Wall clock time and date at job start Mon Mar 30 2020 06:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08997 * 109.47746 * 299.69820 * 9 7 2 11 11 C 1.53089 * 109.47688 * 179.66252 * 9 7 2 12 12 C 1.53181 * 109.16039 * 182.40779 * 11 9 7 13 13 C 1.53178 * 109.03706 * 56.97697 * 12 11 9 14 14 C 1.53081 * 109.16730 * 303.02353 * 13 12 11 15 15 H 1.09008 * 109.48888 * 297.61938 * 14 13 12 16 16 C 1.50699 * 109.48290 * 177.59051 * 14 13 12 17 17 C 1.38269 * 119.98522 * 279.77948 * 16 14 13 18 18 C 1.38224 * 120.05033 * 179.76886 * 17 16 14 19 19 C 1.38218 * 120.02504 * 0.50505 * 18 17 16 20 20 C 1.38442 * 119.97518 * 359.75069 * 19 18 17 21 21 F 1.35100 * 120.02432 * 179.97438 * 20 19 18 22 22 C 1.38179 * 119.98957 * 100.05861 * 16 14 13 23 23 O 1.42902 * 109.47974 * 59.71691 * 9 7 2 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.52556 * 302.30659 * 11 9 7 26 26 H 1.08993 * 109.52333 * 62.50696 * 11 9 7 27 27 H 1.09001 * 109.54417 * 297.11559 * 12 11 9 28 28 H 1.08995 * 109.61833 * 176.89286 * 12 11 9 29 29 H 1.09005 * 109.52082 * 183.11261 * 13 12 11 30 30 H 1.09009 * 109.51828 * 62.92947 * 13 12 11 31 31 H 1.07993 * 119.97620 * 0.02562 * 17 16 14 32 32 H 1.08000 * 119.98634 * 180.25598 * 18 17 16 33 33 H 1.08000 * 120.01479 * 179.72251 * 19 18 17 34 34 H 1.08003 * 120.01203 * 359.95146 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6245 -2.5612 0.8845 11 6 2.2456 -3.6629 -0.0119 12 6 1.4732 -4.9841 -0.0787 13 6 0.5780 -4.9773 -1.3217 14 6 -0.3521 -3.7628 -1.2645 15 1 -0.9997 -3.8414 -0.3912 16 6 -1.1952 -3.7162 -2.5128 17 6 -0.6668 -3.2077 -3.6850 18 6 -1.4373 -3.1687 -4.8319 19 6 -2.7405 -3.6286 -4.8055 20 6 -3.2723 -4.1331 -3.6311 21 9 -4.5461 -4.5824 -3.6040 22 6 -2.4977 -4.1764 -2.4840 23 8 0.4293 -2.5698 -1.1724 24 1 -0.4850 0.8401 -0.0004 25 1 2.8989 -3.5788 -0.8803 26 1 2.8435 -3.6363 0.8990 27 1 0.8568 -5.0916 0.8139 28 1 2.1751 -5.8157 -0.1394 29 1 -0.0165 -5.8906 -1.3474 30 1 1.1978 -4.9197 -2.2166 31 1 0.3500 -2.8444 -3.7055 32 1 -1.0222 -2.7751 -5.7479 33 1 -3.3438 -3.5939 -5.7006 34 1 -2.9114 -4.5702 -1.5673 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309458375.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:33 Heat of formation + Delta-G solvation = -81.507915 kcal Electronic energy + Delta-G solvation = -18242.736368 eV Core-core repulsion = 15247.312943 eV Total energy + Delta-G solvation = -2995.423425 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.66522 -39.22671 -37.56924 -33.13308 -32.52864 -31.62472 -30.22776 -28.88936 -25.71382 -23.90004 -22.49447 -21.99812 -20.79971 -19.25002 -17.18181 -16.55204 -15.99705 -15.81994 -15.36292 -14.77900 -14.58070 -14.33228 -13.98842 -13.73559 -13.34551 -12.78682 -12.75971 -12.33526 -12.00297 -11.72200 -11.30919 -11.10603 -10.97945 -10.78775 -10.70617 -10.39108 -10.29727 -9.90615 -9.69049 -8.94331 -8.71897 -8.51988 -8.34227 -7.88970 -6.03633 -4.16328 1.48739 1.50395 3.29658 3.36502 3.38683 3.89620 4.38984 4.42211 4.81799 5.08328 5.15596 5.31840 5.47051 5.48697 5.58557 5.65707 5.68071 5.84431 6.04191 6.06543 6.15731 6.28217 6.34352 6.36481 6.52189 6.59080 6.67079 6.79893 6.81954 6.86376 7.00031 7.21153 7.48135 7.87134 8.24616 8.73543 9.07086 9.54207 11.03635 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.022230 B = 0.006834 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.243336 B = 4096.180696 C = 4828.436191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.079 3.921 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.064 0.936 9 C 0.219 3.781 10 H 0.014 0.986 11 C -0.144 4.144 12 C -0.120 4.120 13 C -0.139 4.139 14 C 0.120 3.880 15 H 0.052 0.948 16 C -0.029 4.029 17 C -0.096 4.096 18 C -0.098 4.098 19 C -0.164 4.164 20 C 0.088 3.912 21 F -0.147 7.147 22 C -0.149 4.149 23 O -0.347 6.347 24 H 0.261 0.739 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 -8.668 -6.039 10.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.128 4.128 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.082 0.918 9 C 0.164 3.836 10 H 0.032 0.968 11 C -0.182 4.182 12 C -0.158 4.158 13 C -0.177 4.177 14 C 0.061 3.939 15 H 0.070 0.930 16 C -0.029 4.029 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.183 4.183 20 C 0.069 3.931 21 F -0.126 7.126 22 C -0.168 4.168 23 O -0.266 6.266 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.863 -8.428 -6.160 10.825 hybrid contribution 0.095 0.643 0.149 0.666 sum -2.768 -7.785 -6.011 10.218 Atomic orbital electron populations 1.70037 1.06015 1.26577 1.46689 1.25075 0.94768 0.99269 0.93674 0.86628 0.79953 0.83337 0.78258 1.20474 1.21138 1.19732 1.20997 0.92669 0.89609 1.53159 0.91753 1.19732 0.86996 0.92196 0.84677 0.96797 1.22263 0.99622 0.95148 1.01178 1.21621 0.98354 0.98490 0.97328 1.22153 0.98537 0.97875 0.99127 1.20643 0.91939 0.88572 0.92786 0.93022 1.19717 0.92656 0.94992 0.95554 1.21179 1.01288 0.97433 0.91512 1.21006 0.93131 0.98717 0.98744 1.21022 0.97037 1.03202 0.97015 1.17582 0.79395 1.00884 0.95273 1.91456 1.36638 1.87238 1.97259 1.20933 0.94277 1.03979 0.97590 1.88392 1.57520 1.34397 1.46333 0.92928 0.92435 0.92376 0.92595 0.92935 0.92462 0.91572 0.84585 0.85361 0.85413 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.02 12.83 55.43 0.71 -24.31 16 2 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.48 8.80 -34.44 -0.30 -14.79 16 8 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 9 C 0.22 5.50 2.50 -27.84 -0.07 5.43 16 10 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 11 C -0.14 -2.95 5.36 -26.59 -0.14 -3.09 16 12 C -0.12 -2.05 6.03 -26.55 -0.16 -2.21 16 13 C -0.14 -2.35 5.40 -26.60 -0.14 -2.50 16 14 C 0.12 2.39 2.85 -27.84 -0.08 2.31 16 15 H 0.05 1.06 8.00 -51.92 -0.42 0.64 16 16 C -0.03 -0.53 4.97 -104.63 -0.52 -1.05 16 17 C -0.10 -1.66 9.36 -39.58 -0.37 -2.03 16 18 C -0.10 -1.42 10.04 -39.59 -0.40 -1.82 16 19 C -0.16 -2.33 10.03 -39.51 -0.40 -2.73 16 20 C 0.09 1.38 7.30 -39.42 -0.29 1.09 16 21 F -0.15 -2.28 17.27 2.25 0.04 -2.24 16 22 C -0.15 -2.48 9.65 -39.51 -0.38 -2.86 16 23 O -0.35 -8.59 8.74 -35.23 -0.31 -8.90 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 31 H 0.14 2.45 7.77 -52.49 -0.41 2.04 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.13 1.98 8.04 -52.48 -0.42 1.56 16 LS Contribution 290.35 15.07 4.38 4.38 Total: -1.00 -29.40 290.35 -8.14 -37.54 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.59 Total: -0.38 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -3.35 Total: -22.15 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.71 Total: -24.31 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.31 Total: -8.90 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.40 -8.14 -37.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309458375.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.968 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds