Wall clock time and date at job start Mon Mar 30 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38227 * 120.01027 * 2 1 4 4 C 1.38220 * 120.02607 * 180.02562 * 3 2 1 5 5 C 1.38269 * 120.05274 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.98786 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.82299 * 339.43383 * 6 5 4 8 8 C 1.54381 * 109.90469 * 100.36935 * 6 5 4 9 9 C 1.55414 * 102.31475 * 140.84121 * 8 6 5 10 10 C 1.54955 * 100.88826 * 325.99259 * 9 8 6 11 11 H 1.09002 * 110.30714 * 277.35765 * 10 9 8 12 12 C 1.50701 * 110.30968 * 155.28966 * 10 9 8 13 13 H 1.08002 * 119.99761 * 1.38013 * 12 10 9 14 14 C 1.37871 * 119.99694 * 181.66576 * 12 10 9 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 10 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 10 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 O 1.43235 * 109.82852 * 218.54581 * 6 5 4 21 21 C 1.38180 * 120.02446 * 0.27266 * 5 4 3 22 22 C 1.38441 * 120.01571 * 180.02562 * 2 1 3 23 23 F 1.35089 * 120.02543 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47257 * 90.00518 * 1 2 3 25 25 H 1.09000 * 109.46807 * 209.99774 * 1 2 3 26 26 H 1.08996 * 109.47689 * 329.99779 * 1 2 3 27 27 H 1.07999 * 119.98422 * 0.02562 * 3 2 1 28 28 H 1.07996 * 119.97377 * 180.02562 * 4 3 2 29 29 H 1.09002 * 110.84692 * 259.10348 * 8 6 5 30 30 H 1.09003 * 110.84937 * 22.51753 * 8 6 5 31 31 H 1.08994 * 111.21570 * 208.06472 * 9 8 6 32 32 H 1.08999 * 111.08618 * 83.85814 * 9 8 6 33 33 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 34 34 H 1.07993 * 120.01271 * 179.72594 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2733 0.0007 -0.0016 6 6 5.7803 0.0028 -0.0028 7 1 6.1483 0.9636 -0.3628 8 6 6.3073 -0.2583 1.4246 9 6 7.5283 -1.1836 1.1629 10 6 7.0295 -1.9862 -0.0651 11 1 6.3978 -2.8146 0.2555 12 6 8.1992 -2.5004 -0.8642 13 1 9.2080 -2.3052 -0.5315 14 6 7.9815 -3.2149 -2.0230 15 7 6.7531 -3.4527 -2.4281 16 14 9.4315 -3.8456 -3.0177 17 1 10.6983 -3.4473 -2.3532 18 1 9.3635 -5.3264 -3.1075 19 1 9.3853 -3.2643 -4.3833 20 8 6.2670 -1.0499 -0.8433 21 6 3.5843 -1.1971 -0.0078 22 6 2.1995 -1.1987 -0.0005 23 9 1.5249 -2.3691 -0.0005 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6582 2.1322 0.0004 28 1 4.1198 2.1330 -0.0001 29 1 6.6195 0.6720 1.8991 30 1 5.5558 -0.7667 2.0287 31 1 7.7145 -1.8407 2.0124 32 1 8.4162 -0.6011 0.9171 33 1 6.6000 -3.9551 -3.2436 34 1 4.1256 -2.1315 -0.0131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309303849.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:53 Heat of formation + Delta-G solvation = -79.256215 kcal Electronic energy + Delta-G solvation = -18151.832016 eV Core-core repulsion = 15156.506232 eV Total energy + Delta-G solvation = -2995.325784 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.53754 -39.36440 -37.63256 -33.22786 -32.26209 -30.95315 -30.21190 -28.96975 -26.45116 -24.16361 -22.54234 -21.61538 -20.38405 -20.08965 -17.00003 -16.51450 -16.22248 -15.46236 -15.34384 -14.97947 -14.72815 -14.14528 -13.68338 -13.30472 -13.28915 -12.95249 -12.52183 -12.41550 -12.06741 -11.78887 -11.74811 -11.36570 -11.04075 -10.93550 -10.61203 -10.43223 -10.40684 -10.22213 -9.82383 -9.14399 -8.61728 -8.51396 -8.25125 -7.91797 -6.01959 -4.15293 1.44377 1.56193 3.29888 3.37974 3.41169 3.85347 4.41744 4.55743 4.87738 4.95459 5.06646 5.22724 5.27858 5.45105 5.52460 5.59103 5.61970 5.66102 5.81596 5.92139 6.07415 6.15221 6.24678 6.33228 6.41573 6.49648 6.55426 6.60179 6.68347 6.77496 7.02339 7.25559 7.54074 7.87682 8.22970 8.57759 8.99838 9.56028 11.05415 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.028326 B = 0.006146 C = 0.005487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.250681 B = 4554.916798 C = 5101.307165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.135 4.135 3 C -0.100 4.100 4 C -0.126 4.126 5 C -0.056 4.056 6 C 0.108 3.892 7 H 0.072 0.928 8 C -0.146 4.146 9 C -0.147 4.147 10 C 0.208 3.792 11 H 0.028 0.972 12 C -0.535 4.535 13 H 0.064 0.936 14 C 0.078 3.922 15 N -0.861 5.861 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 O -0.347 6.347 21 C -0.117 4.117 22 C 0.091 3.909 23 F -0.142 7.142 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.261 0.739 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.653 8.378 6.411 13.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.136 4.136 3 C -0.119 4.119 4 C -0.144 4.144 5 C -0.057 4.057 6 C 0.048 3.952 7 H 0.089 0.911 8 C -0.184 4.184 9 C -0.185 4.185 10 C 0.153 3.847 11 H 0.045 0.955 12 C -0.573 4.573 13 H 0.082 0.918 14 C -0.128 4.128 15 N -0.497 5.497 16 Si 0.719 3.281 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.208 1.208 20 O -0.266 6.266 21 C -0.136 4.136 22 C 0.072 3.928 23 F -0.121 7.121 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.143 0.857 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.831 8.215 6.059 13.498 hybrid contribution 0.598 -0.524 -0.467 0.922 sum -8.233 7.692 5.591 12.578 Atomic orbital electron populations 1.20654 0.90741 1.02725 1.02400 1.19822 0.96539 0.92134 1.05066 1.20746 0.93942 0.96556 1.00611 1.21003 0.93894 0.97763 1.01789 1.20378 0.97202 0.92044 0.96042 1.21478 0.87560 0.94621 0.91498 0.91064 1.23140 0.98710 1.00156 0.96366 1.23364 0.96847 0.98088 1.00170 1.20584 0.90202 0.87108 0.86797 0.95459 1.21138 0.91926 1.34450 1.09750 0.91804 1.25080 0.95575 0.94925 0.97234 1.70032 1.19357 1.37822 1.22513 0.86565 0.82861 0.78469 0.80222 1.19630 1.20896 1.20848 1.88927 1.70089 1.34935 1.32650 1.21146 0.91551 1.00692 1.00189 1.17576 0.90117 0.80720 1.04373 1.91447 1.80320 1.46291 1.94033 0.91227 0.91544 0.91422 0.85620 0.85730 0.91513 0.91539 0.91770 0.91414 0.92918 0.83891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 9.84 36.00 0.35 -0.88 16 2 C -0.13 -1.98 5.89 -104.55 -0.62 -2.60 16 3 C -0.10 -1.35 9.70 -39.59 -0.38 -1.74 16 4 C -0.13 -1.88 9.67 -39.58 -0.38 -2.26 16 5 C -0.06 -1.02 4.85 -104.63 -0.51 -1.53 16 6 C 0.11 2.12 3.73 -27.16 -0.10 2.02 16 7 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 8 C -0.15 -2.54 6.54 -24.73 -0.16 -2.71 16 9 C -0.15 -2.97 6.54 -24.42 -0.16 -3.13 16 10 C 0.21 5.28 3.24 -26.85 -0.09 5.20 16 11 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 12 C -0.54 -14.92 8.80 -34.44 -0.30 -15.23 16 13 H 0.06 1.73 7.76 -52.49 -0.41 1.32 16 14 C 0.08 2.21 5.42 -17.82 -0.10 2.11 16 15 N -0.86 -25.63 12.98 55.43 0.72 -24.91 16 16 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 O -0.35 -8.86 9.57 -35.23 -0.34 -9.20 16 21 C -0.12 -2.29 9.32 -39.51 -0.37 -2.65 16 22 C 0.09 1.61 7.24 -39.42 -0.29 1.33 16 23 F -0.14 -2.56 16.48 2.25 0.04 -2.52 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.76 7.64 -51.93 -0.40 0.36 16 26 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.12 1.54 8.05 -52.49 -0.42 1.12 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.12 7.83 -51.93 -0.41 0.71 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.35 8.04 -51.93 -0.42 0.94 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 34 H 0.14 3.15 7.69 -52.49 -0.40 2.75 16 LS Contribution 292.69 15.07 4.41 4.41 Total: -1.00 -30.60 292.69 -7.83 -38.43 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -4.54 Total: -0.50 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -3.10 Total: -22.07 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.72 Total: -24.91 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.34 Total: -9.20 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.60 -7.83 -38.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309303849.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.829 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds