Wall clock time and date at job start Mon Mar 30 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35782 * 116.99805 * 2 1 4 4 C 1.38453 * 120.21678 * 270.00361 * 3 2 1 5 5 C 1.39468 * 119.97272 * 180.02562 * 4 3 2 6 6 C 1.39465 * 120.24612 * 0.02562 * 5 4 3 7 7 C 1.36302 * 120.58954 * 359.96267 * 6 5 4 8 8 C 1.40864 * 120.07776 * 0.02562 * 7 6 5 9 9 C 1.41042 * 120.22981 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99491 * 204.84859 * 9 8 7 11 11 C 1.39854 * 120.00185 * 24.85083 * 9 8 7 12 12 N 1.30934 * 119.99773 * 17.76807 * 11 9 8 13 13 Si 1.86797 * 120.00346 * 197.77057 * 11 9 8 14 14 H 1.48504 * 109.46822 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47467 * 119.99556 * 13 11 9 16 16 H 1.48502 * 109.47005 * 240.00008 * 13 11 9 17 17 O 1.36394 * 108.56470 * 180.02562 * 5 4 3 18 18 C 1.43955 * 105.56154 * 342.64131 * 17 5 4 19 19 C 1.53002 * 110.56943 * 268.68271 * 18 17 5 20 20 C 1.53007 * 110.69258 * 145.88823 * 18 17 5 21 21 O 1.36635 * 131.40142 * 0.03118 * 4 3 2 22 22 H 1.09002 * 109.46510 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46657 * 299.99550 * 1 2 3 24 24 H 1.08998 * 109.46913 * 59.99892 * 1 2 3 25 25 H 1.07992 * 119.70573 * 179.97438 * 6 5 4 26 26 H 1.07997 * 119.96009 * 180.02562 * 7 6 5 27 27 H 0.97003 * 120.00115 * 180.02562 * 12 11 9 28 28 H 1.08998 * 109.47254 * 175.04452 * 19 18 17 29 29 H 1.09007 * 109.47112 * 295.04771 * 19 18 17 30 30 H 1.08998 * 109.47088 * 55.04352 * 19 18 17 31 31 H 1.09005 * 109.46432 * 304.87778 * 20 18 17 32 32 H 1.08997 * 109.47236 * 64.87644 * 20 18 17 33 33 H 1.08999 * 109.46748 * 184.88511 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 2.3617 1.8307 -1.1964 5 6 2.9953 3.0732 -1.1905 6 6 3.3129 3.6940 0.0173 7 6 3.0090 3.0978 1.2047 8 6 2.3688 1.8431 1.2211 9 6 2.0533 1.2229 2.4480 10 1 1.9469 0.1494 2.4986 11 6 1.8782 1.9981 3.5988 12 7 1.6600 3.2849 3.4943 13 14 1.9559 1.1978 5.2848 14 1 2.2118 -0.2569 5.1309 15 1 3.0525 1.8129 6.0748 16 1 0.6643 1.4009 5.9891 17 8 3.1943 3.4654 -2.4816 18 6 3.0497 2.2724 -3.2742 19 6 4.4031 1.5836 -3.4607 20 6 2.4224 2.5977 -4.6313 21 8 2.1655 1.4471 -2.4930 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 3.8039 4.6559 0.0117 26 1 3.2592 3.5878 2.1340 27 1 1.5389 3.8227 4.2925 28 1 4.2609 0.6395 -3.9865 29 1 5.0617 2.2282 -4.0430 30 1 4.8510 1.3926 -2.4856 31 1 1.4776 3.1196 -4.4790 32 1 3.1001 3.2324 -5.2021 33 1 2.2424 1.6729 -5.1794 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309182300.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:45 Heat of formation + Delta-G solvation = -103.862413 kcal Electronic energy + Delta-G solvation = -18776.383045 eV Core-core repulsion = 15767.617467 eV Total energy + Delta-G solvation = -3008.765578 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.82277 -39.73627 -37.64455 -36.64297 -35.44040 -33.46828 -31.07682 -29.96446 -28.52798 -27.66701 -26.58972 -23.43803 -22.97530 -22.37834 -19.93641 -18.95716 -17.81943 -17.52953 -17.19886 -16.55855 -16.30103 -15.84139 -15.79993 -15.12619 -14.86996 -14.38544 -13.82676 -13.75650 -13.54993 -13.33078 -13.29646 -13.11274 -12.95077 -12.89784 -12.78258 -12.70985 -12.44661 -12.01645 -11.57320 -11.53753 -10.89535 -10.68613 -9.31667 -8.81312 -8.75595 -6.38045 0.63126 0.70782 1.40918 1.46938 1.56760 2.12406 2.20913 2.54348 2.73848 3.07966 3.59377 3.69441 3.76394 4.15157 4.39084 4.46813 4.49663 4.56841 4.62947 4.64997 4.74321 4.76505 4.82973 4.94623 5.00645 5.12935 5.17770 5.22230 5.44909 5.61204 5.84290 5.96162 6.31984 6.46960 6.63778 6.76609 7.10830 8.21004 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.034262 B = 0.007115 C = 0.006344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.031661 B = 3934.217449 C = 4412.806664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.337 6.337 3 C -0.043 4.043 4 C 0.040 3.960 5 C -0.108 4.108 6 C -0.078 4.078 7 C -0.166 4.166 8 C 0.086 3.914 9 C -0.461 4.461 10 H 0.080 0.920 11 C 0.039 3.961 12 N -0.808 5.808 13 Si 0.987 3.013 14 H -0.260 1.260 15 H -0.258 1.258 16 H -0.263 1.263 17 O -0.321 6.321 18 C 0.233 3.767 19 C -0.174 4.174 20 C -0.135 4.135 21 O -0.325 6.325 22 H 0.110 0.890 23 H 0.032 0.968 24 H 0.027 0.973 25 H 0.126 0.874 26 H 0.131 0.869 27 H 0.296 0.704 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.365 -1.274 -6.334 6.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.254 6.254 3 C -0.088 4.088 4 C -0.005 4.005 5 C -0.152 4.152 6 C -0.097 4.097 7 C -0.186 4.186 8 C 0.082 3.918 9 C -0.489 4.489 10 H 0.098 0.902 11 C -0.178 4.178 12 N -0.433 5.433 13 Si 0.807 3.193 14 H -0.184 1.184 15 H -0.183 1.183 16 H -0.188 1.188 17 O -0.240 6.240 18 C 0.159 3.841 19 C -0.232 4.232 20 C -0.191 4.191 21 O -0.242 6.242 22 H 0.128 0.872 23 H 0.051 0.949 24 H 0.046 0.954 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.290 -1.182 -6.417 6.651 hybrid contribution -0.288 0.050 0.645 0.709 sum 1.002 -1.133 -5.771 5.966 Atomic orbital electron populations 1.22938 0.80682 1.03019 0.99136 1.85909 1.19798 1.25600 1.94090 1.17863 1.10612 0.91725 0.88615 1.20051 1.01622 0.94341 0.84497 1.19321 1.14061 0.96223 0.85574 1.19718 1.01397 1.00158 0.88385 1.20776 1.03538 0.97811 0.96464 1.17893 0.90530 0.91875 0.91475 1.19617 1.41472 0.95479 0.92307 0.90220 1.26822 0.90806 0.95030 1.05144 1.69876 1.31563 1.07936 1.33926 0.85069 0.79300 0.79537 0.75358 1.18392 1.18265 1.18762 1.87127 1.90023 1.32502 1.14363 1.24907 0.90869 0.77064 0.91213 1.22493 0.95098 1.02659 1.02910 1.21926 1.01853 1.04549 0.90816 1.87288 1.61583 1.60660 1.14681 0.87153 0.94895 0.95403 0.85598 0.85097 0.89287 0.88582 0.87718 0.93993 0.91922 0.87313 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 11.13 113.37 1.26 2.80 16 2 O -0.34 -17.15 9.71 -91.11 -0.88 -18.04 16 3 C -0.04 -2.30 5.76 23.08 0.13 -2.17 16 4 C 0.04 2.03 6.90 22.62 0.16 2.18 16 5 C -0.11 -5.33 6.96 22.86 0.16 -5.17 16 6 C -0.08 -3.77 9.98 22.11 0.22 -3.55 16 7 C -0.17 -8.65 8.63 22.46 0.19 -8.46 16 8 C 0.09 4.69 5.58 -21.19 -0.12 4.57 16 9 C -0.46 -24.37 8.71 23.35 0.20 -24.17 16 10 H 0.08 4.23 7.65 -2.91 -0.02 4.20 16 11 C 0.04 1.88 5.13 85.22 0.44 2.32 16 12 N -0.81 -39.60 10.97 21.82 0.24 -39.36 16 13 Si 0.99 36.21 29.60 68.60 2.03 38.24 16 14 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 15 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 16 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 17 O -0.32 -14.07 10.81 -74.81 -0.81 -14.88 16 18 C 0.23 8.61 1.61 30.60 0.05 8.66 16 19 C -0.17 -5.33 9.19 71.98 0.66 -4.66 16 20 C -0.13 -3.51 9.39 71.98 0.68 -2.83 16 21 O -0.32 -14.89 10.82 -77.28 -0.84 -15.73 16 22 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 23 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.13 5.34 8.06 -2.91 -0.02 5.31 16 26 H 0.13 6.77 6.17 -2.91 -0.02 6.75 16 27 H 0.30 12.84 8.30 -92.71 -0.77 12.08 16 28 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 30 H 0.04 1.50 7.93 -2.39 -0.02 1.49 16 31 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -63.75 285.43 4.89 -58.86 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 1.11 Total: 21.38 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 4.03 Total: -30.49 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.24 Total: -39.36 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -2.53 Total: -48.65 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.24 kcal Total: -63.75 4.89 -58.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309182300.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.999 kcal (2) G-P(sol) polarization free energy of solvation -63.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds