Wall clock time and date at job start Mon Mar 30 2020 06:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38262 * 119.97671 * 2 1 4 4 C 1.38177 * 120.02678 * 180.02562 * 3 2 1 5 5 C 1.38481 * 119.97388 * 359.97438 * 4 3 2 6 6 F 1.35104 * 120.02717 * 180.02562 * 5 4 3 7 7 C 1.38437 * 119.95061 * 0.27736 * 5 4 3 8 8 C 1.38228 * 119.97183 * 359.44441 * 7 5 4 9 9 C 1.50695 * 119.98863 * 180.30135 * 8 7 5 10 10 H 1.09006 * 109.82259 * 215.95925 * 9 8 7 11 11 C 1.54382 * 109.83309 * 95.07162 * 9 8 7 12 12 C 1.55446 * 102.18432 * 219.18005 * 11 9 8 13 13 C 1.54943 * 100.99052 * 34.04332 * 12 11 9 14 14 H 1.09000 * 110.31337 * 82.51986 * 13 12 11 15 15 C 1.50706 * 110.39000 * 204.64591 * 13 12 11 16 16 H 1.07995 * 120.00030 * 357.21560 * 15 13 12 17 17 C 1.37883 * 119.99869 * 177.21118 * 15 13 12 18 18 N 1.31520 * 119.99767 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00089 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47194 * 59.99935 * 19 17 15 21 21 H 1.48495 * 109.47061 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46997 * 300.00173 * 19 17 15 23 23 O 1.43241 * 109.82952 * 336.84315 * 9 8 7 24 24 H 1.08999 * 109.46882 * 90.00203 * 1 2 3 25 25 H 1.09003 * 109.47534 * 210.00426 * 1 2 3 26 26 H 1.09006 * 109.46890 * 330.00706 * 1 2 3 27 27 H 1.08001 * 119.98726 * 0.03227 * 3 2 1 28 28 H 1.07996 * 120.01639 * 180.02562 * 4 3 2 29 29 H 1.08002 * 120.01812 * 179.70864 * 7 5 4 30 30 H 1.08991 * 110.84651 * 337.32237 * 11 9 8 31 31 H 1.08999 * 110.84616 * 100.93607 * 11 9 8 32 32 H 1.08996 * 111.06048 * 276.12189 * 12 11 9 33 33 H 1.09003 * 111.14641 * 151.99472 * 12 11 9 34 34 H 0.96999 * 119.99396 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1989 -0.0005 5 6 4.2725 -0.0001 -0.0005 6 9 5.6235 -0.0002 -0.0005 7 6 3.5797 -1.1987 -0.0058 8 6 2.1975 -1.1975 0.0006 9 6 1.4431 -2.5020 0.0017 10 1 0.5367 -2.4054 -0.5962 11 6 1.0764 -2.8937 1.4492 12 6 1.3007 -4.4319 1.4397 13 6 2.4984 -4.5497 0.4638 14 1 3.4343 -4.3574 0.9885 15 6 2.5266 -5.9166 -0.1703 16 1 1.7989 -6.6607 0.1180 17 6 3.4813 -6.2171 -1.1186 18 7 4.3678 -5.3110 -1.4693 19 14 3.5167 -7.9115 -1.9041 20 1 2.2289 -8.1615 -2.5999 21 1 4.6306 -7.9798 -2.8837 22 1 3.7191 -8.9404 -0.8526 23 8 2.2699 -3.5419 -0.5339 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6572 2.1326 0.0005 28 1 4.1190 2.1345 -0.0001 29 1 4.1191 -2.1344 -0.0106 30 1 1.7427 -2.4092 2.1628 31 1 0.0352 -2.6534 1.6642 32 1 0.4253 -4.9530 1.0520 33 1 1.5652 -4.7969 2.4321 34 1 5.0392 -5.5223 -2.1367 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309469741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:49 Heat of formation + Delta-G solvation = -95.717889 kcal Electronic energy + Delta-G solvation = -18349.964440 eV Core-core repulsion = 15353.924824 eV Total energy + Delta-G solvation = -2996.039615 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.88195 -40.96503 -39.09461 -34.84645 -33.68138 -32.56290 -32.50320 -29.76365 -27.51994 -26.55707 -23.97263 -22.63221 -22.15130 -21.46285 -18.77791 -18.32501 -17.69713 -16.74592 -16.62314 -16.59421 -16.32198 -15.86892 -15.26672 -14.71349 -14.57016 -14.42492 -14.15761 -13.79602 -13.61393 -12.98397 -12.83452 -12.75932 -12.59067 -12.43051 -12.39065 -12.22827 -12.03998 -11.80903 -11.47225 -11.03093 -10.71811 -10.05613 -9.72910 -9.35071 -8.15850 -6.37408 0.18502 0.30915 1.39137 1.42291 1.49995 2.39574 2.59158 3.05796 3.30387 3.62094 3.72372 3.86372 3.95490 4.09990 4.14206 4.20279 4.38772 4.51512 4.63271 4.78699 4.85632 4.89509 4.92325 4.97770 5.08010 5.09575 5.14442 5.25575 5.36245 5.43358 5.53959 5.70641 5.75628 6.01811 6.16104 6.58010 7.02849 7.39358 8.91568 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.024715 B = 0.006957 C = 0.005876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.653074 B = 4023.649011 C = 4763.951917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.086 4.086 4 C -0.149 4.149 5 C 0.061 3.939 6 F -0.157 7.157 7 C -0.151 4.151 8 C -0.074 4.074 9 C 0.098 3.902 10 H 0.089 0.911 11 C -0.129 4.129 12 C -0.139 4.139 13 C 0.202 3.798 14 H -0.016 1.016 15 C -0.557 4.557 16 H 0.069 0.931 17 C 0.021 3.979 18 N -0.903 5.903 19 Si 0.963 3.037 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.263 1.263 23 O -0.385 6.385 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.176 0.824 28 H 0.161 0.839 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.629 13.168 4.641 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.104 4.104 4 C -0.168 4.168 5 C 0.042 3.958 6 F -0.136 7.136 7 C -0.170 4.170 8 C -0.075 4.075 9 C 0.040 3.960 10 H 0.106 0.894 11 C -0.166 4.166 12 C -0.177 4.177 13 C 0.147 3.853 14 H 0.002 0.998 15 C -0.595 4.595 16 H 0.087 0.913 17 C -0.181 4.181 18 N -0.540 5.540 19 Si 0.787 3.213 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.188 1.188 23 O -0.304 6.304 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.193 0.807 28 H 0.178 0.822 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.128 0.872 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.342 13.195 4.339 16.203 hybrid contribution 1.202 -1.233 -0.453 1.781 sum -7.139 11.962 3.886 14.462 Atomic orbital electron populations 1.20925 0.88242 1.04431 1.03488 1.20152 0.98254 0.91280 0.99424 1.21277 0.92391 0.98809 0.97903 1.21389 0.95833 0.96208 1.03361 1.18027 0.76456 0.95419 1.05894 1.91428 1.30238 1.97540 1.94385 1.21000 0.95994 0.96784 1.03263 1.20229 0.92392 0.96384 0.98471 1.21758 0.92844 0.85836 0.95598 0.89362 1.23069 1.03298 0.95364 0.94865 1.23249 0.98999 0.95665 0.99788 1.20399 0.91893 0.86919 0.86093 0.99822 1.21542 1.15413 0.97446 1.25062 0.91287 1.26007 0.94480 1.00909 0.96746 1.70197 1.16999 1.35653 1.31163 0.85562 0.77838 0.79546 0.78368 1.19204 1.21148 1.18778 1.88796 1.69597 1.32799 1.39253 0.90204 0.91093 0.88410 0.80682 0.82168 0.88454 0.91535 0.87153 0.90801 0.90464 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.23 71.23 0.66 -1.46 16 2 C -0.09 -2.42 5.88 -19.86 -0.12 -2.54 16 3 C -0.09 -1.93 9.70 22.26 0.22 -1.71 16 4 C -0.15 -3.98 10.03 22.31 0.22 -3.76 16 5 C 0.06 2.24 7.30 22.38 0.16 2.40 16 6 F -0.16 -6.12 17.27 44.97 0.78 -5.34 16 7 C -0.15 -6.46 9.34 22.31 0.21 -6.25 16 8 C -0.07 -2.73 4.93 -19.87 -0.10 -2.83 16 9 C 0.10 3.86 3.00 30.32 0.09 3.95 16 10 H 0.09 3.14 7.05 -2.38 -0.02 3.13 16 11 C -0.13 -4.27 6.12 31.91 0.20 -4.08 16 12 C -0.14 -5.59 6.54 32.10 0.21 -5.38 16 13 C 0.20 10.81 3.27 30.51 0.10 10.91 16 14 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 15 C -0.56 -32.09 8.81 25.60 0.23 -31.87 16 16 H 0.07 3.76 7.77 -2.91 -0.02 3.73 16 17 C 0.02 1.20 5.42 84.66 0.46 1.66 16 18 N -0.90 -56.68 12.93 21.45 0.28 -56.40 16 19 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 23 O -0.38 -20.62 9.03 -148.98 -1.35 -21.97 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.34 5.76 -2.39 -0.01 1.32 16 26 H 0.10 1.20 8.09 -2.38 -0.02 1.18 16 27 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 28 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 29 H 0.10 5.13 7.32 -2.91 -0.02 5.11 16 30 H 0.07 2.20 7.84 -2.39 -0.02 2.18 16 31 H 0.11 2.72 7.46 -2.39 -0.02 2.70 16 32 H 0.07 2.85 8.05 -2.39 -0.02 2.83 16 33 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -72.20 287.84 5.36 -66.84 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.10 Total: 10.80 kcal Atomic # 6 Polarization: -43.49 SS G_CDS: 2.53 Total: -40.96 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.28 Total: -56.40 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -1.35 Total: -21.97 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.78 Total: -5.34 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -72.20 5.36 -66.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309469741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.881 kcal (2) G-P(sol) polarization free energy of solvation -72.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds