -0.8892 28 1 5.9154 -2.1227 -0.8873 29 1 5.9140 -2.1233 0.8927 30 1 7.9978 -4.2664 -0.9993 31 1 8.0162 -3.2045 0.4479 32 1 9.9371 -5.8247 0.5550 33 1 7.8026 -8.3087 3.2909 34 1 5.7821 -6.9575 2.9501 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309152578.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:41 Heat of formation + Delta-G solvation = -70.729976 kcal Electronic energy + Delta-G solvation = -17203.406009 eV Core-core repulsion = 14208.449951 eV Total energy + Delta-G solvation = -2994.956058 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.02346 -41.25230 -37.52988 -34.80695 -33.03822 -32.14334 -30.02789 -29.74143 -27.08602 -23.90157 -22.65186 -22.01873 -21.31950 -20.07127 -17.76449 -17.43418 -17.14839 -16.71024 -15.84496 -15.47233 -14.85953 -14.44798 -14.18635 -13.96031 -13.56524 -13.34450 -13.04301 -12.91033 -12.63897 -12.39988 -12.14245 -11.64369 -11.54491 -11.09297 -11.03444 -10.74015 -10.56104 -9.90213 -9.71070 -9.50040 -9.28394 -9.15759 -8.52361 -8.17545 -6.02642 -4.00349 0.89677 0.97755 3.10332 3.30821 3.34918 3.38413 3.42014 3.90334 4.29560 4.40227 4.46298 4.62170 4.82642 4.90353 5.00710 5.18474 5.31142 5.33984 5.44208 5.56144 5.64717 5.78561 5.82943 5.91231 6.01132 6.12242 6.21648 6.41102 6.58795 6.66297 6.92548 7.06734 7.33848 7.45455 7.81546 8.56562 9.03059 9.59967 11.11047 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.055793 B = 0.003640 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.735689 B = 7691.247373 C = 7981.322350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.119 4.119 12 C 0.083 3.917 13 H 0.090 0.910 14 C -0.108 4.108 15 C -0.150 4.150 16 C -0.104 4.104 17 C 0.059 3.941 18 F -0.142 7.142 19 C -0.117 4.117 20 C -0.115 4.115 21 C 0.108 3.892 22 O -0.288 6.288 23 H 0.262 0.738 24 H 0.010 0.990 25 H 0.015 0.985 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.151 -12.547 1.889 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.140 4.140 11 C -0.156 4.156 12 C 0.028 3.972 13 H 0.107 0.893 14 C -0.145 4.145 15 C -0.151 4.151 16 C -0.123 4.123 17 C 0.040 3.960 18 F -0.120 7.120 19 C -0.136 4.136 20 C -0.134 4.134 21 C 0.062 3.938 22 O -0.201 6.201 23 H 0.072 0.928 24 H 0.028 0.972 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 18.815 -12.385 1.998 22.614 hybrid contribution 0.656 0.801 -0.075 1.038 sum 19.470 -11.584 1.923 22.737 Atomic orbital electron populations 1.69924 1.06317 1.26825 1.51354 1.25055 0.94745 0.99204 0.94658 0.86760 0.80363 0.83612 0.78421 1.20348 1.21423 1.19031 1.21176 0.89620 0.94449 1.50516 0.91058 1.19585 0.97158 0.92336 0.96111 1.21447 0.90948 0.99973 1.01636 1.21903 0.99351 0.91465 1.02892 1.23632 0.92608 0.95712 0.85297 0.89258 1.21962 0.96426 0.96047 1.00040 1.20674 0.93574 0.98687 1.02184 1.20181 0.98645 0.94437 0.99010 1.17355 0.83682 0.93740 1.01259 1.91483 1.50853 1.75420 1.94274 1.20822 0.91061 1.01049 1.00633 1.20125 0.99366 0.93137 1.00760 1.19715 0.87734 0.90651 0.95726 1.87001 1.42002 1.50777 1.40346 0.92787 0.97167 0.96659 0.92063 0.92749 0.90129 0.91163 0.88800 0.88558 0.84670 0.84023 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.22 13.96 55.43 0.77 -27.45 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 10 C -0.10 -1.99 5.07 -26.73 -0.14 -2.13 16 11 C -0.12 -1.76 4.92 -26.73 -0.13 -1.89 16 12 C 0.08 1.08 3.61 -25.83 -0.09 0.99 16 13 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 14 C -0.11 -1.12 6.65 -26.52 -0.18 -1.30 16 15 C -0.15 -1.73 6.27 -104.10 -0.65 -2.39 16 16 C -0.10 -1.08 10.02 -39.65 -0.40 -1.48 16 17 C 0.06 0.63 7.31 -39.38 -0.29 0.34 16 18 F -0.14 -1.56 17.27 2.25 0.04 -1.52 16 19 C -0.12 -1.15 10.00 -39.60 -0.40 -1.55 16 20 C -0.12 -1.27 10.06 -39.31 -0.40 -1.67 16 21 C 0.11 1.41 7.03 -38.97 -0.27 1.14 16 22 O -0.29 -4.34 10.49 -20.33 -0.21 -4.55 16 23 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 25 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 26 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.95 7.92 -51.93 -0.41 0.53 16 32 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 291.85 15.07 4.40 4.40 Total: -1.00 -31.67 291.85 -7.71 -39.38 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -4.56 Total: -3.46 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -3.48 Total: -23.94 kcal Atomic # 7 Polarization: -28.22 SS G_CDS: 0.77 Total: -27.45 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.21 Total: -4.55 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.67 -7.71 -39.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309152578.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.349 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds