Wall clock time and date at job start Mon Mar 30 2020 06:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38265 * 119.97476 * 2 1 4 4 C 1.38177 * 120.02212 * 179.72417 * 3 2 1 5 5 C 1.38487 * 119.97478 * 0.55159 * 4 3 2 6 6 F 1.35104 * 120.02441 * 179.74450 * 5 4 3 7 7 C 1.38436 * 119.94649 * 359.47260 * 5 4 3 8 8 C 1.50697 * 120.00925 * 180.23128 * 7 5 4 9 9 H 1.09003 * 110.27806 * 324.29319 * 8 7 5 10 10 C 1.54942 * 110.31311 * 86.38881 * 8 7 5 11 11 C 1.55415 * 100.89729 * 155.28636 * 10 8 7 12 12 C 1.54383 * 102.30660 * 325.99181 * 11 10 8 13 13 H 1.09004 * 109.83136 * 261.77205 * 12 11 10 14 14 C 1.50700 * 109.90602 * 140.84114 * 12 11 10 15 15 H 1.08004 * 120.00065 * 0.36709 * 14 12 11 16 16 C 1.37872 * 120.00162 * 180.36424 * 14 12 11 17 17 N 1.31518 * 119.99753 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00109 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47230 * 90.00204 * 18 16 14 20 20 H 1.48507 * 109.47267 * 210.00283 * 18 16 14 21 21 H 1.48504 * 109.47038 * 329.99808 * 18 16 14 22 22 O 1.43237 * 107.58925 * 21.28362 * 12 11 10 23 23 C 1.38216 * 119.97572 * 0.24882 * 7 5 4 24 24 H 1.09008 * 109.47061 * 269.97643 * 1 2 3 25 25 H 1.09000 * 109.47071 * 29.97526 * 1 2 3 26 26 H 1.08999 * 109.47755 * 149.97790 * 1 2 3 27 27 H 1.07993 * 119.98906 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.01627 * 180.27269 * 4 3 2 29 29 H 1.09003 * 111.12429 * 273.28172 * 10 8 7 30 30 H 1.09002 * 111.12613 * 37.43768 * 10 8 7 31 31 H 1.08997 * 110.88303 * 207.75574 * 11 10 8 32 32 H 1.08993 * 110.93502 * 84.25250 * 11 10 8 33 33 H 0.97007 * 119.99756 * 179.97438 * 17 16 14 34 34 H 1.08002 * 119.98614 * 180.02562 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1989 0.0058 5 6 4.2725 -0.0002 0.0000 6 9 5.6235 -0.0002 0.0004 7 6 3.5797 -1.1987 -0.0005 8 6 4.3323 -2.5043 -0.0015 9 1 5.2401 -2.4166 -0.5985 10 6 4.6806 -2.9254 1.4483 11 6 4.8179 -4.4646 1.2822 12 6 3.7609 -4.7744 0.2005 13 1 2.8444 -5.1312 0.6705 14 6 4.2888 -5.8193 -0.7485 15 1 5.2755 -6.2332 -0.6014 16 6 3.5123 -6.2469 -1.8045 17 7 2.3110 -5.7425 -1.9838 18 14 4.1665 -7.5425 -2.9803 19 1 3.7966 -8.8926 -2.4849 20 1 3.5778 -7.3311 -4.3273 21 1 5.6452 -7.4338 -3.0639 22 8 3.5005 -3.5588 -0.5110 23 6 2.1975 -1.1974 -0.0004 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5141 27 1 1.6572 2.1326 0.0004 28 1 4.1190 2.1345 0.0102 29 1 5.6205 -2.4783 1.7722 30 1 3.8718 -2.6757 2.1350 31 1 4.5817 -4.9785 2.2139 32 1 5.8165 -4.7314 0.9364 33 1 1.7648 -6.0431 -2.7270 34 1 1.6568 -2.1324 -0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309202887.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:47 Heat of formation + Delta-G solvation = -95.184092 kcal Electronic energy + Delta-G solvation = -18263.342312 eV Core-core repulsion = 15267.325843 eV Total energy + Delta-G solvation = -2996.016468 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.87029 -40.69167 -39.31919 -34.88099 -33.57608 -32.66739 -32.58467 -29.65988 -27.52916 -26.58836 -24.09291 -22.84636 -22.04884 -21.31602 -18.69984 -18.52581 -17.81990 -16.92518 -16.68483 -16.56053 -16.18312 -15.54587 -14.95026 -14.91411 -14.54317 -14.36848 -14.34814 -13.88341 -13.69582 -13.16674 -12.87568 -12.80337 -12.61500 -12.44088 -12.37972 -12.26397 -12.05127 -11.72148 -11.57110 -11.15003 -10.69591 -10.05662 -9.73046 -9.35705 -8.14548 -6.36126 0.17587 0.30723 1.38047 1.39738 1.50100 2.39339 2.59826 3.01903 3.32421 3.45186 3.67813 3.82483 3.93620 3.99049 4.15074 4.29832 4.35170 4.50191 4.60029 4.69443 4.78127 4.86725 4.88046 4.96634 5.02168 5.09035 5.14739 5.22215 5.31811 5.44460 5.60770 5.64088 5.73155 6.00644 6.16394 6.55351 6.98340 7.40457 8.92349 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.025066 B = 0.006587 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.770394 B = 4249.731135 C = 4761.942429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.090 4.090 4 C -0.144 4.144 5 C 0.072 3.928 6 F -0.148 7.148 7 C -0.124 4.124 8 C 0.106 3.894 9 H 0.048 0.952 10 C -0.129 4.129 11 C -0.136 4.136 12 C 0.198 3.802 13 H 0.008 0.992 14 C -0.567 4.567 15 H 0.061 0.939 16 C 0.024 3.976 17 N -0.900 5.900 18 Si 0.959 3.041 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.268 1.268 22 O -0.379 6.379 23 C -0.088 4.088 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.172 0.828 28 H 0.164 0.836 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.261 0.739 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.835 14.257 5.844 15.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.108 4.108 4 C -0.162 4.162 5 C 0.053 3.947 6 F -0.127 7.127 7 C -0.125 4.125 8 C 0.048 3.952 9 H 0.065 0.935 10 C -0.167 4.167 11 C -0.173 4.173 12 C 0.142 3.858 13 H 0.026 0.974 14 C -0.604 4.604 15 H 0.079 0.921 16 C -0.178 4.178 17 N -0.537 5.537 18 Si 0.783 3.217 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.192 1.192 22 O -0.298 6.298 23 C -0.107 4.107 24 H 0.103 0.897 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.189 0.811 28 H 0.182 0.818 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.091 14.260 5.583 15.353 hybrid contribution 0.728 -1.229 -0.714 1.597 sum -0.363 13.032 4.868 13.916 Atomic orbital electron populations 1.20828 0.88831 1.03588 1.03432 1.20339 0.98040 0.92266 0.99241 1.21270 0.92697 0.98651 0.98146 1.21386 0.95552 0.96453 1.02855 1.17702 0.76575 0.94430 1.05979 1.91434 1.29577 1.97447 1.94242 1.20061 0.95365 0.93495 1.03547 1.21537 0.92204 0.86707 0.94770 0.93469 1.23155 1.02533 0.95755 0.95247 1.23112 0.99955 0.95039 0.99228 1.20228 0.92829 0.83081 0.89646 0.97398 1.21811 1.02370 1.22470 1.13757 0.92115 1.25932 0.94841 0.97915 0.99153 1.70173 1.10324 1.42800 1.30413 0.85570 0.78767 0.79317 0.78012 1.19244 1.20907 1.19201 1.88699 1.61525 1.18727 1.60899 1.20849 0.92573 0.98864 0.98374 0.89681 0.88901 0.92581 0.81083 0.81817 0.88974 0.90486 0.89972 0.91509 0.93012 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 10.01 71.23 0.71 -1.59 16 2 C -0.10 -2.70 5.88 -19.86 -0.12 -2.81 16 3 C -0.09 -1.97 9.70 22.26 0.22 -1.76 16 4 C -0.14 -3.53 10.03 22.31 0.22 -3.31 16 5 C 0.07 2.37 7.25 22.38 0.16 2.53 16 6 F -0.15 -4.99 16.61 44.97 0.75 -4.25 16 7 C -0.12 -4.76 5.10 -19.82 -0.10 -4.86 16 8 C 0.11 4.70 3.41 30.51 0.10 4.80 16 9 H 0.05 2.20 7.86 -2.39 -0.02 2.18 16 10 C -0.13 -4.86 6.57 32.09 0.21 -4.65 16 11 C -0.14 -5.72 6.53 31.89 0.21 -5.52 16 12 C 0.20 10.66 3.36 30.32 0.10 10.76 16 13 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 14 C -0.57 -32.95 8.75 25.60 0.22 -32.73 16 15 H 0.06 3.40 7.52 -2.91 -0.02 3.38 16 16 C 0.02 1.38 5.41 84.65 0.46 1.84 16 17 N -0.90 -55.44 12.91 21.45 0.28 -55.17 16 18 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 O -0.38 -20.70 9.01 -148.98 -1.34 -22.04 16 23 C -0.09 -3.25 9.03 22.26 0.20 -3.05 16 24 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.09 1.41 8.08 -2.39 -0.02 1.39 16 26 H 0.06 1.35 8.08 -2.39 -0.02 1.33 16 27 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 28 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 29 H 0.09 2.97 8.14 -2.39 -0.02 2.96 16 30 H 0.08 2.73 8.05 -2.39 -0.02 2.71 16 31 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.07 2.79 7.66 -2.39 -0.02 2.78 16 33 H 0.26 15.16 8.31 -92.70 -0.77 14.38 16 34 H 0.11 4.75 7.32 -2.91 -0.02 4.73 16 Total: -1.00 -69.29 292.00 5.40 -63.89 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 1.09 Total: 10.74 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 2.61 Total: -40.33 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.28 Total: -55.17 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -1.34 Total: -22.04 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.75 Total: -4.25 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -69.29 5.40 -63.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309202887.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.289 kcal (2) G-P(sol) polarization free energy of solvation -69.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds