Wall clock time and date at job start Mon Mar 30 2020 06:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08997 * 109.47746 * 299.69820 * 9 7 2 11 11 C 1.53089 * 109.47688 * 179.66252 * 9 7 2 12 12 C 1.53181 * 109.16039 * 182.40779 * 11 9 7 13 13 C 1.53178 * 109.03706 * 56.97697 * 12 11 9 14 14 C 1.53081 * 109.16730 * 303.02353 * 13 12 11 15 15 H 1.09008 * 109.48888 * 297.61938 * 14 13 12 16 16 C 1.50699 * 109.48290 * 177.59051 * 14 13 12 17 17 C 1.38269 * 119.98522 * 279.77948 * 16 14 13 18 18 C 1.38224 * 120.05033 * 179.76886 * 17 16 14 19 19 C 1.38218 * 120.02504 * 0.50505 * 18 17 16 20 20 C 1.38442 * 119.97518 * 359.75069 * 19 18 17 21 21 F 1.35100 * 120.02432 * 179.97438 * 20 19 18 22 22 C 1.38179 * 119.98957 * 100.05861 * 16 14 13 23 23 O 1.42902 * 109.47974 * 59.71691 * 9 7 2 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.52556 * 302.30659 * 11 9 7 26 26 H 1.08993 * 109.52333 * 62.50696 * 11 9 7 27 27 H 1.09001 * 109.54417 * 297.11559 * 12 11 9 28 28 H 1.08995 * 109.61833 * 176.89286 * 12 11 9 29 29 H 1.09005 * 109.52082 * 183.11261 * 13 12 11 30 30 H 1.09009 * 109.51828 * 62.92947 * 13 12 11 31 31 H 1.07993 * 119.97620 * 0.02562 * 17 16 14 32 32 H 1.08000 * 119.98634 * 180.25598 * 18 17 16 33 33 H 1.08000 * 120.01479 * 179.72251 * 19 18 17 34 34 H 1.08003 * 120.01203 * 359.95146 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6245 -2.5612 0.8845 11 6 2.2456 -3.6629 -0.0119 12 6 1.4732 -4.9841 -0.0787 13 6 0.5780 -4.9773 -1.3217 14 6 -0.3521 -3.7628 -1.2645 15 1 -0.9997 -3.8414 -0.3912 16 6 -1.1952 -3.7162 -2.5128 17 6 -0.6668 -3.2077 -3.6850 18 6 -1.4373 -3.1687 -4.8319 19 6 -2.7405 -3.6286 -4.8055 20 6 -3.2723 -4.1331 -3.6311 21 9 -4.5461 -4.5824 -3.6040 22 6 -2.4977 -4.1764 -2.4840 23 8 0.4293 -2.5698 -1.1724 24 1 -0.4850 0.8401 -0.0004 25 1 2.8989 -3.5788 -0.8803 26 1 2.8435 -3.6363 0.8990 27 1 0.8568 -5.0916 0.8139 28 1 2.1751 -5.8157 -0.1394 29 1 -0.0165 -5.8906 -1.3474 30 1 1.1978 -4.9197 -2.2166 31 1 0.3500 -2.8444 -3.7055 32 1 -1.0222 -2.7751 -5.7479 33 1 -3.3438 -3.5939 -5.7006 34 1 -2.9114 -4.5702 -1.5673 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309458375.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:33 Heat of formation + Delta-G solvation = -97.018407 kcal Electronic energy + Delta-G solvation = -18243.408954 eV Core-core repulsion = 15247.312943 eV Total energy + Delta-G solvation = -2996.096010 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.89019 -40.66370 -39.08472 -35.02197 -34.14106 -33.26480 -31.52407 -30.44276 -27.55313 -25.43902 -23.89909 -23.54988 -22.24810 -20.83823 -18.79187 -18.25845 -17.36621 -17.07401 -16.66645 -16.59331 -16.25478 -15.97225 -15.38933 -15.23274 -14.67560 -14.49942 -14.06487 -14.02609 -13.48355 -13.05600 -12.85845 -12.75675 -12.64914 -12.45203 -12.27494 -12.06904 -11.81645 -11.72723 -11.28591 -10.86400 -10.57995 -10.03361 -9.73905 -9.50556 -8.14205 -6.34526 0.22352 0.25780 1.41638 1.42615 1.53159 2.41005 2.61711 2.97492 3.23125 3.57608 3.84966 3.97076 4.07739 4.11536 4.14220 4.28853 4.34780 4.46437 4.49262 4.56244 4.84165 4.92118 4.96496 5.06379 5.13625 5.14282 5.18359 5.24355 5.29143 5.42345 5.54122 5.67991 5.78755 5.96923 6.21835 6.67890 7.18564 7.41709 8.93194 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.022230 B = 0.006834 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.243336 B = 4096.180696 C = 4828.436191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.549 4.549 8 H 0.066 0.934 9 C 0.216 3.784 10 H -0.022 1.022 11 C -0.137 4.137 12 C -0.115 4.115 13 C -0.130 4.130 14 C 0.114 3.886 15 H 0.035 0.965 16 C -0.051 4.051 17 C -0.114 4.114 18 C -0.088 4.088 19 C -0.153 4.153 20 C 0.082 3.918 21 F -0.145 7.145 22 C -0.158 4.158 23 O -0.374 6.374 24 H 0.260 0.740 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 -9.345 -7.559 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.586 4.586 8 H 0.084 0.916 9 C 0.160 3.840 10 H -0.005 1.005 11 C -0.175 4.175 12 C -0.153 4.153 13 C -0.168 4.168 14 C 0.055 3.945 15 H 0.053 0.947 16 C -0.051 4.051 17 C -0.132 4.132 18 C -0.106 4.106 19 C -0.171 4.171 20 C 0.063 3.937 21 F -0.124 7.124 22 C -0.176 4.176 23 O -0.294 6.294 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.180 0.820 33 H 0.180 0.820 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.613 -9.123 -7.678 12.206 hybrid contribution -0.051 0.808 0.595 1.004 sum -2.664 -8.315 -7.083 11.243 Atomic orbital electron populations 1.70181 1.07641 1.27281 1.48191 1.25923 0.95572 1.02939 0.93251 0.85559 0.78929 0.78796 0.78355 1.20084 1.20788 1.18534 1.21439 0.93087 0.91182 1.52941 0.91577 1.19588 0.87387 0.93451 0.83573 1.00474 1.22111 0.98745 0.95302 1.01298 1.21610 0.98691 0.97501 0.97479 1.22087 0.98188 0.97413 0.99115 1.20818 0.92123 0.88224 0.93320 0.94670 1.19638 0.93291 0.97028 0.95191 1.21203 1.01219 0.98297 0.92505 1.21321 0.92916 0.97509 0.98852 1.21401 0.96994 1.01197 0.97534 1.17713 0.79409 1.01027 0.95566 1.91462 1.36439 1.87229 1.97270 1.20995 0.93839 1.04259 0.98550 1.88270 1.58303 1.37315 1.45545 0.93088 0.92597 0.91877 0.92485 0.89505 0.89692 0.91343 0.86113 0.82034 0.82020 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.04 12.83 21.45 0.28 -53.76 16 2 C 0.03 1.46 5.40 84.66 0.46 1.92 16 3 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.55 -30.97 8.80 25.60 0.23 -30.74 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.22 11.21 2.50 29.88 0.07 11.28 16 10 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 11 C -0.14 -5.59 5.36 30.68 0.16 -5.43 16 12 C -0.12 -3.78 6.03 30.71 0.19 -3.59 16 13 C -0.13 -4.28 5.40 30.68 0.17 -4.12 16 14 C 0.11 4.64 2.85 29.87 0.09 4.72 16 15 H 0.04 1.51 8.00 -2.38 -0.02 1.49 16 16 C -0.05 -1.88 4.97 -19.87 -0.10 -1.98 16 17 C -0.11 -3.90 9.36 22.27 0.21 -3.69 16 18 C -0.09 -2.35 10.04 22.26 0.22 -2.12 16 19 C -0.15 -3.88 10.03 22.31 0.22 -3.66 16 20 C 0.08 2.43 7.30 22.38 0.16 2.59 16 21 F -0.15 -4.21 17.27 44.97 0.78 -3.44 16 22 C -0.16 -5.18 9.65 22.31 0.22 -4.96 16 23 O -0.37 -19.23 8.74 -148.98 -1.30 -20.53 16 24 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 25 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.12 4.43 7.77 -2.91 -0.02 4.41 16 32 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 33 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 34 H 0.14 4.15 8.04 -2.91 -0.02 4.13 16 Total: -1.00 -65.12 290.35 5.15 -59.97 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.08 Total: 11.63 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 2.29 Total: -39.77 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.28 Total: -53.76 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -1.30 Total: -20.53 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.44 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -65.12 5.15 -59.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309458375.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.050 kcal (2) G-P(sol) polarization free energy of solvation -65.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds