Wall clock time and date at job start Mon Mar 30 2020 06:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38265 * 119.97476 * 2 1 4 4 C 1.38177 * 120.02212 * 179.72417 * 3 2 1 5 5 C 1.38487 * 119.97478 * 0.55159 * 4 3 2 6 6 F 1.35104 * 120.02441 * 179.74450 * 5 4 3 7 7 C 1.38436 * 119.94649 * 359.47260 * 5 4 3 8 8 C 1.50697 * 120.00925 * 180.23128 * 7 5 4 9 9 H 1.09003 * 110.27806 * 324.29319 * 8 7 5 10 10 C 1.54942 * 110.31311 * 86.38881 * 8 7 5 11 11 C 1.55415 * 100.89729 * 155.28636 * 10 8 7 12 12 C 1.54383 * 102.30660 * 325.99181 * 11 10 8 13 13 H 1.09004 * 109.83136 * 261.77205 * 12 11 10 14 14 C 1.50700 * 109.90602 * 140.84114 * 12 11 10 15 15 H 1.08004 * 120.00065 * 0.36709 * 14 12 11 16 16 C 1.37872 * 120.00162 * 180.36424 * 14 12 11 17 17 N 1.31518 * 119.99753 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00109 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47230 * 90.00204 * 18 16 14 20 20 H 1.48507 * 109.47267 * 210.00283 * 18 16 14 21 21 H 1.48504 * 109.47038 * 329.99808 * 18 16 14 22 22 O 1.43237 * 107.58925 * 21.28362 * 12 11 10 23 23 C 1.38216 * 119.97572 * 0.24882 * 7 5 4 24 24 H 1.09008 * 109.47061 * 269.97643 * 1 2 3 25 25 H 1.09000 * 109.47071 * 29.97526 * 1 2 3 26 26 H 1.08999 * 109.47755 * 149.97790 * 1 2 3 27 27 H 1.07993 * 119.98906 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.01627 * 180.27269 * 4 3 2 29 29 H 1.09003 * 111.12429 * 273.28172 * 10 8 7 30 30 H 1.09002 * 111.12613 * 37.43768 * 10 8 7 31 31 H 1.08997 * 110.88303 * 207.75574 * 11 10 8 32 32 H 1.08993 * 110.93502 * 84.25250 * 11 10 8 33 33 H 0.97007 * 119.99756 * 179.97438 * 17 16 14 34 34 H 1.08002 * 119.98614 * 180.02562 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1989 0.0058 5 6 4.2725 -0.0002 0.0000 6 9 5.6235 -0.0002 0.0004 7 6 3.5797 -1.1987 -0.0005 8 6 4.3323 -2.5043 -0.0015 9 1 5.2401 -2.4166 -0.5985 10 6 4.6806 -2.9254 1.4483 11 6 4.8179 -4.4646 1.2822 12 6 3.7609 -4.7744 0.2005 13 1 2.8444 -5.1312 0.6705 14 6 4.2888 -5.8193 -0.7485 15 1 5.2755 -6.2332 -0.6014 16 6 3.5123 -6.2469 -1.8045 17 7 2.3110 -5.7425 -1.9838 18 14 4.1665 -7.5425 -2.9803 19 1 3.7966 -8.8926 -2.4849 20 1 3.5778 -7.3311 -4.3273 21 1 5.6452 -7.4338 -3.0639 22 8 3.5005 -3.5588 -0.5110 23 6 2.1975 -1.1974 -0.0004 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5141 27 1 1.6572 2.1326 0.0004 28 1 4.1190 2.1345 0.0102 29 1 5.6205 -2.4783 1.7722 30 1 3.8718 -2.6757 2.1350 31 1 4.5817 -4.9785 2.2139 32 1 5.8165 -4.7314 0.9364 33 1 1.7648 -6.0431 -2.7270 34 1 1.6568 -2.1324 -0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309202887.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:48 Heat of formation + Delta-G solvation = -78.279614 kcal Electronic energy + Delta-G solvation = -18262.609278 eV Core-core repulsion = 15267.325843 eV Total energy + Delta-G solvation = -2995.283435 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.57225 -39.26170 -37.73534 -32.96008 -32.17209 -31.22925 -30.89369 -27.89551 -26.39003 -24.76974 -22.58839 -21.50304 -20.22998 -19.83935 -17.31295 -16.54545 -16.39321 -15.36818 -15.31039 -14.83613 -14.51881 -14.00269 -13.70584 -13.48967 -13.26718 -13.09300 -12.65487 -12.17246 -11.91367 -11.84573 -11.71899 -11.39086 -11.03541 -10.89475 -10.59482 -10.42466 -10.39424 -10.15485 -9.85755 -9.22394 -8.62214 -8.51928 -8.19723 -7.84482 -5.98490 -4.11890 1.40136 1.52795 3.31173 3.38238 3.41518 3.82273 4.43803 4.54483 4.81219 4.93816 5.06762 5.20622 5.37642 5.46248 5.51627 5.57745 5.72383 5.73689 5.79683 5.98383 6.15483 6.18448 6.26763 6.33960 6.39471 6.50527 6.57833 6.66174 6.78893 6.81191 6.91878 7.20853 7.62789 7.89160 8.28112 8.56442 9.02978 9.59745 11.08232 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.025066 B = 0.006587 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.770394 B = 4249.731135 C = 4761.942429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.105 4.105 4 C -0.157 4.157 5 C 0.090 3.910 6 F -0.142 7.142 7 C -0.099 4.099 8 C 0.114 3.886 9 H 0.066 0.934 10 C -0.145 4.145 11 C -0.144 4.144 12 C 0.206 3.794 13 H 0.040 0.960 14 C -0.545 4.545 15 H 0.059 0.941 16 C 0.079 3.921 17 N -0.863 5.863 18 Si 0.889 3.111 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 O -0.349 6.349 23 C -0.063 4.063 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.260 0.740 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.999 12.079 5.457 13.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C -0.123 4.123 4 C -0.176 4.176 5 C 0.070 3.930 6 F -0.121 7.121 7 C -0.100 4.100 8 C 0.055 3.945 9 H 0.084 0.916 10 C -0.183 4.183 11 C -0.182 4.182 12 C 0.151 3.849 13 H 0.058 0.942 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.127 4.127 17 N -0.499 5.499 18 Si 0.717 3.283 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 O -0.268 6.268 23 C -0.081 4.081 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.266 12.083 5.181 13.208 hybrid contribution 0.825 -0.646 -0.610 1.212 sum -0.441 11.437 4.571 12.325 Atomic orbital electron populations 1.20756 0.90966 1.02902 1.02157 1.20004 0.96438 0.92947 1.00897 1.20769 0.92961 0.97718 1.00837 1.20957 0.94965 0.96478 1.05233 1.17519 0.76685 0.94030 1.04734 1.91455 1.29174 1.97405 1.94050 1.20226 0.94945 0.93989 1.00837 1.21437 0.92969 0.86312 0.93762 0.91634 1.23229 1.00998 0.97502 0.96557 1.23228 1.01745 0.93183 1.00001 1.20320 0.92867 0.83029 0.88725 0.94238 1.21389 1.02256 1.21557 1.13040 0.92254 1.25047 0.94627 0.95664 0.97315 1.70027 1.09021 1.41195 1.29683 0.86664 0.79329 0.81814 0.80527 1.20564 1.21120 1.19825 1.88780 1.60371 1.17692 1.59998 1.21003 0.92761 0.98522 0.95775 0.91344 0.91833 0.91019 0.85676 0.85285 0.91526 0.91449 0.92065 0.91449 0.93010 0.83754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 36.00 0.36 -0.92 16 2 C -0.10 -1.49 5.88 -104.62 -0.62 -2.11 16 3 C -0.10 -1.37 9.70 -39.59 -0.38 -1.75 16 4 C -0.16 -2.21 10.03 -39.51 -0.40 -2.60 16 5 C 0.09 1.52 7.25 -39.42 -0.29 1.23 16 6 F -0.14 -2.45 16.61 2.25 0.04 -2.42 16 7 C -0.10 -1.87 5.10 -104.56 -0.53 -2.40 16 8 C 0.11 2.43 3.41 -26.86 -0.09 2.34 16 9 H 0.07 1.45 7.86 -51.93 -0.41 1.04 16 10 C -0.15 -2.72 6.57 -24.42 -0.16 -2.88 16 11 C -0.14 -2.99 6.53 -24.72 -0.16 -3.15 16 12 C 0.21 5.28 3.36 -27.16 -0.09 5.19 16 13 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 14 C -0.54 -15.32 8.75 -34.44 -0.30 -15.62 16 15 H 0.06 1.63 7.52 -52.48 -0.39 1.23 16 16 C 0.08 2.25 5.41 -17.82 -0.10 2.16 16 17 N -0.86 -25.54 12.91 55.43 0.72 -24.83 16 18 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 O -0.35 -9.01 9.01 -35.23 -0.32 -9.32 16 23 C -0.06 -1.12 9.03 -39.59 -0.36 -1.48 16 24 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 26 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 27 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 28 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.19 8.05 -51.93 -0.42 0.78 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.40 7.66 -51.93 -0.40 1.00 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.14 2.83 7.32 -52.49 -0.38 2.44 16 LS Contribution 292.00 15.07 4.40 4.40 Total: -1.00 -30.38 292.00 -7.81 -38.19 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.51 Total: -0.54 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -3.11 Total: -22.00 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.72 Total: -24.83 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.32 Total: -9.32 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.38 -7.81 -38.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309202887.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.086 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds