Wall clock time and date at job start Mon Mar 30 2020 06:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38263 * 119.97452 * 2 1 4 4 C 1.38178 * 120.02708 * 179.70231 * 3 2 1 5 5 C 1.38485 * 119.97209 * 0.28174 * 4 3 2 6 6 F 1.35097 * 120.02451 * 179.97438 * 5 4 3 7 7 C 1.38437 * 119.94727 * 359.97438 * 5 4 3 8 8 C 1.50709 * 120.00847 * 180.02562 * 7 5 4 9 9 H 1.08996 * 110.32941 * 324.29315 * 8 7 5 10 10 C 1.54475 * 110.36988 * 86.55091 * 8 7 5 11 11 C 1.54688 * 103.97977 * 142.73603 * 10 8 7 12 12 C 1.54480 * 104.07672 * 0.13286 * 11 10 8 13 13 H 1.08999 * 110.37253 * 94.76413 * 12 11 10 14 14 C 1.50701 * 110.37048 * 217.09885 * 12 11 10 15 15 H 1.07996 * 120.00072 * 356.83747 * 14 12 11 16 16 C 1.37883 * 120.00076 * 176.83130 * 14 12 11 17 17 N 1.31514 * 119.99464 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 119.99990 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47256 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46865 * 120.00372 * 18 16 14 21 21 H 1.48503 * 109.47360 * 240.00075 * 18 16 14 22 22 O 1.44429 * 110.36591 * 202.04781 * 8 7 5 23 23 C 1.38218 * 119.97959 * 359.97438 * 7 5 4 24 24 H 1.09004 * 109.47608 * 89.99382 * 1 2 3 25 25 H 1.09000 * 109.47215 * 209.99675 * 1 2 3 26 26 H 1.09004 * 109.47168 * 329.99166 * 1 2 3 27 27 H 1.08002 * 119.98986 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.01510 * 180.25956 * 4 3 2 29 29 H 1.09003 * 110.50885 * 261.45121 * 10 8 7 30 30 H 1.09003 * 110.51585 * 24.16204 * 10 8 7 31 31 H 1.09000 * 110.58080 * 241.44655 * 11 10 8 32 32 H 1.08996 * 110.54488 * 118.80008 * 11 10 8 33 33 H 0.97001 * 119.99480 * 180.02562 * 17 16 14 34 34 H 1.07997 * 119.99238 * 180.02562 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5795 1.1990 0.0062 5 6 4.2725 0.0000 0.0065 6 9 5.6234 0.0000 0.0121 7 6 3.5797 -1.1986 0.0012 8 6 4.3324 -2.5042 0.0021 9 1 5.2432 -2.4167 -0.5901 10 6 4.6700 -2.9293 1.4484 11 6 4.5050 -4.4673 1.4341 12 6 4.0910 -4.7872 -0.0195 13 1 4.9658 -5.0511 -0.6138 14 6 3.0821 -5.9064 -0.0433 15 1 2.7936 -6.3930 0.8766 16 6 2.5271 -6.3089 -1.2396 17 7 2.8788 -5.7165 -2.3599 18 14 1.2771 -7.6966 -1.2692 19 1 1.0550 -8.1924 0.1128 20 1 -0.0049 -7.1961 -1.8270 21 1 1.7868 -8.8042 -2.1170 22 8 3.4985 -3.5656 -0.5119 23 6 2.1975 -1.1974 -0.0040 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5140 27 1 1.6572 2.1327 -0.0004 28 1 4.1189 2.1346 0.0105 29 1 5.6953 -2.6556 1.6974 30 1 3.9713 -2.4771 2.1524 31 1 3.7247 -4.7754 2.1300 32 1 5.4482 -4.9555 1.6788 33 1 2.4881 -5.9995 -3.2014 34 1 1.6569 -2.1323 -0.0077 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309202883.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:44 Heat of formation + Delta-G solvation = -95.622609 kcal Electronic energy + Delta-G solvation = -18265.286289 eV Core-core repulsion = 15269.250805 eV Total energy + Delta-G solvation = -2996.035484 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.88878 -40.68898 -39.31573 -34.91481 -33.59584 -32.65123 -32.58792 -29.68469 -27.54333 -26.56669 -24.19084 -22.85707 -22.11461 -21.17237 -18.95257 -18.38730 -17.65515 -16.93145 -16.71320 -16.47264 -16.19182 -15.56001 -15.20699 -14.91675 -14.49454 -14.41624 -14.34863 -14.14814 -13.63775 -13.13197 -12.87692 -12.84063 -12.66931 -12.42297 -12.32905 -12.11958 -12.00285 -11.77249 -11.42935 -11.08925 -10.77114 -10.21527 -9.81491 -9.38221 -8.18441 -6.39676 0.16126 0.29545 1.39724 1.40439 1.53652 2.38873 2.59190 2.99985 3.30990 3.45346 3.68671 3.86468 3.95990 4.03778 4.09742 4.27526 4.32957 4.47056 4.59383 4.69660 4.78688 4.85961 4.91601 4.94419 4.99497 5.08453 5.14709 5.21354 5.31011 5.42620 5.50452 5.62404 5.70182 5.99331 6.10502 6.46775 6.85284 7.35905 8.90404 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.006930 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.387723 B = 4039.192639 C = 4758.224111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.089 4.089 4 C -0.144 4.144 5 C 0.072 3.928 6 F -0.148 7.148 7 C -0.119 4.119 8 C 0.095 3.905 9 H 0.046 0.954 10 C -0.128 4.128 11 C -0.136 4.136 12 C 0.195 3.805 13 H -0.009 1.009 14 C -0.550 4.550 15 H 0.069 0.931 16 C 0.021 3.979 17 N -0.903 5.903 18 Si 0.966 3.034 19 H -0.260 1.260 20 H -0.279 1.279 21 H -0.276 1.276 22 O -0.370 6.370 23 C -0.088 4.088 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.173 0.827 28 H 0.165 0.835 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.262 0.738 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.201 14.049 6.321 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.107 4.107 4 C -0.162 4.162 5 C 0.053 3.947 6 F -0.127 7.127 7 C -0.120 4.120 8 C 0.036 3.964 9 H 0.064 0.936 10 C -0.166 4.166 11 C -0.174 4.174 12 C 0.139 3.861 13 H 0.009 0.991 14 C -0.587 4.587 15 H 0.087 0.913 16 C -0.181 4.181 17 N -0.541 5.541 18 Si 0.789 3.211 19 H -0.184 1.184 20 H -0.205 1.205 21 H -0.201 1.201 22 O -0.290 6.290 23 C -0.106 4.106 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.115 0.885 27 H 0.190 0.810 28 H 0.183 0.817 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.352 14.064 6.013 15.476 hybrid contribution 0.262 -1.170 -0.425 1.272 sum -2.090 12.894 5.588 14.208 Atomic orbital electron populations 1.20831 0.88798 1.03907 1.03160 1.20342 0.98061 0.92238 0.99235 1.21281 0.92692 0.98667 0.98018 1.21389 0.95556 0.96434 1.02818 1.17702 0.76575 0.94423 1.05971 1.91431 1.29575 1.97444 1.94240 1.19864 0.95280 0.93053 1.03757 1.21615 0.92495 0.87452 0.94830 0.93623 1.22862 1.02291 0.95937 0.95521 1.22952 1.01327 0.94836 0.98299 1.20476 0.92734 0.83761 0.89111 0.99146 1.21461 1.26895 1.16457 0.93897 0.91261 1.26015 0.98267 0.98698 0.95120 1.70204 1.43307 1.41908 0.98641 0.85411 0.78375 0.78517 0.78748 1.18356 1.20518 1.20109 1.89428 1.50141 1.15247 1.74135 1.20862 0.92562 0.98934 0.98288 0.90544 0.92056 0.88506 0.81000 0.81734 0.89600 0.90732 0.91472 0.90709 0.92899 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 10.01 71.23 0.71 -1.60 16 2 C -0.10 -2.70 5.88 -19.86 -0.12 -2.82 16 3 C -0.09 -1.95 9.70 22.26 0.22 -1.73 16 4 C -0.14 -3.52 10.03 22.31 0.22 -3.30 16 5 C 0.07 2.38 7.25 22.38 0.16 2.55 16 6 F -0.15 -5.00 16.61 44.97 0.75 -4.25 16 7 C -0.12 -4.59 5.00 -19.82 -0.10 -4.69 16 8 C 0.09 4.22 3.26 30.35 0.10 4.32 16 9 H 0.05 2.11 7.86 -2.39 -0.02 2.09 16 10 C -0.13 -4.92 6.63 31.67 0.21 -4.71 16 11 C -0.14 -5.86 6.62 31.67 0.21 -5.65 16 12 C 0.19 10.63 3.11 30.35 0.09 10.72 16 13 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 14 C -0.55 -31.72 8.78 25.60 0.22 -31.50 16 15 H 0.07 3.82 7.59 -2.91 -0.02 3.79 16 16 C 0.02 1.21 5.42 84.66 0.46 1.67 16 17 N -0.90 -55.77 12.94 21.45 0.28 -55.49 16 18 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 19 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 22 O -0.37 -20.36 9.39 -148.98 -1.40 -21.76 16 23 C -0.09 -3.26 9.03 22.26 0.20 -3.06 16 24 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.38 8.09 -2.39 -0.02 1.37 16 26 H 0.10 1.39 8.09 -2.39 -0.02 1.37 16 27 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 28 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 29 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.07 2.67 7.87 -2.39 -0.02 2.65 16 31 H 0.07 2.83 7.72 -2.39 -0.02 2.82 16 32 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 34 H 0.11 4.81 7.32 -2.91 -0.02 4.79 16 Total: -1.00 -69.30 292.02 5.34 -63.96 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 1.09 Total: 10.92 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 2.60 Total: -39.79 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.28 Total: -55.49 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -1.40 Total: -21.76 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.75 Total: -4.25 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -69.30 5.34 -63.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309202883.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.662 kcal (2) G-P(sol) polarization free energy of solvation -69.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds