Wall clock time and date at job start Mon Mar 30 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.50697 * 109.47466 * 119.99690 * 2 1 3 5 5 O 1.20833 * 120.00046 * 119.99902 * 4 2 1 6 6 O 1.34228 * 120.00167 * 300.00387 * 4 2 1 7 7 C 1.50706 * 109.47238 * 240.00039 * 2 1 3 8 8 C 1.38167 * 120.02421 * 299.99685 * 7 2 1 9 9 C 1.38243 * 120.05381 * 179.97438 * 8 7 2 10 10 C 1.50707 * 119.94235 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46797 * 90.00489 * 10 9 8 12 12 H 1.08000 * 120.00103 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99653 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00001 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99745 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47156 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47131 * 120.00300 * 15 13 11 18 18 H 1.48506 * 109.47080 * 240.00203 * 15 13 11 19 19 C 1.38290 * 120.11176 * 0.02783 * 9 8 7 20 20 C 1.38120 * 120.05467 * 0.02562 * 19 9 8 21 21 C 1.38706 * 120.02901 * 119.72135 * 7 2 1 22 22 O 1.35899 * 120.05735 * 0.02562 * 21 7 2 23 23 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00084 * 1 2 3 25 25 H 1.08996 * 109.46952 * 60.00255 * 1 2 3 26 26 H 0.96700 * 117.00515 * 179.97438 * 6 4 2 27 27 H 1.07999 * 119.97383 * 359.97438 * 8 7 2 28 28 H 1.08999 * 109.46775 * 210.00471 * 10 9 8 29 29 H 1.08994 * 109.47006 * 330.00078 * 10 9 8 30 30 H 0.97002 * 119.99559 * 180.02562 * 14 13 11 31 31 H 1.07997 * 119.97172 * 179.97438 * 19 9 8 32 32 H 1.07997 * 120.02300 * 179.97438 * 20 19 9 33 33 H 0.96692 * 114.00305 * 89.99573 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.7271 -1.6927 1.1196 6 8 1.7081 -0.2517 2.4496 7 6 2.0324 -0.7104 -1.2305 8 6 1.6989 -2.0332 -1.4496 9 6 2.1590 -2.6853 -2.5784 10 6 1.7943 -4.1284 -2.8147 11 6 0.5120 -4.1998 -3.6032 12 1 0.0111 -3.2911 -3.9029 13 6 -0.0216 -5.4251 -3.9420 14 7 0.5882 -6.5316 -3.5766 15 14 -1.6114 -5.5136 -4.9188 16 1 -2.0946 -4.1386 -5.2036 17 1 -1.3672 -6.2269 -6.1981 18 1 -2.6359 -6.2458 -4.1316 19 6 2.9542 -2.0161 -3.4906 20 6 3.2912 -0.6940 -3.2756 21 6 2.8251 -0.0352 -2.1468 22 8 3.1502 1.2674 -1.9361 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.0536 -0.7408 3.2089 27 1 1.0784 -2.5582 -0.7385 28 1 2.5921 -4.6180 -3.3732 29 1 1.6603 -4.6308 -1.8567 30 1 0.2129 -7.3936 -3.8153 31 1 3.3127 -2.5278 -4.3715 32 1 3.9126 -0.1719 -3.9881 33 1 3.9675 1.3926 -1.4349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309194686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:50 Heat of formation + Delta-G solvation = -150.999024 kcal Electronic energy + Delta-G solvation = -18037.597641 eV Core-core repulsion = 15026.788067 eV Total energy + Delta-G solvation = -3010.809575 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.74317 -40.43761 -37.88329 -37.10513 -35.65053 -34.93347 -32.30797 -30.55103 -28.46542 -26.17561 -25.14055 -24.00473 -22.44339 -20.86652 -19.29143 -18.93427 -18.53198 -17.75285 -16.92685 -16.74004 -16.41632 -16.28956 -15.61980 -14.70952 -14.64705 -14.52629 -14.41070 -13.73097 -13.53357 -13.38483 -13.10452 -12.90154 -12.81541 -12.55301 -12.49228 -12.37672 -12.29095 -11.56710 -11.43581 -11.38758 -11.26086 -10.63545 -9.73004 -9.23896 -8.21910 -6.36135 0.34244 0.48453 1.20394 1.38516 1.38627 1.52705 2.12531 2.38179 2.83813 3.08474 3.33466 3.47197 3.90291 4.14339 4.16386 4.32856 4.38168 4.56795 4.58681 4.80326 4.90744 5.02614 5.04593 5.23210 5.31316 5.32924 5.45348 5.52620 5.61398 5.72090 5.95579 6.01550 6.16186 6.76823 6.88900 7.00781 7.32770 8.87756 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.006236 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.330618 B = 4489.118080 C = 4954.532990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 H 0.146 0.854 4 C 0.485 3.515 5 O -0.544 6.544 6 O -0.504 6.504 7 C -0.109 4.109 8 C -0.086 4.086 9 C -0.075 4.075 10 C 0.058 3.942 11 C -0.527 4.527 12 H 0.056 0.944 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.967 3.033 16 H -0.263 1.263 17 H -0.274 1.274 18 H -0.276 1.276 19 C -0.113 4.113 20 C -0.140 4.140 21 C 0.099 3.901 22 O -0.493 6.493 23 H 0.045 0.955 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.427 0.573 27 H 0.100 0.900 28 H 0.005 0.995 29 H -0.004 1.004 30 H 0.266 0.734 31 H 0.123 0.877 32 H 0.153 0.847 33 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 16.858 8.364 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.050 4.050 3 H 0.164 0.836 4 C 0.328 3.672 5 O -0.434 6.434 6 O -0.318 6.318 7 C -0.110 4.110 8 C -0.104 4.104 9 C -0.075 4.075 10 C 0.021 3.979 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.195 4.195 14 N -0.572 5.572 15 Si 0.791 3.209 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.202 1.202 19 C -0.131 4.131 20 C -0.158 4.158 21 C 0.054 3.946 22 O -0.305 6.305 23 H 0.064 0.936 24 H 0.114 0.886 25 H 0.097 0.903 26 H 0.288 0.712 27 H 0.118 0.882 28 H 0.023 0.977 29 H 0.014 0.986 30 H 0.075 0.925 31 H 0.141 0.859 32 H 0.171 0.829 33 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 2.512 16.745 7.702 18.602 hybrid contribution 0.073 -1.405 0.289 1.437 sum 2.585 15.339 7.991 17.488 Atomic orbital electron populations 1.21790 0.90243 1.02738 1.04738 1.19820 0.99037 1.00874 0.85269 0.83611 1.23588 0.76233 0.81834 0.85538 1.90788 1.37435 1.27445 1.87720 1.84465 1.72016 1.58813 1.16504 1.19686 1.01465 0.93469 0.96369 1.20579 0.99338 0.93950 0.96546 1.20392 0.95467 0.97431 0.94255 1.18074 0.95888 0.88466 0.95460 1.21403 1.07954 0.92539 1.34629 0.92532 1.25967 1.01271 0.95158 0.97081 1.70101 1.41367 0.98173 1.47541 0.85363 0.78658 0.78573 0.78279 1.18724 1.19991 1.20170 1.21049 0.98280 0.94849 0.98958 1.21495 1.01752 0.93776 0.98814 1.17994 0.98145 0.84154 0.94301 1.84760 1.47919 1.19694 1.78115 0.93564 0.88572 0.90334 0.71190 0.88226 0.97659 0.98582 0.92529 0.85881 0.82935 0.73664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.94 71.98 0.64 -2.50 16 2 C -0.03 -0.78 2.97 -12.29 -0.04 -0.81 16 3 H 0.15 2.77 6.99 -2.39 -0.02 2.75 16 4 C 0.48 12.72 7.50 71.23 0.53 13.25 16 5 O -0.54 -19.25 15.87 21.94 0.35 -18.90 16 6 O -0.50 -9.04 13.33 -51.40 -0.68 -9.73 16 7 C -0.11 -3.60 4.41 -19.77 -0.09 -3.69 16 8 C -0.09 -3.59 7.58 22.25 0.17 -3.42 16 9 C -0.08 -3.50 5.07 -19.85 -0.10 -3.60 16 10 C 0.06 3.25 5.10 29.10 0.15 3.40 16 11 C -0.53 -30.86 9.09 25.60 0.23 -30.63 16 12 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 13 C 0.00 0.19 5.46 84.66 0.46 0.65 16 14 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 15 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 16 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 C -0.11 -4.49 9.69 22.25 0.22 -4.27 16 20 C -0.14 -4.46 9.99 22.37 0.22 -4.24 16 21 C 0.10 2.95 6.68 22.51 0.15 3.10 16 22 O -0.49 -10.78 12.27 -92.41 -1.13 -11.91 16 23 H 0.05 1.24 7.39 -2.39 -0.02 1.22 16 24 H 0.10 1.66 8.11 -2.39 -0.02 1.64 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.43 4.24 9.10 -74.06 -0.67 3.57 16 27 H 0.10 4.42 7.52 -2.91 -0.02 4.39 16 28 H 0.01 0.30 8.08 -2.39 -0.02 0.28 16 29 H 0.00 -0.25 8.08 -2.39 -0.02 -0.27 16 30 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 31 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 32 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 33 H 0.41 4.95 9.06 -74.06 -0.67 4.28 16 Total: -1.00 -75.23 292.74 3.20 -72.03 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -0.20 Total: 11.49 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 2.55 Total: -32.76 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.28 Total: -57.10 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -1.47 Total: -40.54 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -75.23 3.20 -72.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309194686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.969 kcal (2) G-P(sol) polarization free energy of solvation -75.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds