Wall clock time and date at job start Mon Mar 30 2020 06:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00622 * 2 1 4 4 H 1.48498 * 109.47326 * 270.00546 * 3 2 1 5 5 H 1.48501 * 109.46921 * 30.00204 * 3 2 1 6 6 H 1.48500 * 109.47573 * 149.99946 * 3 2 1 7 7 C 1.37878 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99871 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00019 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.48236 * 59.97828 * 9 7 2 11 11 C 1.53097 * 109.47797 * 179.97438 * 9 7 2 12 12 C 1.53174 * 109.16185 * 62.38741 * 11 9 7 13 13 C 1.53176 * 109.04061 * 56.97999 * 12 11 9 14 14 C 1.53091 * 109.21206 * 302.98570 * 13 12 11 15 15 H 1.09000 * 109.48171 * 297.66002 * 14 13 12 16 16 C 1.50704 * 109.48023 * 177.62153 * 14 13 12 17 17 C 1.38211 * 120.01433 * 264.99934 * 16 14 13 18 18 C 1.38221 * 120.02716 * 179.97438 * 17 16 14 19 19 C 1.38265 * 120.05112 * 0.02562 * 18 17 16 20 20 C 1.38172 * 120.02672 * 0.02562 * 19 18 17 21 21 C 1.38439 * 120.00843 * 84.72780 * 16 14 13 22 22 F 1.35101 * 120.02905 * 359.97438 * 21 16 14 23 23 O 1.42902 * 109.48783 * 299.94456 * 9 7 2 24 24 H 0.97004 * 119.99394 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.52587 * 302.47593 * 11 9 7 26 26 H 1.09004 * 109.57034 * 182.32094 * 11 9 7 27 27 H 1.08995 * 109.54500 * 297.10556 * 12 11 9 28 28 H 1.09007 * 109.61482 * 176.88750 * 12 11 9 29 29 H 1.09002 * 109.52410 * 62.92413 * 13 12 11 30 30 H 1.09004 * 109.52533 * 183.05059 * 13 12 11 31 31 H 1.08002 * 119.98683 * 359.95921 * 17 16 14 32 32 H 1.08001 * 119.97464 * 180.02562 * 18 17 16 33 33 H 1.08007 * 119.98875 * 179.97438 * 19 18 17 34 34 H 1.08005 * 120.01825 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6525 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0017 10 1 0.6242 -2.5563 -0.8917 11 6 2.2455 -3.6630 -0.0027 12 6 3.0819 -3.6107 1.2794 13 6 2.1440 -3.6487 2.4898 14 6 1.1533 -2.4853 2.3962 15 1 1.6971 -1.5412 2.4285 16 6 0.1903 -2.5508 3.5536 17 6 -1.0341 -3.1732 3.3998 18 6 -1.9173 -3.2339 4.4613 19 6 -1.5773 -2.6718 5.6779 20 6 -0.3542 -2.0483 5.8338 21 6 0.5342 -1.9926 4.7729 22 9 1.7333 -1.3894 4.9261 23 8 0.4296 -2.5765 1.1653 24 1 -0.4849 0.8401 0.0004 25 1 2.9015 -3.5808 -0.8693 26 1 1.7025 -4.6073 -0.0452 27 1 3.6639 -2.6893 1.2978 28 1 3.7548 -4.4676 1.3125 29 1 1.5982 -4.5922 2.4983 30 1 2.7276 -3.5572 3.4059 31 1 -1.3011 -3.6120 2.4497 32 1 -2.8738 -3.7207 4.3403 33 1 -2.2684 -2.7195 6.5066 34 1 -0.0889 -1.6089 6.7841 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309453912.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:20 Heat of formation + Delta-G solvation = -94.736680 kcal Electronic energy + Delta-G solvation = -18864.860882 eV Core-core repulsion = 15868.863815 eV Total energy + Delta-G solvation = -2995.997067 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.86443 -40.53919 -39.17212 -34.79107 -34.13867 -33.27677 -31.40596 -30.28627 -27.60355 -25.35513 -24.05817 -23.50932 -22.20351 -20.77775 -18.55021 -18.41991 -17.28829 -17.16102 -16.69209 -16.56238 -15.94736 -15.74355 -15.27639 -15.11771 -14.85778 -14.49276 -14.02818 -13.71578 -13.55026 -13.11804 -12.99867 -12.85387 -12.76791 -12.50802 -12.22971 -11.99013 -11.83364 -11.57259 -11.31297 -10.76888 -10.49800 -9.96839 -9.71368 -9.40624 -8.12581 -6.32465 0.25608 0.36619 1.33733 1.35692 1.44373 2.36757 2.72101 3.05446 3.34180 3.45103 3.85540 4.00458 4.15203 4.19290 4.20643 4.36539 4.48572 4.52432 4.59209 4.71881 4.90004 4.93573 5.08572 5.14876 5.20741 5.21851 5.29574 5.33705 5.43933 5.49889 5.59094 5.67864 5.78934 6.04466 6.14239 6.73314 7.08209 7.43884 8.91605 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.020363 B = 0.008999 C = 0.007927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.695464 B = 3110.836407 C = 3531.286783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.030 3.970 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.563 4.563 8 H 0.055 0.945 9 C 0.205 3.795 10 H 0.032 0.968 11 C -0.134 4.134 12 C -0.105 4.105 13 C -0.128 4.128 14 C 0.144 3.856 15 H 0.031 0.969 16 C -0.122 4.122 17 C -0.084 4.084 18 C -0.127 4.127 19 C -0.091 4.091 20 C -0.155 4.155 21 C 0.069 3.931 22 F -0.154 7.154 23 O -0.383 6.383 24 H 0.258 0.742 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.158 0.842 33 H 0.172 0.828 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.456 -7.192 10.722 12.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.172 4.172 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.601 4.601 8 H 0.074 0.926 9 C 0.149 3.851 10 H 0.050 0.950 11 C -0.172 4.172 12 C -0.142 4.142 13 C -0.165 4.165 14 C 0.086 3.914 15 H 0.049 0.951 16 C -0.123 4.123 17 C -0.102 4.102 18 C -0.144 4.144 19 C -0.108 4.108 20 C -0.173 4.173 21 C 0.050 3.950 22 F -0.133 7.133 23 O -0.302 6.302 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.176 0.824 33 H 0.190 0.810 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.758 -7.093 10.704 12.961 hybrid contribution 1.004 1.443 -0.516 1.832 sum -0.754 -5.650 10.188 11.674 Atomic orbital electron populations 1.70171 1.07169 1.26887 1.48784 1.25739 0.95423 1.02153 0.93908 0.85859 0.78979 0.80155 0.78567 1.19363 1.21225 1.19390 1.21819 0.93161 0.92280 1.52852 0.92638 1.19659 0.88857 0.92242 0.84314 0.95036 1.22061 0.98643 0.98412 0.98101 1.21427 0.97359 1.01500 0.93958 1.22012 0.97518 0.98298 0.98706 1.20205 0.90550 0.96845 0.83798 0.95088 1.20067 0.98090 1.00713 0.93461 1.21021 0.92101 0.97252 0.99812 1.21587 1.00264 1.00154 0.92441 1.21417 0.95390 0.95545 0.98470 1.21396 0.94653 1.02974 0.98282 1.17895 0.82804 0.98808 0.95532 1.91425 1.44028 1.81612 1.96203 1.87836 1.35580 1.93684 1.13146 0.93258 0.91766 0.92323 0.93207 0.90269 0.91203 0.91550 0.85791 0.82412 0.81013 0.82457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.86 12.84 21.45 0.28 -53.58 16 2 C 0.03 1.73 5.40 84.66 0.46 2.19 16 3 Si 0.94 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.56 -31.40 6.60 25.60 0.17 -31.23 16 8 H 0.06 3.04 6.87 -2.91 -0.02 3.02 16 9 C 0.21 10.66 3.16 29.88 0.09 10.75 16 10 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 11 C -0.13 -5.58 5.59 30.69 0.17 -5.40 16 12 C -0.11 -3.99 5.78 30.71 0.18 -3.82 16 13 C -0.13 -4.92 5.40 30.68 0.17 -4.75 16 14 C 0.14 6.68 2.36 29.88 0.07 6.75 16 15 H 0.03 1.69 6.75 -2.39 -0.02 1.67 16 16 C -0.12 -4.96 5.07 -19.82 -0.10 -5.06 16 17 C -0.08 -2.97 9.35 22.26 0.21 -2.77 16 18 C -0.13 -3.30 10.04 22.27 0.22 -3.08 16 19 C -0.09 -2.05 10.04 22.26 0.22 -1.83 16 20 C -0.15 -4.23 10.03 22.31 0.22 -4.00 16 21 C 0.07 2.52 7.24 22.38 0.16 2.68 16 22 F -0.15 -6.06 16.58 44.97 0.75 -5.32 16 23 O -0.38 -19.91 8.49 -148.98 -1.26 -21.17 16 24 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 25 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.05 2.08 6.85 -2.39 -0.02 2.06 16 28 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 29 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.12 4.66 7.35 -2.91 -0.02 4.64 16 32 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -66.36 283.99 5.12 -61.24 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.09 Total: 11.39 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 2.25 Total: -39.57 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.28 Total: -53.58 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -1.26 Total: -21.17 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.75 Total: -5.32 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -66.36 5.12 -61.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309453912.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.492 kcal (2) G-P(sol) polarization free energy of solvation -66.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds