Wall clock time and date at job start Mon Mar 30 2020 06:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00251 * 2 1 4 4 H 1.48498 * 109.46823 * 270.00068 * 3 2 1 5 5 H 1.48496 * 109.46870 * 29.99921 * 3 2 1 6 6 H 1.48496 * 109.46760 * 150.00266 * 3 2 1 7 7 C 1.37878 * 119.99502 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00348 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99693 * 179.97438 * 7 2 1 10 10 H 1.09004 * 109.49162 * 299.96857 * 9 7 2 11 11 C 1.53100 * 109.48046 * 179.97438 * 9 7 2 12 12 C 1.53178 * 109.16395 * 297.62901 * 11 9 7 13 13 C 1.53181 * 109.03300 * 303.01709 * 12 11 9 14 14 C 1.53096 * 109.16280 * 56.98248 * 13 12 11 15 15 H 1.08997 * 109.47878 * 62.37549 * 14 13 12 16 16 C 1.50704 * 109.47784 * 182.39395 * 14 13 12 17 17 C 1.38222 * 120.00942 * 94.72714 * 16 14 13 18 18 C 1.38220 * 120.01957 * 179.71910 * 17 16 14 19 19 C 1.38262 * 120.05597 * 0.55566 * 18 17 16 20 20 C 1.38175 * 120.02323 * 359.71841 * 19 18 17 21 21 C 1.38441 * 120.01391 * 274.99911 * 16 14 13 22 22 F 1.35097 * 120.02298 * 359.97438 * 21 16 14 23 23 O 1.42894 * 109.41507 * 302.38730 * 14 13 12 24 24 H 0.97008 * 119.99621 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.51667 * 57.53422 * 11 9 7 26 26 H 1.08997 * 109.52347 * 177.65785 * 11 9 7 27 27 H 1.09000 * 109.54365 * 183.15369 * 12 11 9 28 28 H 1.09003 * 109.54455 * 62.87879 * 12 11 9 29 29 H 1.08998 * 109.52547 * 297.07448 * 13 12 11 30 30 H 1.09004 * 109.52249 * 176.88328 * 13 12 11 31 31 H 1.07998 * 119.98800 * 359.97438 * 17 16 14 32 32 H 1.08008 * 119.97137 * 180.25045 * 18 17 16 33 33 H 1.08005 * 119.99148 * 179.74201 * 19 18 17 34 34 H 1.07998 * 120.01490 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8748 -0.6815 -0.8907 11 6 4.0220 -2.6375 0.0014 12 6 3.5576 -3.3339 1.2842 13 6 4.0588 -2.5388 2.4938 14 6 3.5469 -1.0993 2.3961 15 1 2.4574 -1.0980 2.4279 16 6 4.0843 -0.2953 3.5519 17 6 5.2390 0.4490 3.3987 18 6 5.7289 1.1910 4.4569 19 6 5.0712 1.1807 5.6731 20 6 3.9200 0.4330 5.8302 21 6 3.4249 -0.3064 4.7691 22 9 2.2991 -1.0374 4.9214 23 8 3.9885 -0.5205 1.1665 24 1 -0.4850 0.8401 -0.0004 25 1 3.6232 -3.1657 -0.8647 26 1 5.1111 -2.6387 -0.0410 27 1 3.9644 -4.3446 1.3183 28 1 2.4685 -3.3769 1.3021 29 1 5.1488 -2.5380 2.5029 30 1 3.6863 -2.9964 3.4103 31 1 5.7562 0.4539 2.4506 32 1 6.6289 1.7755 4.3351 33 1 5.4573 1.7577 6.5005 34 1 3.4062 0.4254 6.7801 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309453906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:14 Heat of formation + Delta-G solvation = -90.346304 kcal Electronic energy + Delta-G solvation = -18967.664388 eV Core-core repulsion = 15971.857702 eV Total energy + Delta-G solvation = -2995.806686 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.89530 -40.72358 -39.29622 -34.82022 -34.32957 -33.52196 -31.43972 -30.49571 -27.81161 -25.41060 -23.98518 -23.54021 -22.29067 -20.67958 -18.83657 -18.58640 -17.41834 -17.30524 -16.73552 -16.56303 -15.97833 -15.83149 -15.50536 -15.09946 -14.86886 -14.51126 -14.11928 -14.04989 -13.64361 -13.51536 -13.10472 -12.87742 -12.71449 -12.30132 -12.05173 -11.99970 -11.80970 -11.60326 -11.37205 -10.81983 -10.69666 -10.06179 -9.74553 -9.45518 -8.34636 -6.44976 0.21641 0.32362 1.33720 1.38841 1.66809 2.40432 2.67861 2.91986 3.21864 3.39296 3.78028 3.95496 4.11032 4.15082 4.16261 4.32809 4.42113 4.46133 4.53638 4.65195 4.83936 4.86735 5.02704 5.10104 5.16678 5.19663 5.24313 5.25522 5.37310 5.43200 5.52697 5.57675 5.66129 6.01043 6.08895 6.64147 6.76697 7.31061 8.79689 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.020233 B = 0.009967 C = 0.008763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.518257 B = 2808.481619 C = 3194.470928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.027 3.973 3 Si 0.918 3.082 4 H -0.276 1.276 5 H -0.304 1.304 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.037 0.963 9 C 0.172 3.828 10 H 0.067 0.933 11 C -0.127 4.127 12 C -0.109 4.109 13 C -0.124 4.124 14 C 0.138 3.862 15 H 0.033 0.967 16 C -0.128 4.128 17 C -0.083 4.083 18 C -0.126 4.126 19 C -0.089 4.089 20 C -0.156 4.156 21 C 0.068 3.932 22 F -0.156 7.156 23 O -0.387 6.387 24 H 0.263 0.737 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.136 0.864 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.469 1.172 10.746 18.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.172 4.172 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.231 1.231 6 H -0.120 1.120 7 C -0.580 4.580 8 H 0.056 0.944 9 C 0.116 3.884 10 H 0.085 0.915 11 C -0.165 4.165 12 C -0.147 4.147 13 C -0.162 4.162 14 C 0.080 3.920 15 H 0.051 0.949 16 C -0.129 4.129 17 C -0.101 4.101 18 C -0.143 4.143 19 C -0.106 4.106 20 C -0.174 4.174 21 C 0.049 3.951 22 F -0.135 7.135 23 O -0.307 6.307 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.154 0.846 32 H 0.180 0.820 33 H 0.189 0.811 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 14.416 1.378 10.741 18.031 hybrid contribution -1.355 0.161 -0.428 1.430 sum 13.061 1.539 10.313 16.713 Atomic orbital electron populations 1.70093 1.08451 1.27977 1.51616 1.25823 0.95181 1.03328 0.92852 0.86269 0.82560 0.78150 0.78809 1.20197 1.23123 1.11991 1.21685 0.92097 0.92968 1.51207 0.94446 1.20139 0.91778 0.91412 0.85077 0.91495 1.21922 1.00239 0.96384 0.97907 1.21447 1.00021 0.98755 0.94441 1.21965 1.01342 0.94390 0.98468 1.20266 0.96653 0.91721 0.83404 0.94868 1.20035 0.97873 1.01695 0.93305 1.21114 0.93922 0.94772 1.00298 1.21629 1.01385 0.98991 0.92339 1.21446 0.93289 0.97221 0.98670 1.21405 0.99200 0.98601 0.98243 1.17966 0.84814 0.96560 0.95725 1.91444 1.49931 1.75875 1.96221 1.87920 1.73867 1.55407 1.13541 0.92813 0.91909 0.90660 0.90168 0.94290 0.90163 0.91881 0.84648 0.82028 0.81086 0.82733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.46 13.96 21.45 0.30 -60.16 16 2 C 0.03 1.61 5.47 84.65 0.46 2.08 16 3 Si 0.92 45.82 26.99 68.60 1.85 47.68 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 6 H -0.20 -9.24 5.30 99.48 0.53 -8.71 16 7 C -0.54 -30.87 7.17 25.60 0.18 -30.69 16 8 H 0.04 2.36 7.12 -2.91 -0.02 2.34 16 9 C 0.17 7.97 2.65 29.88 0.08 8.05 16 10 H 0.07 3.04 7.57 -2.38 -0.02 3.02 16 11 C -0.13 -4.86 5.59 30.69 0.17 -4.69 16 12 C -0.11 -4.08 5.78 30.71 0.18 -3.90 16 13 C -0.12 -4.50 5.40 30.69 0.17 -4.34 16 14 C 0.14 5.89 2.36 29.88 0.07 5.96 16 15 H 0.03 1.76 6.74 -2.39 -0.02 1.75 16 16 C -0.13 -4.72 5.07 -19.82 -0.10 -4.82 16 17 C -0.08 -2.53 9.35 22.26 0.21 -2.32 16 18 C -0.13 -2.78 10.04 22.27 0.22 -2.55 16 19 C -0.09 -1.77 10.04 22.26 0.22 -1.55 16 20 C -0.16 -3.98 10.03 22.31 0.22 -3.76 16 21 C 0.07 2.38 7.24 22.37 0.16 2.54 16 22 F -0.16 -6.14 16.57 44.97 0.75 -5.39 16 23 O -0.39 -17.28 5.89 -148.98 -0.88 -18.16 16 24 H 0.26 16.01 8.31 -92.70 -0.77 15.24 16 25 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 26 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.04 1.71 6.85 -2.39 -0.02 1.70 16 29 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.14 4.12 7.36 -2.91 -0.02 4.09 16 32 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 33 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 34 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -69.83 277.96 5.18 -64.65 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.91 Total: 11.38 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 2.25 Total: -39.99 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.30 Total: -60.16 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.88 Total: -18.16 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.75 Total: -5.39 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.85 Total: 47.68 kcal Total: -69.83 5.18 -64.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309453906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.693 kcal (2) G-P(sol) polarization free energy of solvation -69.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds