Wall clock time and date at job start Mon Mar 30 2020 06:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99848 * 2 1 4 4 H 1.48494 * 109.47604 * 270.00456 * 3 2 1 5 5 H 1.48501 * 109.47045 * 30.00529 * 3 2 1 6 6 H 1.48504 * 109.46874 * 150.00084 * 3 2 1 7 7 C 1.37874 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00118 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00090 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47982 * 59.98268 * 9 7 2 11 11 C 1.53092 * 109.48402 * 180.02562 * 9 7 2 12 12 C 1.53176 * 109.16579 * 177.59477 * 11 9 7 13 13 C 1.53173 * 109.03467 * 303.01657 * 12 11 9 14 14 C 1.53099 * 109.16354 * 56.97939 * 13 12 11 15 15 H 1.08998 * 109.47717 * 62.38690 * 14 13 12 16 16 C 1.50699 * 109.48026 * 182.40567 * 14 13 12 17 17 C 1.38219 * 120.00977 * 94.99975 * 16 14 13 18 18 C 1.38227 * 120.02402 * 179.74165 * 17 16 14 19 19 C 1.38262 * 120.05195 * 0.25898 * 18 17 16 20 20 C 1.38177 * 120.02487 * 359.97438 * 19 18 17 21 21 C 1.38438 * 120.01661 * 275.25746 * 16 14 13 22 22 F 1.35104 * 120.02404 * 359.97438 * 21 16 14 23 23 O 1.42893 * 109.41378 * 302.39227 * 14 13 12 24 24 H 0.97007 * 120.00512 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.52345 * 57.68254 * 11 9 7 26 26 H 1.09006 * 109.56871 * 297.52986 * 11 9 7 27 27 H 1.08995 * 109.54111 * 183.15158 * 12 11 9 28 28 H 1.09001 * 109.61281 * 62.92857 * 12 11 9 29 29 H 1.08997 * 109.52538 * 297.07422 * 13 12 11 30 30 H 1.08999 * 109.52192 * 176.88793 * 13 12 11 31 31 H 1.08002 * 119.99072 * 0.02773 * 17 16 14 32 32 H 1.07998 * 119.97011 * 180.23492 * 18 17 16 33 33 H 1.08004 * 119.99089 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.01221 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6238 -2.5567 -0.8901 11 6 2.2457 -3.6629 -0.0005 12 6 1.4735 -4.9844 0.0602 13 6 0.5795 -4.9839 1.3039 14 6 -0.3509 -3.7690 1.2536 15 1 -0.9991 -3.8436 0.3805 16 6 -1.1929 -3.7288 2.5028 17 6 -0.7928 -2.9633 3.5818 18 6 -1.5677 -2.9220 4.7257 19 6 -2.7409 -3.6503 4.7940 20 6 -3.1404 -4.4201 3.7183 21 6 -2.3647 -4.4627 2.5720 22 9 -2.7543 -5.2150 1.5196 23 8 0.4304 -2.5757 1.1669 24 1 -0.4851 0.8401 0.0004 25 1 2.8998 -3.5830 0.8676 26 1 2.8438 -3.6320 -0.9113 27 1 2.1766 -5.8152 0.1169 28 1 0.8566 -5.0890 -0.8323 29 1 1.1999 -4.9307 2.1985 30 1 -0.0150 -5.8973 1.3256 31 1 0.1232 -2.3935 3.5295 32 1 -1.2562 -2.3205 5.5669 33 1 -3.3454 -3.6177 5.6885 34 1 -4.0571 -4.9887 3.7717 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309453910.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:18 Heat of formation + Delta-G solvation = -96.609748 kcal Electronic energy + Delta-G solvation = -18526.709843 eV Core-core repulsion = 15530.631554 eV Total energy + Delta-G solvation = -2996.078289 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.90067 -40.55754 -39.15780 -35.07336 -34.22143 -33.27563 -31.43816 -30.48542 -27.58235 -25.45963 -23.89363 -23.50913 -22.21821 -20.92334 -18.86957 -18.38049 -17.52676 -17.05224 -16.64538 -16.48509 -16.21819 -15.88256 -15.30541 -15.14093 -14.83332 -14.54271 -14.07767 -14.04331 -13.52017 -13.08836 -12.92863 -12.85309 -12.60650 -12.51619 -12.12649 -12.04428 -11.88960 -11.79910 -11.32137 -10.91164 -10.59667 -10.02622 -9.75606 -9.47775 -8.15767 -6.37263 0.21722 0.33485 1.40465 1.41729 1.52851 2.39659 2.68216 2.95021 3.32090 3.44333 3.79417 3.94393 4.05501 4.08051 4.14835 4.26308 4.39359 4.41657 4.52058 4.56634 4.79983 4.89267 4.98038 5.04298 5.11209 5.14539 5.17451 5.22810 5.27899 5.47993 5.53243 5.59914 5.75447 6.00893 6.18495 6.65145 7.13184 7.39048 8.91890 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.022434 B = 0.007612 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.791619 B = 3677.532266 C = 4419.262878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.550 4.550 8 H 0.068 0.932 9 C 0.215 3.785 10 H -0.026 1.026 11 C -0.136 4.136 12 C -0.115 4.115 13 C -0.129 4.129 14 C 0.118 3.882 15 H 0.024 0.976 16 C -0.122 4.122 17 C -0.083 4.083 18 C -0.129 4.129 19 C -0.087 4.087 20 C -0.152 4.152 21 C 0.075 3.925 22 F -0.150 7.150 23 O -0.371 6.371 24 H 0.261 0.739 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.154 0.846 33 H 0.173 0.827 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 -8.981 8.935 13.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.587 4.587 8 H 0.086 0.914 9 C 0.159 3.841 10 H -0.008 1.008 11 C -0.174 4.174 12 C -0.152 4.152 13 C -0.166 4.166 14 C 0.060 3.940 15 H 0.042 0.958 16 C -0.123 4.123 17 C -0.101 4.101 18 C -0.147 4.147 19 C -0.105 4.105 20 C -0.170 4.170 21 C 0.056 3.944 22 F -0.129 7.129 23 O -0.291 6.291 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.134 0.866 32 H 0.172 0.828 33 H 0.191 0.809 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.934 -8.771 9.021 13.182 hybrid contribution 0.247 0.722 -0.947 1.216 sum -3.687 -8.048 8.074 11.982 Atomic orbital electron populations 1.70196 1.07748 1.27387 1.48081 1.25965 0.95591 1.03094 0.93146 0.85506 0.78755 0.78506 0.78532 1.19567 1.20830 1.18745 1.21414 0.93120 0.91015 1.53150 0.91410 1.19606 0.87357 0.93664 0.83451 1.00825 1.22109 0.98699 0.95066 1.01481 1.21606 0.98623 0.97839 0.97173 1.22043 0.98147 0.97134 0.99299 1.20586 0.91957 0.88333 0.93156 0.95770 1.19909 0.95526 0.99855 0.97041 1.20990 1.00433 0.96277 0.92409 1.21563 0.95216 1.00035 0.97839 1.21428 0.95962 0.94320 0.98791 1.21406 1.01024 1.02704 0.91901 1.17782 0.94980 0.95460 0.86168 1.91428 1.90803 1.74228 1.56430 1.88229 1.58313 1.37151 1.45430 0.93004 0.92424 0.91600 0.89284 0.92777 0.91278 0.90531 0.86586 0.82845 0.80925 0.82035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.94 12.84 21.45 0.28 -54.67 16 2 C 0.02 1.42 5.40 84.65 0.46 1.87 16 3 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -31.63 8.79 25.60 0.23 -31.41 16 8 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 9 C 0.21 11.61 2.50 29.88 0.07 11.68 16 10 H -0.03 -1.55 8.14 -2.39 -0.02 -1.57 16 11 C -0.14 -5.82 5.36 30.68 0.16 -5.66 16 12 C -0.12 -4.10 6.03 30.71 0.19 -3.92 16 13 C -0.13 -4.72 5.40 30.69 0.17 -4.55 16 14 C 0.12 5.29 2.63 29.88 0.08 5.37 16 15 H 0.02 1.19 7.80 -2.39 -0.02 1.17 16 16 C -0.12 -4.83 5.07 -19.82 -0.10 -4.93 16 17 C -0.08 -3.04 9.35 22.26 0.21 -2.84 16 18 C -0.13 -3.46 10.04 22.27 0.22 -3.24 16 19 C -0.09 -1.93 10.04 22.26 0.22 -1.71 16 20 C -0.15 -3.89 10.03 22.31 0.22 -3.66 16 21 C 0.08 2.58 7.24 22.37 0.16 2.74 16 22 F -0.15 -5.33 16.57 44.97 0.75 -4.58 16 23 O -0.37 -19.94 8.27 -148.98 -1.23 -21.17 16 24 H 0.26 15.09 8.31 -92.70 -0.77 14.31 16 25 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 27 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.12 4.80 7.35 -2.91 -0.02 4.78 16 32 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 33 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -68.47 288.81 5.19 -63.29 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 1.08 Total: 11.07 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 2.29 Total: -40.26 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.28 Total: -54.67 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -1.23 Total: -21.17 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.75 Total: -4.58 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -68.47 5.19 -63.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309453910.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.325 kcal (2) G-P(sol) polarization free energy of solvation -68.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds