Wall clock time and date at job start Mon Mar 30 2020 06:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38263 * 119.97503 * 2 1 4 4 C 1.38178 * 120.02461 * 180.02562 * 3 2 1 5 5 C 1.38479 * 119.97722 * 359.70264 * 4 3 2 6 6 F 1.35100 * 120.02973 * 180.30018 * 5 4 3 7 7 C 1.38443 * 119.94623 * 0.57374 * 5 4 3 8 8 C 1.50695 * 120.01487 * 179.72600 * 7 5 4 9 9 H 1.09008 * 110.35202 * 34.03565 * 8 7 5 10 10 C 1.54950 * 110.30983 * 271.89038 * 8 7 5 11 11 C 1.55450 * 100.98690 * 204.68735 * 10 8 7 12 12 C 1.54387 * 102.18539 * 34.03938 * 11 10 8 13 13 H 1.08998 * 109.82798 * 98.30146 * 12 11 10 14 14 C 1.50698 * 109.82951 * 219.17603 * 12 11 10 15 15 H 1.08005 * 119.99819 * 359.81852 * 14 12 11 16 16 C 1.37875 * 120.00046 * 179.81193 * 14 12 11 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 O 1.43229 * 107.66494 * 338.73862 * 12 11 10 23 23 C 1.38217 * 119.97094 * 359.44715 * 7 5 4 24 24 H 1.09001 * 109.47174 * 269.97554 * 1 2 3 25 25 H 1.09000 * 109.47052 * 29.98349 * 1 2 3 26 26 H 1.09005 * 109.46764 * 149.97666 * 1 2 3 27 27 H 1.07999 * 119.99008 * 0.02562 * 3 2 1 28 28 H 1.08006 * 120.00821 * 179.97438 * 4 3 2 29 29 H 1.08997 * 111.12241 * 322.55644 * 10 8 7 30 30 H 1.08997 * 111.12501 * 86.67634 * 10 8 7 31 31 H 1.08993 * 110.83551 * 275.88818 * 11 10 8 32 32 H 1.09006 * 110.92017 * 152.22542 * 11 10 8 33 33 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 34 34 H 1.07999 * 119.98577 * 180.23326 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1989 -0.0005 5 6 4.2725 0.0000 0.0052 6 9 5.6235 -0.0001 0.0108 7 6 3.5798 -1.1987 -0.0006 8 6 4.3324 -2.5043 -0.0007 9 1 5.2531 -2.4112 0.5754 10 6 4.6485 -2.9427 -1.4528 11 6 4.7908 -4.4803 -1.2737 12 6 3.7572 -4.7763 -0.1657 13 1 2.8311 -5.1392 -0.6115 14 6 4.3069 -5.8100 0.7831 15 1 5.2913 -6.2233 0.6202 16 6 3.5531 -6.2281 1.8592 17 7 2.3542 -5.7252 2.0573 18 14 4.2347 -7.5089 3.0358 19 1 3.2362 -7.7848 4.0999 20 1 5.4865 -6.9995 3.6511 21 1 4.5229 -8.7612 2.2915 22 8 3.5115 -3.5530 0.5375 23 6 2.1976 -1.1974 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6572 2.1327 0.0004 28 1 4.1189 2.1346 -0.0010 29 1 3.8246 -2.7012 -2.1243 30 1 5.5805 -2.4991 -1.8031 31 1 5.7969 -4.7409 -0.9454 32 1 4.5338 -5.0048 -2.1941 33 1 2.0004 -5.0598 1.4466 34 1 1.6570 -2.1323 -0.0013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309202881.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:42 Heat of formation + Delta-G solvation = -102.091912 kcal Electronic energy + Delta-G solvation = -18314.460548 eV Core-core repulsion = 15318.144534 eV Total energy + Delta-G solvation = -2996.316014 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.93606 -40.84025 -39.48301 -35.12472 -33.61271 -32.85840 -32.61094 -29.44790 -27.55265 -26.40417 -24.16591 -22.91422 -22.39115 -21.40832 -19.15636 -18.68424 -17.92159 -17.01836 -16.68014 -16.43301 -15.77333 -15.57335 -15.44492 -14.98705 -14.82553 -14.47503 -14.43808 -14.01865 -13.63237 -13.20884 -12.90766 -12.66424 -12.63934 -12.54025 -12.40000 -12.16312 -11.95205 -11.83818 -11.68468 -11.11212 -10.64648 -10.09604 -9.81060 -9.42680 -8.65082 -6.44173 0.10738 0.23431 1.50266 1.59073 1.78248 2.52255 2.55414 2.96629 3.26318 3.36298 3.55302 3.70827 3.85132 3.90569 4.04091 4.20728 4.27129 4.36459 4.45375 4.57931 4.69308 4.75841 4.82527 4.86992 4.93732 4.98754 5.02280 5.15339 5.26119 5.32505 5.46251 5.56884 5.93289 5.94630 6.05971 6.51806 6.61896 7.49213 8.75385 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.025179 B = 0.006591 C = 0.005911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.784218 B = 4247.394741 C = 4735.585283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.097 4.097 3 C -0.088 4.088 4 C -0.143 4.143 5 C 0.073 3.927 6 F -0.148 7.148 7 C -0.126 4.126 8 C 0.112 3.888 9 H 0.049 0.951 10 C -0.129 4.129 11 C -0.129 4.129 12 C 0.180 3.820 13 H 0.006 0.994 14 C -0.638 4.638 15 H 0.052 0.948 16 C -0.021 4.021 17 N -0.918 5.918 18 Si 1.115 2.885 19 H -0.282 1.282 20 H -0.275 1.275 21 H -0.264 1.264 22 O -0.396 6.396 23 C -0.090 4.090 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.173 0.827 28 H 0.166 0.834 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.264 0.736 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.445 14.450 -6.465 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.106 4.106 4 C -0.161 4.161 5 C 0.054 3.946 6 F -0.127 7.127 7 C -0.127 4.127 8 C 0.054 3.946 9 H 0.067 0.933 10 C -0.167 4.167 11 C -0.167 4.167 12 C 0.124 3.876 13 H 0.024 0.976 14 C -0.675 4.675 15 H 0.070 0.930 16 C -0.222 4.222 17 N -0.554 5.554 18 Si 0.936 3.064 19 H -0.208 1.208 20 H -0.201 1.201 21 H -0.189 1.189 22 O -0.316 6.316 23 C -0.108 4.108 24 H 0.095 0.905 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.191 0.809 28 H 0.183 0.817 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.893 13.608 -4.969 14.515 hybrid contribution 0.855 0.372 -1.382 1.668 sum -0.038 13.981 -6.352 15.356 Atomic orbital electron populations 1.20839 0.88716 1.03962 1.03215 1.20346 0.98090 0.92228 0.99084 1.21298 0.92680 0.98728 0.97874 1.21407 0.95577 0.96467 1.02639 1.17704 0.76592 0.94430 1.05865 1.91437 1.29582 1.97441 1.94223 1.20021 0.95389 0.93332 1.03961 1.21504 0.92209 0.86340 0.94545 0.93339 1.23174 1.02885 0.95469 0.95145 1.23017 0.99769 0.95241 0.98661 1.20406 0.93395 0.83036 0.90739 0.97615 1.22664 1.04863 1.24934 1.15020 0.92987 1.27370 0.94394 1.00908 0.99574 1.70800 1.17595 1.28310 1.38655 0.82986 0.75205 0.73857 0.74310 1.20757 1.20060 1.18913 1.88581 1.63511 1.19094 1.60447 1.20828 0.92457 0.98897 0.98667 0.90514 0.88462 0.92003 0.80933 0.81691 0.90249 0.88720 0.91586 0.89877 0.92602 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.23 10.01 71.24 0.71 -1.52 16 2 C -0.10 -2.58 5.88 -19.86 -0.12 -2.70 16 3 C -0.09 -1.87 9.70 22.26 0.22 -1.66 16 4 C -0.14 -3.42 10.03 22.31 0.22 -3.19 16 5 C 0.07 2.37 7.25 22.38 0.16 2.53 16 6 F -0.15 -4.96 16.58 44.97 0.75 -4.21 16 7 C -0.13 -4.77 5.10 -19.82 -0.10 -4.87 16 8 C 0.11 4.92 3.44 30.51 0.10 5.02 16 9 H 0.05 2.26 7.81 -2.38 -0.02 2.24 16 10 C -0.13 -4.82 6.56 32.10 0.21 -4.61 16 11 C -0.13 -5.48 6.54 31.91 0.21 -5.27 16 12 C 0.18 9.66 2.94 30.32 0.09 9.74 16 13 H 0.01 0.35 7.99 -2.39 -0.02 0.34 16 14 C -0.64 -37.65 8.75 25.60 0.22 -37.43 16 15 H 0.05 2.98 7.52 -2.91 -0.02 2.96 16 16 C -0.02 -1.26 5.41 84.65 0.46 -0.80 16 17 N -0.92 -58.72 13.55 21.45 0.29 -58.42 16 18 Si 1.12 51.88 29.90 68.60 2.05 53.93 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 22 O -0.40 -21.35 8.38 -148.98 -1.25 -22.60 16 23 C -0.09 -3.23 9.03 22.26 0.20 -3.03 16 24 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.10 1.33 8.08 -2.39 -0.02 1.31 16 26 H 0.06 1.33 8.09 -2.38 -0.02 1.32 16 27 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 28 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 29 H 0.08 2.76 8.05 -2.39 -0.02 2.74 16 30 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.07 2.81 7.66 -2.39 -0.02 2.80 16 32 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 33 H 0.26 17.25 6.54 -92.71 -0.61 16.65 16 34 H 0.11 4.53 7.35 -2.91 -0.02 4.51 16 Total: -1.00 -71.64 289.98 5.68 -65.95 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.25 Total: 13.13 kcal Atomic # 6 Polarization: -50.37 SS G_CDS: 2.59 Total: -47.78 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.29 Total: -58.42 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -1.25 Total: -22.60 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.75 Total: -4.21 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 2.05 Total: 53.93 kcal Total: -71.64 5.68 -65.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309202881.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.140 kcal (2) G-P(sol) polarization free energy of solvation -71.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds