Wall clock time and date at job start Mon Mar 30 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.50697 * 109.47466 * 119.99690 * 2 1 3 5 5 O 1.20833 * 120.00046 * 119.99902 * 4 2 1 6 6 O 1.34228 * 120.00167 * 300.00387 * 4 2 1 7 7 C 1.50706 * 109.47238 * 240.00039 * 2 1 3 8 8 C 1.38167 * 120.02421 * 299.99685 * 7 2 1 9 9 C 1.38243 * 120.05381 * 179.97438 * 8 7 2 10 10 C 1.50707 * 119.94235 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46797 * 90.00489 * 10 9 8 12 12 H 1.08000 * 120.00103 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99653 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00001 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99745 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47156 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47131 * 120.00300 * 15 13 11 18 18 H 1.48506 * 109.47080 * 240.00203 * 15 13 11 19 19 C 1.38290 * 120.11176 * 0.02783 * 9 8 7 20 20 C 1.38120 * 120.05467 * 0.02562 * 19 9 8 21 21 C 1.38706 * 120.02901 * 119.72135 * 7 2 1 22 22 O 1.35899 * 120.05735 * 0.02562 * 21 7 2 23 23 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00084 * 1 2 3 25 25 H 1.08996 * 109.46952 * 60.00255 * 1 2 3 26 26 H 0.96700 * 117.00515 * 179.97438 * 6 4 2 27 27 H 1.07999 * 119.97383 * 359.97438 * 8 7 2 28 28 H 1.08999 * 109.46775 * 210.00471 * 10 9 8 29 29 H 1.08994 * 109.47006 * 330.00078 * 10 9 8 30 30 H 0.97002 * 119.99559 * 180.02562 * 14 13 11 31 31 H 1.07997 * 119.97172 * 179.97438 * 19 9 8 32 32 H 1.07997 * 120.02300 * 179.97438 * 20 19 9 33 33 H 0.96692 * 114.00305 * 89.99573 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.7271 -1.6927 1.1196 6 8 1.7081 -0.2517 2.4496 7 6 2.0324 -0.7104 -1.2305 8 6 1.6989 -2.0332 -1.4496 9 6 2.1590 -2.6853 -2.5784 10 6 1.7943 -4.1284 -2.8147 11 6 0.5120 -4.1998 -3.6032 12 1 0.0111 -3.2911 -3.9029 13 6 -0.0216 -5.4251 -3.9420 14 7 0.5882 -6.5316 -3.5766 15 14 -1.6114 -5.5136 -4.9188 16 1 -2.0946 -4.1386 -5.2036 17 1 -1.3672 -6.2269 -6.1981 18 1 -2.6359 -6.2458 -4.1316 19 6 2.9542 -2.0161 -3.4906 20 6 3.2912 -0.6940 -3.2756 21 6 2.8251 -0.0352 -2.1468 22 8 3.1502 1.2674 -1.9361 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.0536 -0.7408 3.2089 27 1 1.0784 -2.5582 -0.7385 28 1 2.5921 -4.6180 -3.3732 29 1 1.6603 -4.6308 -1.8567 30 1 0.2129 -7.3936 -3.8153 31 1 3.3127 -2.5278 -4.3715 32 1 3.9126 -0.1719 -3.9881 33 1 3.9675 1.3926 -1.4349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309194686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:50 Heat of formation + Delta-G solvation = -127.134336 kcal Electronic energy + Delta-G solvation = -18036.562791 eV Core-core repulsion = 15026.788067 eV Total energy + Delta-G solvation = -3009.774724 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.56903 -39.17588 -36.57474 -36.05452 -34.31279 -33.01486 -30.56001 -29.19542 -26.64358 -25.07875 -23.21460 -22.71632 -21.02049 -19.55051 -18.11181 -17.82863 -16.61966 -16.32693 -15.67519 -15.28464 -15.14078 -14.68167 -14.19257 -13.43186 -13.35681 -13.12309 -12.61552 -12.39726 -12.06368 -11.90304 -11.71213 -11.56366 -11.26976 -11.13239 -11.06259 -10.54885 -10.54561 -10.30534 -9.97171 -9.57213 -9.42301 -8.43989 -8.30797 -7.69317 -6.05211 -4.09380 1.74897 1.93334 2.28488 3.13180 3.28555 3.36244 3.41244 4.19375 4.44210 4.58390 4.66894 5.01806 5.19916 5.29302 5.40141 5.48388 5.73348 5.79627 5.92182 6.06172 6.12635 6.23649 6.41130 6.49219 6.53070 6.88807 7.05635 7.12429 7.37827 7.56343 7.81286 7.90742 7.93620 7.95675 8.30135 8.96253 9.54590 11.04665 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.006236 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.330618 B = 4489.118080 C = 4954.532990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.032 4.032 3 H 0.116 0.884 4 C 0.476 3.524 5 O -0.498 6.498 6 O -0.520 6.520 7 C -0.110 4.110 8 C -0.075 4.075 9 C -0.039 4.039 10 C 0.048 3.952 11 C -0.512 4.512 12 H 0.058 0.942 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.103 4.103 20 C -0.146 4.146 21 C 0.079 3.921 22 O -0.500 6.500 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.406 0.594 27 H 0.119 0.881 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.262 0.738 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.452 13.817 8.213 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.051 4.051 3 H 0.134 0.866 4 C 0.318 3.682 5 O -0.384 6.384 6 O -0.332 6.332 7 C -0.111 4.111 8 C -0.093 4.093 9 C -0.039 4.039 10 C 0.011 3.989 11 C -0.550 4.550 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.722 3.278 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.122 4.122 20 C -0.164 4.164 21 C 0.035 3.965 22 O -0.309 6.309 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.265 0.735 27 H 0.137 0.863 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 2.954 13.671 7.510 15.875 hybrid contribution -0.139 -0.592 0.216 0.645 sum 2.815 13.080 7.725 15.449 Atomic orbital electron populations 1.21788 0.91162 1.03597 1.03199 1.19726 0.98368 1.00131 0.86892 0.86580 1.23594 0.77329 0.82797 0.84525 1.90782 1.35151 1.25464 1.86995 1.84528 1.72652 1.59130 1.16874 1.19439 1.02134 0.94685 0.94811 1.20727 0.98846 0.92339 0.97410 1.20704 0.92165 0.99247 0.91756 1.18365 0.97030 0.85601 0.97928 1.21099 1.07123 0.92392 1.34389 0.92356 1.25015 0.97546 0.95682 0.96082 1.69971 1.39471 0.97489 1.46308 0.86489 0.83316 0.78196 0.79787 1.19624 1.20906 1.20934 1.21035 0.98324 0.93420 0.99381 1.21224 1.02121 0.95014 0.98043 1.17990 0.99863 0.83343 0.95327 1.84824 1.46173 1.22262 1.77609 0.91480 0.91313 0.90675 0.73527 0.86331 0.95168 0.95209 0.92869 0.85804 0.86210 0.76833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.94 37.16 0.33 -1.42 16 2 C -0.03 -0.44 2.97 -92.92 -0.28 -0.72 16 3 H 0.12 1.37 6.99 -51.93 -0.36 1.01 16 4 C 0.48 6.66 7.50 36.00 0.27 6.93 16 5 O -0.50 -8.83 15.87 -18.76 -0.30 -9.12 16 6 O -0.52 -5.40 13.33 -39.25 -0.52 -5.93 16 7 C -0.11 -1.88 4.41 -104.47 -0.46 -2.34 16 8 C -0.08 -1.52 7.58 -39.61 -0.30 -1.82 16 9 C -0.04 -0.85 5.07 -104.60 -0.53 -1.39 16 10 C 0.05 1.24 5.10 -29.03 -0.15 1.09 16 11 C -0.51 -14.36 9.09 -34.44 -0.31 -14.67 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 15 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 C -0.10 -2.03 9.69 -39.61 -0.38 -2.41 16 20 C -0.15 -2.47 9.99 -39.43 -0.39 -2.87 16 21 C 0.08 1.29 6.68 -39.22 -0.26 1.03 16 22 O -0.50 -6.67 12.27 -19.42 -0.24 -6.91 16 23 H 0.07 0.91 7.39 -51.93 -0.38 0.53 16 24 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.41 2.56 9.10 45.56 0.41 2.97 16 27 H 0.12 2.45 7.52 -52.49 -0.39 2.05 16 28 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 29 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 32 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 33 H 0.38 3.32 9.06 45.56 0.41 3.74 16 LS Contribution 292.74 15.07 4.41 4.41 Total: -1.00 -33.41 292.74 -5.88 -39.29 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -2.38 Total: 4.56 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -2.56 Total: -17.03 kcal Atomic # 7 Polarization: -26.52 SS G_CDS: 0.74 Total: -25.78 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -1.06 Total: -21.96 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.41 -5.88 -39.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309194686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.848 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds