Wall clock time and date at job start Mon Mar 30 2020 06:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38263 * 119.97503 * 2 1 4 4 C 1.38178 * 120.02461 * 180.02562 * 3 2 1 5 5 C 1.38479 * 119.97722 * 359.70264 * 4 3 2 6 6 F 1.35100 * 120.02973 * 180.30018 * 5 4 3 7 7 C 1.38443 * 119.94623 * 0.57374 * 5 4 3 8 8 C 1.50695 * 120.01487 * 179.72600 * 7 5 4 9 9 H 1.09008 * 110.35202 * 34.03565 * 8 7 5 10 10 C 1.54950 * 110.30983 * 271.89038 * 8 7 5 11 11 C 1.55450 * 100.98690 * 204.68735 * 10 8 7 12 12 C 1.54387 * 102.18539 * 34.03938 * 11 10 8 13 13 H 1.08998 * 109.82798 * 98.30146 * 12 11 10 14 14 C 1.50698 * 109.82951 * 219.17603 * 12 11 10 15 15 H 1.08005 * 119.99819 * 359.81852 * 14 12 11 16 16 C 1.37875 * 120.00046 * 179.81193 * 14 12 11 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 O 1.43229 * 107.66494 * 338.73862 * 12 11 10 23 23 C 1.38217 * 119.97094 * 359.44715 * 7 5 4 24 24 H 1.09001 * 109.47174 * 269.97554 * 1 2 3 25 25 H 1.09000 * 109.47052 * 29.98349 * 1 2 3 26 26 H 1.09005 * 109.46764 * 149.97666 * 1 2 3 27 27 H 1.07999 * 119.99008 * 0.02562 * 3 2 1 28 28 H 1.08006 * 120.00821 * 179.97438 * 4 3 2 29 29 H 1.08997 * 111.12241 * 322.55644 * 10 8 7 30 30 H 1.08997 * 111.12501 * 86.67634 * 10 8 7 31 31 H 1.08993 * 110.83551 * 275.88818 * 11 10 8 32 32 H 1.09006 * 110.92017 * 152.22542 * 11 10 8 33 33 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 34 34 H 1.07999 * 119.98577 * 180.23326 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1989 -0.0005 5 6 4.2725 0.0000 0.0052 6 9 5.6235 -0.0001 0.0108 7 6 3.5798 -1.1987 -0.0006 8 6 4.3324 -2.5043 -0.0007 9 1 5.2531 -2.4112 0.5754 10 6 4.6485 -2.9427 -1.4528 11 6 4.7908 -4.4803 -1.2737 12 6 3.7572 -4.7763 -0.1657 13 1 2.8311 -5.1392 -0.6115 14 6 4.3069 -5.8100 0.7831 15 1 5.2913 -6.2233 0.6202 16 6 3.5531 -6.2281 1.8592 17 7 2.3542 -5.7252 2.0573 18 14 4.2347 -7.5089 3.0358 19 1 3.2362 -7.7848 4.0999 20 1 5.4865 -6.9995 3.6511 21 1 4.5229 -8.7612 2.2915 22 8 3.5115 -3.5530 0.5375 23 6 2.1976 -1.1974 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6572 2.1327 0.0004 28 1 4.1189 2.1346 -0.0010 29 1 3.8246 -2.7012 -2.1243 30 1 5.5805 -2.4991 -1.8031 31 1 5.7969 -4.7409 -0.9454 32 1 4.5338 -5.0048 -2.1941 33 1 2.0004 -5.0598 1.4466 34 1 1.6570 -2.1323 -0.0013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309202881.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:42 Heat of formation + Delta-G solvation = -84.386350 kcal Electronic energy + Delta-G solvation = -18313.692777 eV Core-core repulsion = 15318.144534 eV Total energy + Delta-G solvation = -2995.548243 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.65200 -39.38953 -37.92462 -33.17953 -32.23986 -31.27295 -31.07394 -27.71611 -26.44727 -24.52048 -22.62020 -21.57373 -20.55654 -19.95569 -17.40549 -17.02782 -16.53572 -15.51145 -15.38217 -14.88743 -14.22579 -13.79849 -13.71779 -13.59249 -13.48375 -13.23619 -13.11232 -12.33707 -12.02129 -11.92513 -11.63285 -11.34847 -11.13190 -10.81084 -10.72918 -10.51995 -10.34342 -10.10040 -9.92438 -9.17253 -8.68217 -8.44102 -8.26650 -7.87307 -6.33595 -4.11828 1.31357 1.43208 3.44860 3.47533 3.65766 3.72872 4.45406 4.55029 4.69057 4.85345 4.96889 5.12216 5.28445 5.39256 5.45937 5.49630 5.62882 5.68460 5.68975 5.89961 6.03786 6.06875 6.15229 6.22842 6.28441 6.39299 6.44040 6.52697 6.67143 6.69580 6.79035 7.10891 7.37405 8.11613 8.24954 8.54926 8.89918 9.71340 11.07777 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.025179 B = 0.006591 C = 0.005911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.784218 B = 4247.394741 C = 4735.585283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.103 4.103 4 C -0.156 4.156 5 C 0.091 3.909 6 F -0.141 7.141 7 C -0.101 4.101 8 C 0.120 3.880 9 H 0.069 0.931 10 C -0.146 4.146 11 C -0.136 4.136 12 C 0.188 3.812 13 H 0.032 0.968 14 C -0.620 4.620 15 H 0.052 0.948 16 C 0.033 3.967 17 N -0.891 5.891 18 Si 1.067 2.933 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.288 1.288 22 O -0.370 6.370 23 C -0.065 4.065 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.279 0.721 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.630 12.270 -5.939 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.121 4.121 4 C -0.174 4.174 5 C 0.072 3.928 6 F -0.120 7.120 7 C -0.102 4.102 8 C 0.062 3.938 9 H 0.087 0.913 10 C -0.183 4.183 11 C -0.174 4.174 12 C 0.133 3.867 13 H 0.050 0.950 14 C -0.657 4.657 15 H 0.070 0.930 16 C -0.175 4.175 17 N -0.525 5.525 18 Si 0.895 3.105 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.214 1.214 22 O -0.290 6.290 23 C -0.083 4.083 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.090 11.418 -4.417 12.291 hybrid contribution 0.946 0.941 -1.517 2.020 sum -0.144 12.359 -5.934 13.711 Atomic orbital electron populations 1.20759 0.90862 1.02635 1.02515 1.20002 0.96483 0.92908 1.00742 1.20785 0.92963 0.97755 1.00630 1.20978 0.94974 0.96518 1.04966 1.17502 0.76728 0.93984 1.04594 1.91460 1.29114 1.97394 1.94021 1.20198 0.94929 0.93949 1.01122 1.21394 0.93020 0.85830 0.93579 0.91346 1.23247 1.01244 0.97459 0.96399 1.23113 1.01595 0.93145 0.99514 1.20485 0.93356 0.83018 0.89829 0.95010 1.22231 1.04909 1.24076 1.14500 0.92965 1.25819 0.94737 0.99341 0.97638 1.70678 1.16263 1.27375 1.38207 0.83596 0.75510 0.75318 0.76076 1.20710 1.21419 1.21422 1.88660 1.62549 1.18228 1.59606 1.20935 0.92697 0.98419 0.96264 0.91029 0.91774 0.91273 0.85526 0.85135 0.91395 0.91290 0.91248 0.91980 0.90994 0.84156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 36.01 0.36 -0.89 16 2 C -0.10 -1.44 5.88 -104.62 -0.62 -2.05 16 3 C -0.10 -1.31 9.70 -39.59 -0.38 -1.70 16 4 C -0.16 -2.14 10.03 -39.51 -0.40 -2.54 16 5 C 0.09 1.53 7.25 -39.42 -0.29 1.24 16 6 F -0.14 -2.42 16.58 2.25 0.04 -2.38 16 7 C -0.10 -1.88 5.10 -104.56 -0.53 -2.41 16 8 C 0.12 2.55 3.44 -26.86 -0.09 2.45 16 9 H 0.07 1.52 7.81 -51.92 -0.41 1.11 16 10 C -0.15 -2.72 6.56 -24.40 -0.16 -2.88 16 11 C -0.14 -2.85 6.54 -24.70 -0.16 -3.01 16 12 C 0.19 4.83 2.94 -27.16 -0.08 4.75 16 13 H 0.03 0.86 7.99 -51.93 -0.41 0.45 16 14 C -0.62 -17.74 8.75 -34.44 -0.30 -18.04 16 15 H 0.05 1.47 7.52 -52.48 -0.39 1.08 16 16 C 0.03 0.96 5.41 -17.82 -0.10 0.86 16 17 N -0.89 -27.37 13.55 55.43 0.75 -26.62 16 18 Si 1.07 25.49 29.90 -169.99 -5.08 20.40 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 O -0.37 -9.44 8.38 -35.23 -0.30 -9.74 16 23 C -0.07 -1.14 9.03 -39.59 -0.36 -1.50 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 26 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 27 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 29 H 0.07 1.19 8.05 -51.93 -0.42 0.77 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.47 7.66 -51.93 -0.40 1.07 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.28 8.59 6.54 -40.82 -0.27 8.32 16 34 H 0.14 2.64 7.35 -52.49 -0.39 2.26 16 LS Contribution 289.98 15.07 4.37 4.37 Total: -1.00 -31.37 289.98 -7.76 -39.12 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.43 Total: 0.54 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -3.10 Total: -25.70 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.75 Total: -26.62 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.30 Total: -9.74 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.37 -7.76 -39.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309202881.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.263 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds