Wall clock time and date at job start Mon Mar 30 2020 06:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38262 * 119.97671 * 2 1 4 4 C 1.38177 * 120.02678 * 180.02562 * 3 2 1 5 5 C 1.38481 * 119.97388 * 359.97438 * 4 3 2 6 6 F 1.35104 * 120.02717 * 180.02562 * 5 4 3 7 7 C 1.38437 * 119.95061 * 0.27736 * 5 4 3 8 8 C 1.38228 * 119.97183 * 359.44441 * 7 5 4 9 9 C 1.50695 * 119.98863 * 180.30135 * 8 7 5 10 10 H 1.09006 * 109.82259 * 215.95925 * 9 8 7 11 11 C 1.54382 * 109.83309 * 95.07162 * 9 8 7 12 12 C 1.55446 * 102.18432 * 219.18005 * 11 9 8 13 13 C 1.54943 * 100.99052 * 34.04332 * 12 11 9 14 14 H 1.09000 * 110.31337 * 82.51986 * 13 12 11 15 15 C 1.50706 * 110.39000 * 204.64591 * 13 12 11 16 16 H 1.07995 * 120.00030 * 357.21560 * 15 13 12 17 17 C 1.37883 * 119.99869 * 177.21118 * 15 13 12 18 18 N 1.31520 * 119.99767 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00089 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47194 * 59.99935 * 19 17 15 21 21 H 1.48495 * 109.47061 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46997 * 300.00173 * 19 17 15 23 23 O 1.43241 * 109.82952 * 336.84315 * 9 8 7 24 24 H 1.08999 * 109.46882 * 90.00203 * 1 2 3 25 25 H 1.09003 * 109.47534 * 210.00426 * 1 2 3 26 26 H 1.09006 * 109.46890 * 330.00706 * 1 2 3 27 27 H 1.08001 * 119.98726 * 0.03227 * 3 2 1 28 28 H 1.07996 * 120.01639 * 180.02562 * 4 3 2 29 29 H 1.08002 * 120.01812 * 179.70864 * 7 5 4 30 30 H 1.08991 * 110.84651 * 337.32237 * 11 9 8 31 31 H 1.08999 * 110.84616 * 100.93607 * 11 9 8 32 32 H 1.08996 * 111.06048 * 276.12189 * 12 11 9 33 33 H 1.09003 * 111.14641 * 151.99472 * 12 11 9 34 34 H 0.96999 * 119.99396 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1989 -0.0005 5 6 4.2725 -0.0001 -0.0005 6 9 5.6235 -0.0002 -0.0005 7 6 3.5797 -1.1987 -0.0058 8 6 2.1975 -1.1975 0.0006 9 6 1.4431 -2.5020 0.0017 10 1 0.5367 -2.4054 -0.5962 11 6 1.0764 -2.8937 1.4492 12 6 1.3007 -4.4319 1.4397 13 6 2.4984 -4.5497 0.4638 14 1 3.4343 -4.3574 0.9885 15 6 2.5266 -5.9166 -0.1703 16 1 1.7989 -6.6607 0.1180 17 6 3.4813 -6.2171 -1.1186 18 7 4.3678 -5.3110 -1.4693 19 14 3.5167 -7.9115 -1.9041 20 1 2.2289 -8.1615 -2.5999 21 1 4.6306 -7.9798 -2.8837 22 1 3.7191 -8.9404 -0.8526 23 8 2.2699 -3.5419 -0.5339 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6572 2.1326 0.0005 28 1 4.1190 2.1345 -0.0001 29 1 4.1191 -2.1344 -0.0106 30 1 1.7427 -2.4092 2.1628 31 1 0.0352 -2.6534 1.6642 32 1 0.4253 -4.9530 1.0520 33 1 1.5652 -4.7969 2.4321 34 1 5.0392 -5.5223 -2.1367 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309469741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:50 Heat of formation + Delta-G solvation = -78.271483 kcal Electronic energy + Delta-G solvation = -18349.207907 eV Core-core repulsion = 15353.924824 eV Total energy + Delta-G solvation = -2995.283082 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.46942 -39.54682 -37.53703 -32.91969 -32.29868 -31.11112 -30.87836 -28.05361 -26.34614 -24.77586 -22.45672 -21.32336 -20.40161 -20.00138 -17.12637 -16.56594 -16.23443 -15.20519 -15.11221 -15.01042 -14.76109 -14.17782 -13.80054 -13.44410 -13.29870 -13.10342 -12.45852 -12.22896 -11.90717 -11.73961 -11.60952 -11.34948 -11.04840 -10.89862 -10.61579 -10.47236 -10.40988 -10.23768 -9.83201 -9.14515 -8.61945 -8.54017 -8.15760 -7.92897 -6.01860 -4.15053 1.45314 1.59100 3.32103 3.37265 3.38943 3.86722 4.41752 4.61132 4.90061 4.95984 5.11255 5.26557 5.35855 5.43165 5.46029 5.52877 5.66015 5.74787 5.89649 6.00780 6.06222 6.15281 6.24303 6.38429 6.46756 6.53147 6.55976 6.57481 6.70633 6.80268 7.02920 7.29586 7.54140 7.87597 8.22697 8.56827 8.99499 9.56026 11.05633 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.024715 B = 0.006957 C = 0.005876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.653074 B = 4023.649011 C = 4763.951917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 C -0.102 4.102 4 C -0.163 4.163 5 C 0.086 3.914 6 F -0.144 7.144 7 C -0.118 4.118 8 C -0.055 4.055 9 C 0.108 3.892 10 H 0.074 0.926 11 C -0.145 4.145 12 C -0.147 4.147 13 C 0.209 3.791 14 H 0.027 0.973 15 C -0.537 4.537 16 H 0.063 0.937 17 C 0.079 3.921 18 N -0.862 5.862 19 Si 0.892 3.108 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 O -0.347 6.347 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.152 0.848 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.811 11.222 4.222 13.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.100 4.100 3 C -0.120 4.120 4 C -0.182 4.182 5 C 0.067 3.933 6 F -0.123 7.123 7 C -0.137 4.137 8 C -0.055 4.055 9 C 0.049 3.951 10 H 0.092 0.908 11 C -0.183 4.183 12 C -0.185 4.185 13 C 0.154 3.846 14 H 0.045 0.955 15 C -0.574 4.574 16 H 0.081 0.919 17 C -0.128 4.128 18 N -0.497 5.497 19 Si 0.719 3.281 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 O -0.266 6.266 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.169 0.831 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.506 11.252 3.904 13.121 hybrid contribution 0.353 -0.733 -0.341 0.882 sum -5.153 10.519 3.564 12.243 Atomic orbital electron populations 1.20810 0.91188 1.02692 1.02377 1.19743 0.96229 0.92370 1.01629 1.20705 0.92956 0.97478 1.00823 1.20986 0.94964 0.96651 1.05614 1.17769 0.76781 0.94679 1.04090 1.91472 1.29295 1.97455 1.94080 1.21288 0.94804 0.97909 0.99672 1.20268 0.93258 0.95433 0.96556 1.21462 0.93059 0.86506 0.94091 0.90832 1.23120 1.00800 0.97952 0.96400 1.23371 1.01338 0.93096 1.00671 1.20560 0.91318 0.87482 0.85212 0.95504 1.21051 1.15402 0.95881 1.25109 0.91909 1.25069 0.94878 0.96794 0.96015 1.70008 1.16067 1.33332 1.30326 0.86680 0.77731 0.84439 0.79228 1.20096 1.21182 1.20126 1.88908 1.68174 1.31163 1.38346 0.91167 0.91077 0.91818 0.85655 0.85490 0.83071 0.91529 0.91471 0.91409 0.91802 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.23 36.00 0.33 -1.00 16 2 C -0.10 -1.48 5.88 -104.62 -0.62 -2.10 16 3 C -0.10 -1.37 9.70 -39.59 -0.38 -1.75 16 4 C -0.16 -2.39 10.03 -39.51 -0.40 -2.79 16 5 C 0.09 1.53 7.30 -39.42 -0.29 1.24 16 6 F -0.14 -2.66 17.27 2.25 0.04 -2.62 16 7 C -0.12 -2.35 9.34 -39.51 -0.37 -2.72 16 8 C -0.05 -1.00 4.93 -104.63 -0.52 -1.51 16 9 C 0.11 2.12 3.00 -27.16 -0.08 2.04 16 10 H 0.07 1.35 7.05 -51.93 -0.37 0.99 16 11 C -0.15 -2.50 6.12 -24.71 -0.15 -2.65 16 12 C -0.15 -2.95 6.54 -24.41 -0.16 -3.11 16 13 C 0.21 5.29 3.27 -26.85 -0.09 5.20 16 14 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 15 C -0.54 -14.90 8.81 -34.44 -0.30 -15.20 16 16 H 0.06 1.68 7.77 -52.49 -0.41 1.27 16 17 C 0.08 2.22 5.42 -17.82 -0.10 2.12 16 18 N -0.86 -25.47 12.93 55.43 0.72 -24.75 16 19 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 O -0.35 -8.79 9.03 -35.23 -0.32 -9.11 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.83 5.76 -51.93 -0.30 0.53 16 26 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 28 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.15 3.49 7.32 -52.49 -0.38 3.11 16 30 H 0.07 1.12 7.84 -51.93 -0.41 0.72 16 31 H 0.07 0.96 7.46 -51.93 -0.39 0.57 16 32 H 0.07 1.34 8.05 -51.93 -0.42 0.92 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 287.84 15.07 4.34 4.34 Total: -1.00 -30.20 287.84 -7.70 -37.90 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.34 Total: 0.16 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -3.12 Total: -22.23 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.72 Total: -24.75 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.32 Total: -9.11 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.20 -7.70 -37.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309469741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.368 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds