Wall clock time and date at job start Mon Mar 30 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99683 * 3 2 1 5 5 H 1.48505 * 109.47499 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47262 * 150.00006 * 3 2 1 7 7 C 1.37879 * 119.99350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47340 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47340 * 180.02562 * 11 10 9 13 13 H 1.09003 * 110.66637 * 56.75947 * 12 11 10 14 14 C 1.54701 * 110.74701 * 180.17565 * 12 11 10 15 15 C 1.51659 * 101.92790 * 143.61050 * 14 12 11 16 16 C 1.37752 * 132.13262 * 164.10348 * 15 14 12 17 17 C 1.38529 * 119.95759 * 180.96238 * 16 15 14 18 18 F 1.35100 * 120.14826 * 179.97438 * 17 16 15 19 19 C 1.38483 * 119.71157 * 0.02562 * 17 16 15 20 20 C 1.37933 * 120.32506 * 359.81529 * 19 17 16 21 21 C 1.38859 * 107.04975 * 344.62465 * 15 14 12 22 22 O 1.36185 * 111.22648 * 358.90928 * 21 15 14 23 23 H 0.97005 * 119.99656 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 25 25 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 26 26 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 27 27 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 28 28 H 1.09004 * 109.46785 * 299.99692 * 11 10 9 29 29 H 1.09000 * 109.47196 * 59.99588 * 11 10 9 30 30 H 1.08999 * 110.93833 * 261.76856 * 14 12 11 31 31 H 1.08997 * 110.93863 * 25.45783 * 14 12 11 32 32 H 1.08006 * 120.02301 * 0.93703 * 16 15 14 33 33 H 1.08001 * 119.83740 * 179.80361 * 19 17 16 34 34 H 1.07998 * 119.86190 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5514 -2.6368 0.0022 12 6 6.0613 -4.0794 0.0015 13 1 5.6631 -4.6277 -0.8523 14 6 7.6079 -4.1139 0.0071 15 6 7.8914 -5.3167 0.8863 16 6 9.0264 -6.0729 1.0798 17 6 8.9988 -7.1524 1.9475 18 9 10.1095 -7.8970 2.1398 19 6 7.8273 -7.4656 2.6163 20 6 6.6918 -6.7063 2.4250 21 6 6.7137 -5.6166 1.5580 22 8 5.7238 -4.7396 1.2333 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.6806 -0.8889 25 1 3.8745 -0.6801 0.8911 26 1 3.6577 -3.1507 0.8908 27 1 3.6583 -3.1503 -0.8892 28 1 5.9154 -2.1227 -0.8873 29 1 5.9140 -2.1233 0.8927 30 1 7.9978 -4.2664 -0.9993 31 1 8.0162 -3.2045 0.4479 32 1 9.9371 -5.8247 0.5550 33 1 7.8026 -8.3087 3.2909 34 1 5.7821 -6.9575 2.9501 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309152578.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:41 Heat of formation + Delta-G solvation = -88.774738 kcal Electronic energy + Delta-G solvation = -17204.188489 eV Core-core repulsion = 14208.449951 eV Total energy + Delta-G solvation = -2995.738538 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.85456 -42.16296 -38.43269 -36.39496 -34.55123 -33.57129 -31.34199 -30.68846 -28.47676 -25.40851 -23.56724 -22.91300 -22.53177 -21.72169 -18.90960 -18.69123 -18.23056 -18.02420 -16.75432 -16.44781 -16.29282 -15.86920 -15.40606 -15.15493 -14.86614 -14.39594 -14.22712 -13.90095 -13.84286 -13.53049 -13.43219 -13.19842 -12.88856 -12.55153 -12.45604 -11.88733 -11.78844 -11.55865 -11.41517 -11.32629 -11.13427 -10.75454 -10.07135 -9.06426 -8.28863 -6.33415 0.08174 0.14114 1.36571 1.39622 1.51738 2.21849 2.37575 2.50517 3.06533 3.07312 3.46006 3.54028 3.79167 3.96717 4.08897 4.11242 4.24483 4.38612 4.45224 4.54079 4.75662 4.78106 4.89168 4.92142 5.03636 5.07826 5.10355 5.13749 5.17485 5.29917 5.56975 5.59479 5.67046 5.69259 6.16463 6.30324 6.75272 7.31250 8.88485 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.055793 B = 0.003640 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.735689 B = 7691.247373 C = 7981.322350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.002 4.002 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.537 4.537 8 H 0.025 0.975 9 C -0.012 4.012 10 C -0.096 4.096 11 C -0.108 4.108 12 C 0.079 3.921 13 H 0.094 0.906 14 C -0.098 4.098 15 C -0.153 4.153 16 C -0.103 4.103 17 C 0.052 3.948 18 F -0.143 7.143 19 C -0.113 4.113 20 C -0.122 4.122 21 C 0.076 3.924 22 O -0.319 6.319 23 H 0.266 0.734 24 H 0.026 0.974 25 H 0.018 0.982 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.106 0.894 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.221 -11.932 1.499 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.198 4.198 3 Si 0.780 3.220 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.575 4.575 8 H 0.044 0.956 9 C -0.050 4.050 10 C -0.134 4.134 11 C -0.145 4.145 12 C 0.023 3.977 13 H 0.111 0.889 14 C -0.134 4.134 15 C -0.154 4.154 16 C -0.122 4.122 17 C 0.033 3.967 18 F -0.122 7.122 19 C -0.131 4.131 20 C -0.141 4.141 21 C 0.031 3.969 22 O -0.234 6.234 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.036 0.964 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.124 0.876 29 H 0.089 0.911 30 H 0.139 0.861 31 H 0.124 0.876 32 H 0.176 0.824 33 H 0.184 0.816 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 21.906 -11.796 1.607 24.932 hybrid contribution -0.377 0.473 0.082 0.611 sum 21.530 -11.323 1.689 24.384 Atomic orbital electron populations 1.70094 1.08504 1.28203 1.52834 1.26137 0.95700 1.03912 0.94054 0.85555 0.79446 0.77614 0.79391 1.18721 1.21174 1.16739 1.21583 0.92616 0.92924 1.50333 0.95625 1.19555 0.93520 0.95215 0.96674 1.21297 0.94734 0.96997 1.00381 1.21777 0.95274 0.93343 1.04123 1.23648 0.94734 0.94308 0.84976 0.88859 1.21941 0.94064 0.95973 1.01448 1.20820 0.93285 0.99144 1.02144 1.20399 0.99119 0.93883 0.98770 1.17546 0.83813 0.93907 1.01453 1.91483 1.50932 1.75473 1.94297 1.21066 0.90296 1.01275 1.00477 1.20350 1.00227 0.92940 1.00577 1.20057 0.88126 0.91479 0.97271 1.86956 1.43364 1.51748 1.41327 0.92527 0.95547 0.96381 0.94375 0.93169 0.87598 0.91142 0.86102 0.87592 0.82444 0.81645 0.83476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.27 13.96 21.45 0.30 -60.97 16 2 C 0.00 -0.12 5.47 84.66 0.46 0.35 16 3 Si 0.96 44.42 27.47 68.60 1.88 46.30 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 7 C -0.54 -31.82 9.66 25.60 0.25 -31.58 16 8 H 0.03 1.68 7.99 -2.91 -0.02 1.66 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.10 -3.76 5.07 30.59 0.16 -3.60 16 11 C -0.11 -2.99 4.92 30.59 0.15 -2.84 16 12 C 0.08 1.92 3.61 31.17 0.11 2.04 16 13 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 14 C -0.10 -1.75 6.65 30.73 0.20 -1.55 16 15 C -0.15 -3.22 6.27 -19.52 -0.12 -3.34 16 16 C -0.10 -1.89 10.02 22.22 0.22 -1.67 16 17 C 0.05 1.01 7.31 22.40 0.16 1.17 16 18 F -0.14 -2.84 17.27 44.97 0.78 -2.06 16 19 C -0.11 -2.03 10.00 22.26 0.22 -1.80 16 20 C -0.12 -2.61 10.06 22.45 0.23 -2.39 16 21 C 0.08 1.93 7.03 22.67 0.16 2.09 16 22 O -0.32 -9.60 10.49 -95.66 -1.00 -10.60 16 23 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 24 H 0.03 1.15 7.57 -2.39 -0.02 1.13 16 25 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 26 H 0.04 1.62 7.93 -2.38 -0.02 1.60 16 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.11 2.41 8.14 -2.38 -0.02 2.39 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.11 1.72 7.92 -2.39 -0.02 1.70 16 32 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -70.41 291.85 5.31 -65.09 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.03 Total: 5.81 kcal Atomic # 6 Polarization: -45.90 SS G_CDS: 2.33 Total: -43.57 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: 0.30 Total: -60.97 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -1.00 Total: -10.60 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -70.41 5.31 -65.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309152578.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.682 kcal (2) G-P(sol) polarization free energy of solvation -70.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds