Wall clock time and date at job start Mon Mar 30 2020 06:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00251 * 2 1 4 4 H 1.48498 * 109.46823 * 270.00068 * 3 2 1 5 5 H 1.48496 * 109.46870 * 29.99921 * 3 2 1 6 6 H 1.48496 * 109.46760 * 150.00266 * 3 2 1 7 7 C 1.37878 * 119.99502 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00348 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99693 * 179.97438 * 7 2 1 10 10 H 1.09004 * 109.49162 * 299.96857 * 9 7 2 11 11 C 1.53100 * 109.48046 * 179.97438 * 9 7 2 12 12 C 1.53178 * 109.16395 * 297.62901 * 11 9 7 13 13 C 1.53181 * 109.03300 * 303.01709 * 12 11 9 14 14 C 1.53096 * 109.16280 * 56.98248 * 13 12 11 15 15 H 1.08997 * 109.47878 * 62.37549 * 14 13 12 16 16 C 1.50704 * 109.47784 * 182.39395 * 14 13 12 17 17 C 1.38222 * 120.00942 * 94.72714 * 16 14 13 18 18 C 1.38220 * 120.01957 * 179.71910 * 17 16 14 19 19 C 1.38262 * 120.05597 * 0.55566 * 18 17 16 20 20 C 1.38175 * 120.02323 * 359.71841 * 19 18 17 21 21 C 1.38441 * 120.01391 * 274.99911 * 16 14 13 22 22 F 1.35097 * 120.02298 * 359.97438 * 21 16 14 23 23 O 1.42894 * 109.41507 * 302.38730 * 14 13 12 24 24 H 0.97008 * 119.99621 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.51667 * 57.53422 * 11 9 7 26 26 H 1.08997 * 109.52347 * 177.65785 * 11 9 7 27 27 H 1.09000 * 109.54365 * 183.15369 * 12 11 9 28 28 H 1.09003 * 109.54455 * 62.87879 * 12 11 9 29 29 H 1.08998 * 109.52547 * 297.07448 * 13 12 11 30 30 H 1.09004 * 109.52249 * 176.88328 * 13 12 11 31 31 H 1.07998 * 119.98800 * 359.97438 * 17 16 14 32 32 H 1.08008 * 119.97137 * 180.25045 * 18 17 16 33 33 H 1.08005 * 119.99148 * 179.74201 * 19 18 17 34 34 H 1.07998 * 120.01490 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8748 -0.6815 -0.8907 11 6 4.0220 -2.6375 0.0014 12 6 3.5576 -3.3339 1.2842 13 6 4.0588 -2.5388 2.4938 14 6 3.5469 -1.0993 2.3961 15 1 2.4574 -1.0980 2.4279 16 6 4.0843 -0.2953 3.5519 17 6 5.2390 0.4490 3.3987 18 6 5.7289 1.1910 4.4569 19 6 5.0712 1.1807 5.6731 20 6 3.9200 0.4330 5.8302 21 6 3.4249 -0.3064 4.7691 22 9 2.2991 -1.0374 4.9214 23 8 3.9885 -0.5205 1.1665 24 1 -0.4850 0.8401 -0.0004 25 1 3.6232 -3.1657 -0.8647 26 1 5.1111 -2.6387 -0.0410 27 1 3.9644 -4.3446 1.3183 28 1 2.4685 -3.3769 1.3021 29 1 5.1488 -2.5380 2.5029 30 1 3.6863 -2.9964 3.4103 31 1 5.7562 0.4539 2.4506 32 1 6.6289 1.7755 4.3351 33 1 5.4573 1.7577 6.5005 34 1 3.4062 0.4254 6.7801 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309453906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:14 Heat of formation + Delta-G solvation = -73.008801 kcal Electronic energy + Delta-G solvation = -18966.912578 eV Core-core repulsion = 15971.857702 eV Total energy + Delta-G solvation = -2995.054875 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.52791 -39.24543 -37.88904 -32.89603 -32.68793 -31.80972 -30.28522 -28.96820 -25.90989 -23.89511 -22.48042 -22.12180 -20.93040 -18.87218 -17.35626 -16.86395 -15.99457 -15.84067 -15.27175 -14.93566 -14.39488 -14.09759 -13.93862 -13.66568 -13.40998 -12.81189 -12.60392 -12.40483 -12.13603 -11.90633 -11.83609 -11.46573 -10.86463 -10.73386 -10.42490 -10.33108 -10.01192 -9.84648 -9.72647 -8.85262 -8.68363 -8.61791 -8.42455 -7.87677 -6.10785 -4.19373 1.40207 1.47375 3.38054 3.47763 3.70771 3.83786 4.49527 4.53843 4.70557 4.98113 5.16269 5.21451 5.35023 5.50318 5.61583 5.67448 5.72989 5.87818 6.05796 6.14359 6.22207 6.29039 6.36203 6.40140 6.52327 6.61671 6.63649 6.78366 6.83174 6.88443 7.05174 7.16284 7.30283 7.64020 8.20375 8.63766 8.92137 9.53685 10.99664 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.020233 B = 0.009967 C = 0.008763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.518257 B = 2808.481619 C = 3194.470928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.084 3.916 3 Si 0.859 3.141 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.216 1.216 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.175 3.825 10 H 0.062 0.938 11 C -0.131 4.131 12 C -0.110 4.110 13 C -0.131 4.131 14 C 0.136 3.864 15 H 0.087 0.913 16 C -0.098 4.098 17 C -0.069 4.069 18 C -0.138 4.138 19 C -0.104 4.104 20 C -0.161 4.161 21 C 0.102 3.898 22 F -0.136 7.136 23 O -0.387 6.387 24 H 0.264 0.736 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.855 -0.046 9.164 14.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.120 4.120 3 Si 0.685 3.315 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.139 1.139 7 C -0.588 4.588 8 H 0.094 0.906 9 C 0.120 3.880 10 H 0.080 0.920 11 C -0.169 4.169 12 C -0.147 4.147 13 C -0.169 4.169 14 C 0.078 3.922 15 H 0.105 0.895 16 C -0.099 4.099 17 C -0.087 4.087 18 C -0.156 4.156 19 C -0.122 4.122 20 C -0.179 4.179 21 C 0.082 3.918 22 F -0.114 7.114 23 O -0.307 6.307 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.156 0.844 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.780 0.176 9.163 14.149 hybrid contribution -0.238 0.583 -0.023 0.630 sum 10.542 0.759 9.139 13.973 Atomic orbital electron populations 1.69954 1.06678 1.27326 1.48794 1.24996 0.94573 0.99706 0.92733 0.87185 0.83350 0.82531 0.78433 1.21208 1.22131 1.13865 1.21418 0.89534 0.94709 1.53174 0.90637 1.20161 0.94709 0.88699 0.84466 0.92036 1.21971 0.98492 0.98913 0.97500 1.21460 1.02127 0.96750 0.94396 1.22021 1.00195 0.96148 0.98534 1.20371 0.99465 0.89346 0.83055 0.89521 1.20125 0.96034 0.99903 0.93840 1.21017 0.94438 0.94171 0.99108 1.21201 1.00707 1.00461 0.93265 1.20898 0.94880 0.98699 0.97722 1.21026 0.98684 0.99815 0.98418 1.17549 0.84684 0.94953 0.94593 1.91500 1.48740 1.75097 1.96093 1.87992 1.74503 1.54977 1.13269 0.92646 0.91980 0.93782 0.93557 0.90672 0.92451 0.92387 0.84374 0.85778 0.85605 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.96 55.43 0.77 -26.42 16 2 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 3 Si 0.86 21.73 26.99 -169.99 -4.59 17.14 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.22 -5.25 5.30 56.52 0.30 -4.95 16 7 C -0.55 -15.05 7.17 -34.44 -0.25 -15.29 16 8 H 0.08 2.23 7.12 -52.48 -0.37 1.85 16 9 C 0.18 4.06 2.65 -27.83 -0.07 3.99 16 10 H 0.06 1.43 7.57 -51.93 -0.39 1.04 16 11 C -0.13 -2.58 5.59 -26.59 -0.15 -2.73 16 12 C -0.11 -2.07 5.78 -26.55 -0.15 -2.22 16 13 C -0.13 -2.42 5.40 -26.59 -0.14 -2.56 16 14 C 0.14 2.86 2.36 -27.83 -0.07 2.80 16 15 H 0.09 2.15 6.74 -51.93 -0.35 1.80 16 16 C -0.10 -1.84 5.07 -104.55 -0.53 -2.37 16 17 C -0.07 -1.15 9.35 -39.59 -0.37 -1.52 16 18 C -0.14 -1.86 10.04 -39.58 -0.40 -2.25 16 19 C -0.10 -1.31 10.04 -39.60 -0.40 -1.70 16 20 C -0.16 -2.29 10.03 -39.52 -0.40 -2.69 16 21 C 0.10 1.79 7.24 -39.42 -0.29 1.51 16 22 F -0.14 -2.57 16.57 2.25 0.04 -2.53 16 23 O -0.39 -8.75 5.89 -35.23 -0.21 -8.95 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.58 6.85 -51.93 -0.36 1.22 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.14 2.28 7.36 -52.49 -0.39 1.89 16 32 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 33 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 34 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 277.96 15.07 4.19 4.19 Total: -1.00 -30.17 277.96 -7.58 -37.76 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -4.48 Total: 1.54 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -3.31 Total: -22.72 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.77 Total: -26.42 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.21 Total: -8.95 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.59 Total: 17.14 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.17 -7.58 -37.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309453906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.253 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds