Wall clock time and date at job start Mon Mar 30 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35782 * 116.99805 * 2 1 4 4 C 1.38453 * 120.21678 * 270.00361 * 3 2 1 5 5 C 1.39468 * 119.97272 * 180.02562 * 4 3 2 6 6 C 1.39465 * 120.24612 * 0.02562 * 5 4 3 7 7 C 1.36302 * 120.58954 * 359.96267 * 6 5 4 8 8 C 1.40864 * 120.07776 * 0.02562 * 7 6 5 9 9 C 1.41042 * 120.22981 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99491 * 204.84859 * 9 8 7 11 11 C 1.39854 * 120.00185 * 24.85083 * 9 8 7 12 12 N 1.30934 * 119.99773 * 17.76807 * 11 9 8 13 13 Si 1.86797 * 120.00346 * 197.77057 * 11 9 8 14 14 H 1.48504 * 109.46822 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47467 * 119.99556 * 13 11 9 16 16 H 1.48502 * 109.47005 * 240.00008 * 13 11 9 17 17 O 1.36394 * 108.56470 * 180.02562 * 5 4 3 18 18 C 1.43955 * 105.56154 * 342.64131 * 17 5 4 19 19 C 1.53002 * 110.56943 * 268.68271 * 18 17 5 20 20 C 1.53007 * 110.69258 * 145.88823 * 18 17 5 21 21 O 1.36635 * 131.40142 * 0.03118 * 4 3 2 22 22 H 1.09002 * 109.46510 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46657 * 299.99550 * 1 2 3 24 24 H 1.08998 * 109.46913 * 59.99892 * 1 2 3 25 25 H 1.07992 * 119.70573 * 179.97438 * 6 5 4 26 26 H 1.07997 * 119.96009 * 180.02562 * 7 6 5 27 27 H 0.97003 * 120.00115 * 180.02562 * 12 11 9 28 28 H 1.08998 * 109.47254 * 175.04452 * 19 18 17 29 29 H 1.09007 * 109.47112 * 295.04771 * 19 18 17 30 30 H 1.08998 * 109.47088 * 55.04352 * 19 18 17 31 31 H 1.09005 * 109.46432 * 304.87778 * 20 18 17 32 32 H 1.08997 * 109.47236 * 64.87644 * 20 18 17 33 33 H 1.08999 * 109.46748 * 184.88511 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 2.3617 1.8307 -1.1964 5 6 2.9953 3.0732 -1.1905 6 6 3.3129 3.6940 0.0173 7 6 3.0090 3.0978 1.2047 8 6 2.3688 1.8431 1.2211 9 6 2.0533 1.2229 2.4480 10 1 1.9469 0.1494 2.4986 11 6 1.8782 1.9981 3.5988 12 7 1.6600 3.2849 3.4943 13 14 1.9559 1.1978 5.2848 14 1 2.2118 -0.2569 5.1309 15 1 3.0525 1.8129 6.0748 16 1 0.6643 1.4009 5.9891 17 8 3.1943 3.4654 -2.4816 18 6 3.0497 2.2724 -3.2742 19 6 4.4031 1.5836 -3.4607 20 6 2.4224 2.5977 -4.6313 21 8 2.1655 1.4471 -2.4930 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 3.8039 4.6559 0.0117 26 1 3.2592 3.5878 2.1340 27 1 1.5389 3.8227 4.2925 28 1 4.2609 0.6395 -3.9865 29 1 5.0617 2.2282 -4.0430 30 1 4.8510 1.3926 -2.4856 31 1 1.4776 3.1196 -4.4790 32 1 3.1001 3.2324 -5.2021 33 1 2.2424 1.6729 -5.1794 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309182300.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:45 Heat of formation + Delta-G solvation = -86.560703 kcal Electronic energy + Delta-G solvation = -18775.632787 eV Core-core repulsion = 15767.617467 eV Total energy + Delta-G solvation = -3008.015319 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.10622 -37.88821 -35.79565 -34.88694 -33.65126 -31.97446 -29.19878 -28.14250 -27.27353 -25.91998 -24.73170 -21.57993 -21.27689 -20.69137 -18.11168 -17.11245 -16.02979 -15.79163 -15.48847 -14.78804 -14.64888 -14.15315 -14.08820 -13.46695 -13.13045 -12.70860 -12.47490 -12.09624 -12.04477 -11.90987 -11.78660 -11.64591 -11.33365 -11.22201 -11.16366 -11.04345 -10.74703 -10.37519 -9.80617 -9.72378 -9.10248 -8.83309 -7.40599 -6.94556 -6.93804 -4.44853 2.49354 2.60535 3.01090 3.03981 3.08359 3.78121 3.85823 4.26874 4.38237 4.90436 5.03962 5.12661 5.50876 5.64621 5.71666 5.79214 5.89422 6.03450 6.13600 6.17692 6.24946 6.34972 6.44346 6.49723 6.58794 6.84076 6.98104 7.05779 7.30731 7.48945 7.77519 7.88305 8.21235 8.31112 8.55993 8.66871 9.00090 9.99070 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.034262 B = 0.007115 C = 0.006344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.031661 B = 3934.217449 C = 4412.806664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.320 6.320 3 C -0.020 4.020 4 C 0.051 3.949 5 C -0.102 4.102 6 C -0.075 4.075 7 C -0.153 4.153 8 C 0.111 3.889 9 C -0.435 4.435 10 H 0.089 0.911 11 C 0.073 3.927 12 N -0.785 5.785 13 Si 0.914 3.086 14 H -0.257 1.257 15 H -0.270 1.270 16 H -0.273 1.273 17 O -0.313 6.313 18 C 0.253 3.747 19 C -0.179 4.179 20 C -0.141 4.141 21 O -0.310 6.310 22 H 0.072 0.928 23 H 0.044 0.956 24 H 0.027 0.973 25 H 0.102 0.898 26 H 0.135 0.865 27 H 0.284 0.716 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 -1.096 -5.830 6.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.236 6.236 3 C -0.066 4.066 4 C 0.006 3.994 5 C -0.145 4.145 6 C -0.094 4.094 7 C -0.173 4.173 8 C 0.108 3.892 9 C -0.463 4.463 10 H 0.107 0.893 11 C -0.146 4.146 12 N -0.409 5.409 13 Si 0.738 3.262 14 H -0.181 1.181 15 H -0.195 1.195 16 H -0.198 1.198 17 O -0.232 6.232 18 C 0.178 3.822 19 C -0.237 4.237 20 C -0.198 4.198 21 O -0.227 6.227 22 H 0.090 0.910 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.121 0.879 26 H 0.153 0.847 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.105 -1.018 -5.881 6.070 hybrid contribution -0.204 -0.013 0.611 0.644 sum 0.902 -1.030 -5.269 5.444 Atomic orbital electron populations 1.22787 0.82661 1.00691 0.99767 1.85986 1.17843 1.25790 1.94010 1.17637 1.09661 0.91198 0.88071 1.19926 1.01693 0.93977 0.83763 1.19154 1.14484 0.96373 0.84537 1.19497 1.01742 0.99360 0.88764 1.20784 1.02700 0.97724 0.96061 1.17556 0.89839 0.91051 0.90797 1.19503 1.39828 0.95697 0.91293 0.89271 1.26015 0.91993 0.94645 1.01932 1.69866 1.32105 1.06778 1.32162 0.86154 0.78738 0.80921 0.80421 1.18067 1.19464 1.19843 1.87155 1.90008 1.30753 1.15263 1.24085 0.89500 0.78166 0.90494 1.22479 0.96443 1.01106 1.03658 1.21827 1.01910 1.02772 0.93263 1.87322 1.60342 1.59653 1.15419 0.90969 0.93702 0.95408 0.87949 0.84718 0.90473 0.90819 0.90829 0.91183 0.91067 0.90343 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 11.13 101.05 1.12 1.88 16 2 O -0.32 -7.97 9.71 -19.06 -0.19 -8.15 16 3 C -0.02 -0.53 5.76 -38.34 -0.22 -0.75 16 4 C 0.05 1.28 6.90 -39.04 -0.27 1.01 16 5 C -0.10 -2.50 6.96 -38.67 -0.27 -2.77 16 6 C -0.07 -1.78 9.98 -39.82 -0.40 -2.18 16 7 C -0.15 -3.88 8.63 -39.29 -0.34 -4.21 16 8 C 0.11 2.94 5.58 -106.68 -0.60 2.34 16 9 C -0.43 -11.20 8.71 -37.92 -0.33 -11.53 16 10 H 0.09 2.29 7.65 -52.49 -0.40 1.89 16 11 C 0.07 1.75 5.13 -17.33 -0.09 1.66 16 12 N -0.78 -19.13 10.97 55.54 0.61 -18.52 16 13 Si 0.91 17.84 29.60 -169.99 -5.03 12.81 16 14 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 15 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 16 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 17 O -0.31 -6.98 10.81 -45.34 -0.49 -7.47 16 18 C 0.25 4.85 1.61 -26.73 -0.04 4.81 16 19 C -0.18 -2.92 9.19 37.16 0.34 -2.58 16 20 C -0.14 -2.04 9.39 37.16 0.35 -1.69 16 21 O -0.31 -7.14 10.82 -46.50 -0.50 -7.64 16 22 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 23 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 26 H 0.14 3.39 6.17 -52.49 -0.32 3.07 16 27 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 30 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 285.43 15.07 4.30 4.30 Total: -1.00 -28.91 285.43 -6.11 -35.02 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.08 Total: 3.65 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -0.74 Total: -14.01 kcal Atomic # 7 Polarization: -19.13 SS G_CDS: 0.61 Total: -18.52 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -1.18 Total: -23.26 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.91 -6.11 -35.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309182300.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.538 kcal (2) G-P(sol) polarization free energy of solvation -28.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds