Wall clock time and date at job start Mon Mar 30 2020 06:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38263 * 119.97452 * 2 1 4 4 C 1.38178 * 120.02708 * 179.70231 * 3 2 1 5 5 C 1.38485 * 119.97209 * 0.28174 * 4 3 2 6 6 F 1.35097 * 120.02451 * 179.97438 * 5 4 3 7 7 C 1.38437 * 119.94727 * 359.97438 * 5 4 3 8 8 C 1.50709 * 120.00847 * 180.02562 * 7 5 4 9 9 H 1.08996 * 110.32941 * 324.29315 * 8 7 5 10 10 C 1.54475 * 110.36988 * 86.55091 * 8 7 5 11 11 C 1.54688 * 103.97977 * 142.73603 * 10 8 7 12 12 C 1.54480 * 104.07672 * 0.13286 * 11 10 8 13 13 H 1.08999 * 110.37253 * 94.76413 * 12 11 10 14 14 C 1.50701 * 110.37048 * 217.09885 * 12 11 10 15 15 H 1.07996 * 120.00072 * 356.83747 * 14 12 11 16 16 C 1.37883 * 120.00076 * 176.83130 * 14 12 11 17 17 N 1.31514 * 119.99464 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 119.99990 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47256 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46865 * 120.00372 * 18 16 14 21 21 H 1.48503 * 109.47360 * 240.00075 * 18 16 14 22 22 O 1.44429 * 110.36591 * 202.04781 * 8 7 5 23 23 C 1.38218 * 119.97959 * 359.97438 * 7 5 4 24 24 H 1.09004 * 109.47608 * 89.99382 * 1 2 3 25 25 H 1.09000 * 109.47215 * 209.99675 * 1 2 3 26 26 H 1.09004 * 109.47168 * 329.99166 * 1 2 3 27 27 H 1.08002 * 119.98986 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.01510 * 180.25956 * 4 3 2 29 29 H 1.09003 * 110.50885 * 261.45121 * 10 8 7 30 30 H 1.09003 * 110.51585 * 24.16204 * 10 8 7 31 31 H 1.09000 * 110.58080 * 241.44655 * 11 10 8 32 32 H 1.08996 * 110.54488 * 118.80008 * 11 10 8 33 33 H 0.97001 * 119.99480 * 180.02562 * 17 16 14 34 34 H 1.07997 * 119.99238 * 180.02562 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5795 1.1990 0.0062 5 6 4.2725 0.0000 0.0065 6 9 5.6234 0.0000 0.0121 7 6 3.5797 -1.1986 0.0012 8 6 4.3324 -2.5042 0.0021 9 1 5.2432 -2.4167 -0.5901 10 6 4.6700 -2.9293 1.4484 11 6 4.5050 -4.4673 1.4341 12 6 4.0910 -4.7872 -0.0195 13 1 4.9658 -5.0511 -0.6138 14 6 3.0821 -5.9064 -0.0433 15 1 2.7936 -6.3930 0.8766 16 6 2.5271 -6.3089 -1.2396 17 7 2.8788 -5.7165 -2.3599 18 14 1.2771 -7.6966 -1.2692 19 1 1.0550 -8.1924 0.1128 20 1 -0.0049 -7.1961 -1.8270 21 1 1.7868 -8.8042 -2.1170 22 8 3.4985 -3.5656 -0.5119 23 6 2.1975 -1.1974 -0.0040 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5140 27 1 1.6572 2.1327 -0.0004 28 1 4.1189 2.1346 0.0105 29 1 5.6953 -2.6556 1.6974 30 1 3.9713 -2.4771 2.1524 31 1 3.7247 -4.7754 2.1300 32 1 5.4482 -4.9555 1.6788 33 1 2.4881 -5.9995 -3.2014 34 1 1.6569 -2.1323 -0.0077 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309202883.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:44 Heat of formation + Delta-G solvation = -78.721317 kcal Electronic energy + Delta-G solvation = -18264.553394 eV Core-core repulsion = 15269.250805 eV Total energy + Delta-G solvation = -2995.302589 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.58952 -39.26002 -37.71348 -32.98766 -32.19821 -31.25597 -30.84183 -27.90553 -26.40306 -24.77135 -22.63705 -21.50983 -20.36808 -19.62987 -17.34482 -16.69920 -16.25253 -15.38981 -15.10837 -14.95244 -14.41720 -13.85001 -13.74989 -13.64103 -13.45491 -13.09922 -12.75042 -12.34965 -11.89819 -11.83848 -11.69445 -11.38402 -10.99260 -10.96150 -10.62659 -10.43258 -10.32012 -10.04224 -9.72037 -9.14198 -8.68647 -8.56366 -8.22890 -8.06403 -6.03613 -4.16663 1.39104 1.52062 3.28263 3.36275 3.39876 3.81867 4.39877 4.53010 4.80558 4.92899 5.05637 5.20386 5.37260 5.44957 5.57859 5.64984 5.70594 5.75105 5.78535 5.97521 6.11651 6.18568 6.27593 6.36730 6.37421 6.52332 6.64716 6.71938 6.78513 6.81100 6.90433 7.19918 7.48113 7.86405 8.18399 8.47238 8.94216 9.53925 11.04033 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.006930 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.387723 B = 4039.192639 C = 4758.224111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.104 4.104 4 C -0.157 4.157 5 C 0.089 3.911 6 F -0.142 7.142 7 C -0.092 4.092 8 C 0.102 3.898 9 H 0.062 0.938 10 C -0.141 4.141 11 C -0.145 4.145 12 C 0.205 3.795 13 H 0.026 0.974 14 C -0.530 4.530 15 H 0.065 0.935 16 C 0.076 3.924 17 N -0.862 5.862 18 Si 0.892 3.108 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.283 1.283 22 O -0.340 6.340 23 C -0.062 4.062 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.261 0.739 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.006 11.979 5.172 13.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.103 4.103 3 C -0.122 4.122 4 C -0.176 4.176 5 C 0.070 3.930 6 F -0.121 7.121 7 C -0.093 4.093 8 C 0.042 3.958 9 H 0.080 0.920 10 C -0.179 4.179 11 C -0.183 4.183 12 C 0.150 3.850 13 H 0.044 0.956 14 C -0.567 4.567 15 H 0.083 0.917 16 C -0.130 4.130 17 N -0.498 5.498 18 Si 0.719 3.281 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.209 1.209 22 O -0.260 6.260 23 C -0.080 4.080 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.144 0.856 28 H 0.148 0.852 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.165 11.994 4.846 12.988 hybrid contribution -0.130 -0.627 -0.048 0.642 sum -1.296 11.367 4.798 12.406 Atomic orbital electron populations 1.20753 0.90954 1.02628 1.02410 1.20008 0.96451 0.92939 1.00890 1.20772 0.92962 0.97719 1.00763 1.20951 0.94958 0.96463 1.05232 1.17514 0.76675 0.94027 1.04763 1.91451 1.29175 1.97403 1.94055 1.19990 0.94828 0.93518 1.01008 1.21504 0.93183 0.87050 0.94028 0.92002 1.22930 1.00602 0.97692 0.96710 1.23079 1.00545 0.93051 1.01650 1.20552 0.94273 0.83476 0.86722 0.95595 1.21060 1.26594 1.15529 0.93529 0.91660 1.25096 0.96202 0.96016 0.95637 1.70055 1.41743 1.39990 0.97988 0.86555 0.81359 0.81949 0.78225 1.19595 1.20836 1.20871 1.89507 1.49118 1.14215 1.73114 1.21015 0.92757 0.98576 0.95622 0.91151 0.91201 0.91862 0.85640 0.85239 0.91975 0.91859 0.91593 0.92572 0.92933 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.01 36.00 0.36 -0.94 16 2 C -0.10 -1.51 5.88 -104.62 -0.62 -2.12 16 3 C -0.10 -1.36 9.70 -39.59 -0.38 -1.74 16 4 C -0.16 -2.20 10.03 -39.51 -0.40 -2.60 16 5 C 0.09 1.52 7.25 -39.42 -0.29 1.23 16 6 F -0.14 -2.44 16.61 2.25 0.04 -2.40 16 7 C -0.09 -1.76 5.00 -104.55 -0.52 -2.28 16 8 C 0.10 2.16 3.26 -27.10 -0.09 2.07 16 9 H 0.06 1.34 7.86 -51.93 -0.41 0.93 16 10 C -0.14 -2.70 6.63 -25.07 -0.17 -2.86 16 11 C -0.15 -3.07 6.62 -25.07 -0.17 -3.24 16 12 C 0.21 5.32 3.11 -27.11 -0.08 5.24 16 13 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 14 C -0.53 -14.78 8.78 -34.44 -0.30 -15.08 16 15 H 0.07 1.76 7.59 -52.49 -0.40 1.37 16 16 C 0.08 2.15 5.42 -17.82 -0.10 2.06 16 17 N -0.86 -25.53 12.94 55.43 0.72 -24.81 16 18 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 O -0.34 -8.83 9.39 -35.23 -0.33 -9.16 16 23 C -0.06 -1.12 9.03 -39.59 -0.36 -1.48 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 26 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.14 7.87 -51.93 -0.41 0.74 16 31 H 0.07 1.38 7.72 -51.93 -0.40 0.98 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.15 2.90 7.32 -52.49 -0.38 2.52 16 LS Contribution 292.02 15.07 4.40 4.40 Total: -1.00 -30.26 292.02 -7.81 -38.07 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.51 Total: -0.53 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -3.10 Total: -21.74 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.72 Total: -24.81 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.33 Total: -9.16 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.26 -7.81 -38.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309202883.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.649 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds