Wall clock time and date at job start Mon Mar 30 2020 06:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00017 * 2 1 4 4 H 1.48505 * 109.47366 * 270.00426 * 3 2 1 5 5 H 1.48500 * 109.47258 * 30.00117 * 3 2 1 6 6 H 1.48495 * 109.47231 * 150.00255 * 3 2 1 7 7 C 1.37874 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00371 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99942 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.47829 * 300.02206 * 9 7 2 11 11 C 1.53092 * 109.48206 * 179.97438 * 9 7 2 12 12 C 1.53182 * 109.16437 * 297.62735 * 11 9 7 13 13 C 1.53176 * 109.03519 * 303.01903 * 12 11 9 14 14 C 1.53095 * 109.16322 * 56.98156 * 13 12 11 15 15 H 1.08998 * 109.48304 * 62.38244 * 14 13 12 16 16 C 1.50699 * 109.47997 * 182.41093 * 14 13 12 17 17 C 1.38270 * 119.99120 * 85.01916 * 16 14 13 18 18 C 1.38221 * 120.05301 * 180.02562 * 17 16 14 19 19 C 1.38217 * 120.02394 * 359.70258 * 18 17 16 20 20 C 1.38442 * 119.97538 * 0.52749 * 19 18 17 21 21 F 1.35104 * 120.02527 * 179.76861 * 20 19 18 22 22 C 1.38176 * 119.98426 * 264.99882 * 16 14 13 23 23 O 1.42903 * 109.48118 * 60.05686 * 9 7 2 24 24 H 0.96999 * 120.00083 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.52806 * 177.72127 * 11 9 7 26 26 H 1.09006 * 109.57589 * 57.55917 * 11 9 7 27 27 H 1.08998 * 109.54418 * 183.14903 * 12 11 9 28 28 H 1.09000 * 109.61354 * 62.92812 * 12 11 9 29 29 H 1.09000 * 109.52360 * 297.07272 * 13 12 11 30 30 H 1.09006 * 109.57185 * 176.91617 * 13 12 11 31 31 H 1.08001 * 119.96959 * 0.02562 * 17 16 14 32 32 H 1.07993 * 119.98770 * 179.97438 * 18 17 16 33 33 H 1.08007 * 120.01392 * 180.27288 * 19 18 17 34 34 H 1.07996 * 120.01615 * 359.97438 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8747 -0.6797 -0.8908 11 6 4.0222 -2.6373 -0.0010 12 6 3.5578 -3.3349 1.2813 13 6 4.0590 -2.5409 2.4915 14 6 3.5470 -1.1013 2.3952 15 1 2.4574 -1.1001 2.4271 16 6 4.0846 -0.2982 3.5514 17 6 5.3367 0.2823 3.4668 18 6 5.8313 1.0188 4.5268 19 6 5.0720 1.1808 5.6704 20 6 3.8202 0.5960 5.7581 21 9 3.0792 0.7498 6.8773 22 6 3.3259 -0.1419 4.6957 23 8 3.9886 -0.5218 1.1662 24 1 -0.4850 0.8400 0.0004 25 1 5.1113 -2.6385 -0.0423 26 1 3.6242 -3.1656 -0.8675 27 1 3.9646 -4.3456 1.3144 28 1 2.4689 -3.3793 1.2999 29 1 5.1489 -2.5400 2.5006 30 1 3.6874 -2.9990 3.4082 31 1 5.9286 0.1603 2.5718 32 1 6.8095 1.4714 4.4598 33 1 5.4569 1.7599 6.4968 34 1 2.3477 -0.5948 4.7613 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309458376.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:35 Heat of formation + Delta-G solvation = -90.718822 kcal Electronic energy + Delta-G solvation = -18649.144172 eV Core-core repulsion = 15653.321332 eV Total energy + Delta-G solvation = -2995.822840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.90341 -40.82019 -39.25158 -34.77285 -34.27114 -33.49366 -31.54285 -30.45435 -27.78875 -25.41501 -23.95698 -23.57571 -22.33157 -20.62984 -18.95905 -18.25450 -17.35311 -17.05666 -16.91886 -16.60363 -16.24887 -15.91645 -15.51317 -15.21412 -14.63309 -14.50999 -14.12602 -14.04063 -13.62725 -13.48366 -13.07802 -12.80484 -12.60537 -12.43582 -12.13475 -11.93278 -11.75733 -11.56455 -11.34877 -10.80001 -10.65846 -10.06820 -9.75277 -9.48116 -8.32674 -6.42660 0.21258 0.24778 1.35570 1.41946 1.69266 2.42134 2.61559 2.92907 3.15777 3.47808 3.82640 3.92041 4.11745 4.14123 4.21584 4.32471 4.39518 4.44994 4.52248 4.68535 4.85928 4.91882 4.99021 5.10253 5.15235 5.18768 5.26147 5.29549 5.36988 5.42107 5.52003 5.65446 5.71395 5.96879 6.11668 6.67141 6.81378 7.33731 8.81281 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.020531 B = 0.008798 C = 0.007602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.461411 B = 3181.775085 C = 3682.550561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.031 3.969 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.305 1.305 6 H -0.199 1.199 7 C -0.540 4.540 8 H 0.040 0.960 9 C 0.172 3.828 10 H 0.064 0.936 11 C -0.128 4.128 12 C -0.110 4.110 13 C -0.125 4.125 14 C 0.133 3.867 15 H 0.041 0.959 16 C -0.056 4.056 17 C -0.113 4.113 18 C -0.085 4.085 19 C -0.153 4.153 20 C 0.079 3.921 21 F -0.148 7.148 22 C -0.165 4.165 23 O -0.389 6.389 24 H 0.263 0.737 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.139 0.861 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.116 -0.190 9.332 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.169 4.169 3 Si 0.740 3.260 4 H -0.206 1.206 5 H -0.233 1.233 6 H -0.120 1.120 7 C -0.577 4.577 8 H 0.058 0.942 9 C 0.116 3.884 10 H 0.082 0.918 11 C -0.165 4.165 12 C -0.147 4.147 13 C -0.163 4.163 14 C 0.075 3.925 15 H 0.059 0.941 16 C -0.056 4.056 17 C -0.131 4.131 18 C -0.102 4.102 19 C -0.171 4.171 20 C 0.060 3.940 21 F -0.127 7.127 22 C -0.184 4.184 23 O -0.309 6.309 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.157 0.843 32 H 0.187 0.813 33 H 0.179 0.821 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 14.078 0.053 9.370 16.911 hybrid contribution -1.277 0.480 -0.134 1.371 sum 12.801 0.533 9.236 15.794 Atomic orbital electron populations 1.70081 1.08371 1.27934 1.51681 1.25754 0.95085 1.03063 0.92956 0.86315 0.82619 0.78454 0.78632 1.20586 1.23266 1.12018 1.21682 0.92024 0.92963 1.51048 0.94158 1.20114 0.91809 0.91385 0.85047 0.91850 1.21920 1.00173 0.96352 0.98081 1.21449 1.00176 0.98692 0.94400 1.21999 1.01485 0.94176 0.98621 1.20481 0.97060 0.91790 0.83186 0.94143 1.19719 0.94958 0.97556 0.93413 1.21314 0.94966 0.97089 0.99729 1.21397 1.00840 0.96785 0.91207 1.21443 0.92616 1.01909 1.01179 1.17789 0.91803 1.01154 0.83221 1.91461 1.76832 1.94336 1.50082 1.21004 1.01345 1.02269 0.93743 1.87944 1.73912 1.55473 1.13610 0.92839 0.90827 0.92112 0.90328 0.94009 0.90209 0.91032 0.84349 0.81330 0.82061 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.76 13.96 21.45 0.30 -58.46 16 2 C 0.03 1.76 5.47 84.65 0.46 2.23 16 3 Si 0.92 44.85 26.99 68.60 1.85 46.70 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.31 -15.39 7.11 99.48 0.71 -14.68 16 6 H -0.20 -9.09 5.31 99.48 0.53 -8.56 16 7 C -0.54 -29.54 7.17 25.60 0.18 -29.36 16 8 H 0.04 2.44 7.12 -2.91 -0.02 2.42 16 9 C 0.17 7.68 2.65 29.88 0.08 7.76 16 10 H 0.06 2.80 7.57 -2.39 -0.02 2.78 16 11 C -0.13 -4.65 5.59 30.69 0.17 -4.48 16 12 C -0.11 -3.79 5.77 30.71 0.18 -3.61 16 13 C -0.13 -4.09 5.40 30.68 0.17 -3.92 16 14 C 0.13 5.22 2.58 29.88 0.08 5.30 16 15 H 0.04 1.93 7.00 -2.39 -0.02 1.92 16 16 C -0.06 -1.93 5.01 -19.87 -0.10 -2.03 16 17 C -0.11 -3.23 9.35 22.27 0.21 -3.03 16 18 C -0.08 -1.87 10.04 22.26 0.22 -1.65 16 19 C -0.15 -3.55 10.03 22.31 0.22 -3.33 16 20 C 0.08 2.33 7.30 22.38 0.16 2.49 16 21 F -0.15 -4.43 17.27 44.97 0.78 -3.65 16 22 C -0.16 -5.49 9.66 22.31 0.22 -5.27 16 23 O -0.39 -16.55 6.19 -148.98 -0.92 -17.47 16 24 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 25 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.04 1.70 6.86 -2.39 -0.02 1.68 16 29 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.14 3.82 7.62 -2.91 -0.02 3.80 16 32 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 33 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -65.06 279.32 5.17 -59.89 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.91 Total: 11.89 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 2.25 Total: -38.90 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.30 Total: -58.46 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.92 Total: -17.47 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.78 Total: -3.65 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.85 Total: 46.70 kcal Total: -65.06 5.17 -59.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309458376.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.827 kcal (2) G-P(sol) polarization free energy of solvation -65.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds