Wall clock time and date at job start Mon Mar 30 2020 06:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00017 * 2 1 4 4 H 1.48505 * 109.47366 * 270.00426 * 3 2 1 5 5 H 1.48500 * 109.47258 * 30.00117 * 3 2 1 6 6 H 1.48495 * 109.47231 * 150.00255 * 3 2 1 7 7 C 1.37874 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00371 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99942 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.47829 * 300.02206 * 9 7 2 11 11 C 1.53092 * 109.48206 * 179.97438 * 9 7 2 12 12 C 1.53182 * 109.16437 * 297.62735 * 11 9 7 13 13 C 1.53176 * 109.03519 * 303.01903 * 12 11 9 14 14 C 1.53095 * 109.16322 * 56.98156 * 13 12 11 15 15 H 1.08998 * 109.48304 * 62.38244 * 14 13 12 16 16 C 1.50699 * 109.47997 * 182.41093 * 14 13 12 17 17 C 1.38270 * 119.99120 * 85.01916 * 16 14 13 18 18 C 1.38221 * 120.05301 * 180.02562 * 17 16 14 19 19 C 1.38217 * 120.02394 * 359.70258 * 18 17 16 20 20 C 1.38442 * 119.97538 * 0.52749 * 19 18 17 21 21 F 1.35104 * 120.02527 * 179.76861 * 20 19 18 22 22 C 1.38176 * 119.98426 * 264.99882 * 16 14 13 23 23 O 1.42903 * 109.48118 * 60.05686 * 9 7 2 24 24 H 0.96999 * 120.00083 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.52806 * 177.72127 * 11 9 7 26 26 H 1.09006 * 109.57589 * 57.55917 * 11 9 7 27 27 H 1.08998 * 109.54418 * 183.14903 * 12 11 9 28 28 H 1.09000 * 109.61354 * 62.92812 * 12 11 9 29 29 H 1.09000 * 109.52360 * 297.07272 * 13 12 11 30 30 H 1.09006 * 109.57185 * 176.91617 * 13 12 11 31 31 H 1.08001 * 119.96959 * 0.02562 * 17 16 14 32 32 H 1.07993 * 119.98770 * 179.97438 * 18 17 16 33 33 H 1.08007 * 120.01392 * 180.27288 * 19 18 17 34 34 H 1.07996 * 120.01615 * 359.97438 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8747 -0.6797 -0.8908 11 6 4.0222 -2.6373 -0.0010 12 6 3.5578 -3.3349 1.2813 13 6 4.0590 -2.5409 2.4915 14 6 3.5470 -1.1013 2.3952 15 1 2.4574 -1.1001 2.4271 16 6 4.0846 -0.2982 3.5514 17 6 5.3367 0.2823 3.4668 18 6 5.8313 1.0188 4.5268 19 6 5.0720 1.1808 5.6704 20 6 3.8202 0.5960 5.7581 21 9 3.0792 0.7498 6.8773 22 6 3.3259 -0.1419 4.6957 23 8 3.9886 -0.5218 1.1662 24 1 -0.4850 0.8400 0.0004 25 1 5.1113 -2.6385 -0.0423 26 1 3.6242 -3.1656 -0.8675 27 1 3.9646 -4.3456 1.3144 28 1 2.4689 -3.3793 1.2999 29 1 5.1489 -2.5400 2.5006 30 1 3.6874 -2.9990 3.4082 31 1 5.9286 0.1603 2.5718 32 1 6.8095 1.4714 4.4598 33 1 5.4569 1.7599 6.4968 34 1 2.3477 -0.5948 4.7613 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309458376.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:35 Heat of formation + Delta-G solvation = -74.903235 kcal Electronic energy + Delta-G solvation = -18648.458357 eV Core-core repulsion = 15653.321332 eV Total energy + Delta-G solvation = -2995.137024 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.70068 -39.39417 -37.83473 -32.88929 -32.70054 -31.86078 -30.31868 -28.99419 -25.93740 -23.94744 -22.53695 -22.15966 -20.98207 -18.90608 -17.38900 -16.65887 -15.98203 -15.87247 -15.40895 -15.25022 -14.54180 -14.30389 -13.88908 -13.70763 -13.38172 -12.87691 -12.65122 -12.42292 -12.12824 -11.87041 -11.80658 -11.40237 -11.01007 -10.77954 -10.45113 -10.34882 -10.03109 -9.88450 -9.74760 -8.90613 -8.71211 -8.64506 -8.44614 -7.92330 -6.14076 -4.23012 1.40430 1.42465 3.36672 3.46971 3.70026 3.81638 4.34485 4.51142 4.73640 5.03836 5.09547 5.26859 5.38671 5.49135 5.55255 5.65928 5.69882 5.80956 6.01869 6.09378 6.18198 6.27495 6.32275 6.35349 6.46371 6.58984 6.63663 6.75469 6.81197 6.89696 7.02802 7.13483 7.28492 7.60930 8.17475 8.61294 8.88621 9.50532 10.96170 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.020531 B = 0.008798 C = 0.007602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.461411 B = 3181.775085 C = 3682.550561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.085 3.915 3 Si 0.858 3.142 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.216 1.216 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.175 3.825 10 H 0.062 0.938 11 C -0.131 4.131 12 C -0.110 4.110 13 C -0.132 4.132 14 C 0.133 3.867 15 H 0.085 0.915 16 C -0.034 4.034 17 C -0.106 4.106 18 C -0.099 4.099 19 C -0.165 4.165 20 C 0.091 3.909 21 F -0.145 7.145 22 C -0.147 4.147 23 O -0.386 6.386 24 H 0.264 0.736 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.570 -0.852 8.284 13.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.120 4.120 3 Si 0.684 3.316 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.138 1.138 7 C -0.589 4.589 8 H 0.094 0.906 9 C 0.119 3.881 10 H 0.079 0.921 11 C -0.169 4.169 12 C -0.148 4.148 13 C -0.170 4.170 14 C 0.075 3.925 15 H 0.103 0.897 16 C -0.035 4.035 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.184 4.184 20 C 0.072 3.928 21 F -0.124 7.124 22 C -0.166 4.166 23 O -0.307 6.307 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.513 -0.591 8.322 13.421 hybrid contribution -0.162 0.748 0.128 0.776 sum 10.351 0.157 8.450 13.363 Atomic orbital electron populations 1.69948 1.06679 1.27387 1.48780 1.24989 0.94558 0.99697 0.92716 0.87192 0.83373 0.82505 0.78489 1.21225 1.22114 1.13830 1.21416 0.89532 0.94676 1.53231 0.90641 1.20158 0.94700 0.88705 0.84510 0.92061 1.21969 0.98517 0.98899 0.97505 1.21462 1.02084 0.96778 0.94455 1.22047 1.00360 0.96152 0.98454 1.20513 0.99360 0.89460 0.83212 0.89703 1.19876 0.93560 0.96010 0.94010 1.21167 0.95794 0.96875 0.98571 1.20991 0.99577 0.98464 0.92665 1.21034 0.93984 1.03186 1.00178 1.17615 0.90821 1.00765 0.83624 1.91469 1.76521 1.94306 1.50086 1.21010 1.01445 1.01185 0.92957 1.88025 1.74466 1.54948 1.13225 0.92610 0.93784 0.92002 0.93580 0.90699 0.92385 0.92296 0.84800 0.85401 0.85343 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 2 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 3 Si 0.86 21.38 26.99 -169.99 -4.59 16.79 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.22 -5.19 5.31 56.52 0.30 -4.89 16 7 C -0.55 -14.62 7.17 -34.44 -0.25 -14.86 16 8 H 0.08 2.16 7.12 -52.49 -0.37 1.79 16 9 C 0.17 3.94 2.65 -27.83 -0.07 3.87 16 10 H 0.06 1.40 7.57 -51.93 -0.39 1.00 16 11 C -0.13 -2.50 5.59 -26.59 -0.15 -2.64 16 12 C -0.11 -1.96 5.77 -26.55 -0.15 -2.12 16 13 C -0.13 -2.26 5.40 -26.59 -0.14 -2.40 16 14 C 0.13 2.62 2.58 -27.83 -0.07 2.55 16 15 H 0.09 1.93 7.00 -51.93 -0.36 1.56 16 16 C -0.03 -0.61 5.01 -104.63 -0.52 -1.13 16 17 C -0.11 -1.69 9.35 -39.58 -0.37 -2.06 16 18 C -0.10 -1.33 10.04 -39.60 -0.40 -1.72 16 19 C -0.16 -2.25 10.03 -39.51 -0.40 -2.64 16 20 C 0.09 1.42 7.30 -39.42 -0.29 1.13 16 21 F -0.15 -2.26 17.27 2.25 0.04 -2.22 16 22 C -0.15 -2.47 9.66 -39.51 -0.38 -2.85 16 23 O -0.39 -8.45 6.19 -35.23 -0.22 -8.67 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.48 6.86 -51.93 -0.36 1.13 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.13 2.09 7.62 -52.49 -0.40 1.69 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 34 H 0.14 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 279.32 15.07 4.21 4.21 Total: -1.00 -29.10 279.32 -7.58 -36.68 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.50 Total: 1.66 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -3.29 Total: -22.61 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.77 Total: -25.83 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.22 Total: -8.67 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.59 Total: 16.79 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.10 -7.58 -36.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309458376.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.222 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds