Wall clock time and date at job start Mon Mar 30 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38227 * 120.01027 * 2 1 4 4 C 1.38220 * 120.02607 * 180.02562 * 3 2 1 5 5 C 1.38269 * 120.05274 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.98786 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.82299 * 339.43383 * 6 5 4 8 8 C 1.54381 * 109.90469 * 100.36935 * 6 5 4 9 9 C 1.55414 * 102.31475 * 140.84121 * 8 6 5 10 10 C 1.54955 * 100.88826 * 325.99259 * 9 8 6 11 11 H 1.09002 * 110.30714 * 277.35765 * 10 9 8 12 12 C 1.50701 * 110.30968 * 155.28966 * 10 9 8 13 13 H 1.08002 * 119.99761 * 1.38013 * 12 10 9 14 14 C 1.37871 * 119.99694 * 181.66576 * 12 10 9 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 10 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 10 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 O 1.43235 * 109.82852 * 218.54581 * 6 5 4 21 21 C 1.38180 * 120.02446 * 0.27266 * 5 4 3 22 22 C 1.38441 * 120.01571 * 180.02562 * 2 1 3 23 23 F 1.35089 * 120.02543 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47257 * 90.00518 * 1 2 3 25 25 H 1.09000 * 109.46807 * 209.99774 * 1 2 3 26 26 H 1.08996 * 109.47689 * 329.99779 * 1 2 3 27 27 H 1.07999 * 119.98422 * 0.02562 * 3 2 1 28 28 H 1.07996 * 119.97377 * 180.02562 * 4 3 2 29 29 H 1.09002 * 110.84692 * 259.10348 * 8 6 5 30 30 H 1.09003 * 110.84937 * 22.51753 * 8 6 5 31 31 H 1.08994 * 111.21570 * 208.06472 * 9 8 6 32 32 H 1.08999 * 111.08618 * 83.85814 * 9 8 6 33 33 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 34 34 H 1.07993 * 120.01271 * 179.72594 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2733 0.0007 -0.0016 6 6 5.7803 0.0028 -0.0028 7 1 6.1483 0.9636 -0.3628 8 6 6.3073 -0.2583 1.4246 9 6 7.5283 -1.1836 1.1629 10 6 7.0295 -1.9862 -0.0651 11 1 6.3978 -2.8146 0.2555 12 6 8.1992 -2.5004 -0.8642 13 1 9.2080 -2.3052 -0.5315 14 6 7.9815 -3.2149 -2.0230 15 7 6.7531 -3.4527 -2.4281 16 14 9.4315 -3.8456 -3.0177 17 1 10.6983 -3.4473 -2.3532 18 1 9.3635 -5.3264 -3.1075 19 1 9.3853 -3.2643 -4.3833 20 8 6.2670 -1.0499 -0.8433 21 6 3.5843 -1.1971 -0.0078 22 6 2.1995 -1.1987 -0.0005 23 9 1.5249 -2.3691 -0.0005 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6582 2.1322 0.0004 28 1 4.1198 2.1330 -0.0001 29 1 6.6195 0.6720 1.8991 30 1 5.5558 -0.7667 2.0287 31 1 7.7145 -1.8407 2.0124 32 1 8.4162 -0.6011 0.9171 33 1 6.6000 -3.9551 -3.2436 34 1 4.1256 -2.1315 -0.0131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309303849.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:53 Heat of formation + Delta-G solvation = -96.847743 kcal Electronic energy + Delta-G solvation = -18152.594842 eV Core-core repulsion = 15156.506232 eV Total energy + Delta-G solvation = -2996.088610 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.92041 -40.80002 -39.15929 -34.96236 -33.90469 -32.63815 -31.49265 -30.54835 -27.98755 -25.85805 -23.85756 -23.02250 -22.15337 -21.52609 -18.75390 -18.20359 -17.64720 -16.86002 -16.69886 -16.64080 -16.52807 -15.77680 -15.17929 -14.63589 -14.48905 -14.30704 -14.09945 -13.85306 -13.58926 -13.27853 -13.11908 -12.82528 -12.56660 -12.38455 -12.34482 -12.22761 -12.07690 -11.74871 -11.49583 -11.03580 -10.74289 -9.99836 -9.76573 -9.40046 -8.16507 -6.38107 0.18517 0.28734 1.39019 1.40038 1.52879 2.39355 2.57968 3.06749 3.27529 3.65383 3.73607 3.80893 3.93949 3.95595 4.20996 4.22667 4.40666 4.55177 4.66277 4.70052 4.77259 4.79495 4.86823 4.93836 5.08896 5.10936 5.12345 5.23202 5.33462 5.40806 5.50034 5.69361 5.74389 6.00184 6.15969 6.58412 7.02114 7.38849 8.91347 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.028326 B = 0.006146 C = 0.005487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.250681 B = 4554.916798 C = 5101.307165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.127 4.127 3 C -0.086 4.086 4 C -0.116 4.116 5 C -0.076 4.076 6 C 0.096 3.904 7 H 0.090 0.910 8 C -0.131 4.131 9 C -0.139 4.139 10 C 0.202 3.798 11 H -0.015 1.015 12 C -0.555 4.555 13 H 0.069 0.931 14 C 0.020 3.980 15 N -0.904 5.904 16 Si 0.964 3.036 17 H -0.258 1.258 18 H -0.278 1.278 19 H -0.281 1.281 20 O -0.385 6.385 21 C -0.147 4.147 22 C 0.065 3.935 23 F -0.153 7.153 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.175 0.825 28 H 0.160 0.840 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.260 0.740 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.095 11.444 7.018 16.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.128 4.128 3 C -0.103 4.103 4 C -0.134 4.134 5 C -0.076 4.076 6 C 0.038 3.962 7 H 0.108 0.892 8 C -0.168 4.168 9 C -0.177 4.177 10 C 0.146 3.854 11 H 0.003 0.997 12 C -0.593 4.593 13 H 0.087 0.913 14 C -0.182 4.182 15 N -0.541 5.541 16 Si 0.788 3.212 17 H -0.182 1.182 18 H -0.203 1.203 19 H -0.207 1.207 20 O -0.305 6.305 21 C -0.167 4.167 22 C 0.047 3.953 23 F -0.132 7.132 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.120 0.880 27 H 0.192 0.808 28 H 0.177 0.823 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.267 11.289 6.685 16.062 hybrid contribution 0.646 -1.418 -0.622 1.678 sum -8.620 9.870 6.062 14.439 Atomic orbital electron populations 1.20766 0.88032 1.04190 1.03463 1.20294 0.98513 0.91143 1.02842 1.21298 0.93472 0.97766 0.97814 1.21376 0.94814 0.97427 0.99758 1.20326 0.96397 0.92885 0.98019 1.21806 0.88851 0.93491 0.92095 0.89185 1.23086 0.97095 1.01249 0.95380 1.23240 0.98091 0.98223 0.98134 1.20415 0.89053 0.87198 0.88684 0.99723 1.21608 0.92919 1.34607 1.10122 0.91324 1.26012 0.98353 0.95226 0.98579 1.70206 1.21794 1.39096 1.23048 0.85441 0.79588 0.77881 0.78290 1.18200 1.20319 1.20702 1.88806 1.70685 1.36272 1.34712 1.20915 0.92668 0.99690 1.03383 1.17843 0.89631 0.81752 1.06124 1.91406 1.80293 1.47214 1.94314 0.90209 0.92077 0.88033 0.80754 0.82259 0.87370 0.91576 0.90515 0.90841 0.93116 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.10 9.84 71.23 0.70 -1.40 16 2 C -0.13 -3.45 5.89 -19.82 -0.12 -3.57 16 3 C -0.09 -1.94 9.70 22.26 0.22 -1.72 16 4 C -0.12 -3.07 9.67 22.27 0.22 -2.85 16 5 C -0.08 -2.75 4.85 -19.87 -0.10 -2.85 16 6 C 0.10 3.77 3.73 30.32 0.11 3.88 16 7 H 0.09 3.13 8.03 -2.39 -0.02 3.12 16 8 C -0.13 -4.41 6.54 31.89 0.21 -4.20 16 9 C -0.14 -5.63 6.54 32.09 0.21 -5.42 16 10 C 0.20 10.80 3.24 30.52 0.10 10.90 16 11 H -0.01 -0.89 8.10 -2.39 -0.02 -0.91 16 12 C -0.56 -32.03 8.80 25.60 0.23 -31.81 16 13 H 0.07 3.77 7.76 -2.91 -0.02 3.74 16 14 C 0.02 1.17 5.42 84.65 0.46 1.63 16 15 N -0.90 -56.72 12.98 21.45 0.28 -56.44 16 16 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 17 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 O -0.38 -20.60 9.57 -148.98 -1.43 -22.03 16 21 C -0.15 -6.13 9.32 22.32 0.21 -5.92 16 22 C 0.07 2.38 7.24 22.38 0.16 2.54 16 23 F -0.15 -5.83 16.48 44.97 0.74 -5.09 16 24 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.27 7.64 -2.39 -0.02 1.25 16 26 H 0.10 1.32 8.09 -2.39 -0.02 1.30 16 27 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 28 H 0.16 3.10 8.05 -2.91 -0.02 3.07 16 29 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.07 2.22 7.83 -2.39 -0.02 2.20 16 31 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.07 2.87 8.04 -2.39 -0.02 2.85 16 33 H 0.26 15.42 8.31 -92.71 -0.77 14.64 16 34 H 0.10 4.78 7.69 -2.91 -0.02 4.76 16 Total: -1.00 -72.12 292.69 5.31 -66.81 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 1.09 Total: 10.50 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: 2.60 Total: -40.79 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.28 Total: -56.44 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -1.43 Total: -22.03 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.74 Total: -5.09 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -72.12 5.31 -66.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309303849.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.035 kcal (2) G-P(sol) polarization free energy of solvation -72.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds