Wall clock time and date at job start Mon Mar 30 2020 06:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38271 * 119.97948 * 2 1 4 4 C 1.38177 * 120.02910 * 180.27612 * 3 2 1 5 5 C 1.38483 * 119.96926 * 359.74668 * 4 3 2 6 6 F 1.35105 * 120.02028 * 180.02562 * 5 4 3 7 7 C 1.38431 * 119.95332 * 0.02562 * 5 4 3 8 8 C 1.38215 * 119.97422 * 359.97438 * 7 5 4 9 9 C 1.50706 * 119.99196 * 179.97438 * 8 7 5 10 10 H 1.08994 * 109.82483 * 144.43606 * 9 8 7 11 11 C 1.54384 * 109.90716 * 265.37414 * 9 8 7 12 12 C 1.55303 * 102.25344 * 140.90805 * 11 9 8 13 13 C 1.54947 * 100.94245 * 325.86725 * 12 11 9 14 14 H 1.09002 * 110.38920 * 277.48393 * 13 12 11 15 15 C 1.50701 * 110.30964 * 155.36320 * 13 12 11 16 16 H 1.08002 * 119.99761 * 2.82493 * 15 13 12 17 17 C 1.37871 * 119.99694 * 183.11056 * 15 13 12 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47301 * 119.99669 * 19 17 15 22 22 H 1.48498 * 109.47430 * 239.99516 * 19 17 15 23 23 O 1.43238 * 109.82397 * 23.54889 * 9 8 7 24 24 H 1.09007 * 109.47200 * 270.23305 * 1 2 3 25 25 H 1.09003 * 109.46913 * 30.22690 * 1 2 3 26 26 H 1.08995 * 109.47782 * 150.22863 * 1 2 3 27 27 H 1.08001 * 119.98442 * 0.02562 * 3 2 1 28 28 H 1.07994 * 120.01362 * 179.72978 * 4 3 2 29 29 H 1.08001 * 120.01684 * 179.97438 * 7 5 4 30 30 H 1.09001 * 110.84442 * 259.10055 * 11 9 8 31 31 H 1.09001 * 110.84723 * 22.51027 * 11 9 8 32 32 H 1.08994 * 111.12172 * 207.94506 * 12 11 9 33 33 H 1.09002 * 111.12206 * 83.78645 * 12 11 9 34 34 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1989 -0.0058 5 6 4.2724 -0.0002 -0.0062 6 9 5.6235 -0.0002 -0.0114 7 6 3.5797 -1.1987 -0.0015 8 6 2.1976 -1.1974 0.0043 9 6 1.4430 -2.5019 0.0089 10 1 0.5384 -2.4036 0.6089 11 6 1.0724 -2.9000 -1.4360 12 6 1.2939 -4.4371 -1.4215 13 6 2.4953 -4.5520 -0.4498 14 1 3.4301 -4.3632 -0.9778 15 6 2.5228 -5.9168 0.1888 16 1 1.7930 -6.6605 -0.0950 17 6 3.4761 -6.2138 1.1395 18 7 4.3648 -5.3081 1.4851 19 14 3.5054 -7.9028 1.9368 20 1 2.4077 -8.7327 1.3788 21 1 4.8099 -8.5573 1.6625 22 1 3.3215 -7.7612 3.4036 23 8 2.2713 -3.5403 0.5450 24 1 -0.3634 0.0042 1.0277 25 1 -0.3633 0.8880 -0.5174 26 1 -0.3634 -0.8919 -0.5102 27 1 1.6572 2.1327 0.0004 28 1 4.1190 2.1345 -0.0102 29 1 4.1190 -2.1344 -0.0023 30 1 0.0308 -2.6600 -1.6494 31 1 1.7350 -2.4162 -2.1537 32 1 1.5542 -4.8058 -2.4136 33 1 0.4197 -4.9562 -1.0285 34 1 5.0352 -5.5169 2.1543 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309469743.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:51 Heat of formation + Delta-G solvation = -78.314105 kcal Electronic energy + Delta-G solvation = -18349.707315 eV Core-core repulsion = 15354.422385 eV Total energy + Delta-G solvation = -2995.284931 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.47076 -39.54965 -37.54242 -32.92185 -32.30028 -31.11313 -30.88532 -28.05495 -26.34806 -24.77842 -22.45817 -21.32381 -20.40464 -20.00541 -17.12762 -16.56835 -16.23725 -15.20612 -15.11474 -15.01311 -14.76476 -14.17105 -13.79574 -13.44849 -13.29990 -13.10572 -12.47251 -12.23249 -11.90759 -11.73665 -11.60885 -11.35351 -11.05084 -10.93773 -10.58395 -10.47671 -10.39692 -10.23475 -9.82470 -9.13842 -8.62593 -8.54537 -8.15719 -7.92932 -6.02185 -4.15204 1.45181 1.58971 3.29747 3.37906 3.40950 3.86577 4.41621 4.61000 4.90027 4.95889 5.11020 5.26500 5.35706 5.42960 5.46040 5.52706 5.65992 5.74676 5.89535 6.00691 6.06288 6.15216 6.24260 6.38449 6.46660 6.53015 6.55858 6.57326 6.70571 6.80198 7.02791 7.29382 7.54266 7.87674 8.22596 8.56823 8.99733 9.56054 11.05353 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.024717 B = 0.006956 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.541861 B = 4024.323420 C = 4762.802715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 C -0.101 4.101 4 C -0.163 4.163 5 C 0.086 3.914 6 F -0.144 7.144 7 C -0.118 4.118 8 C -0.054 4.054 9 C 0.108 3.892 10 H 0.074 0.926 11 C -0.145 4.145 12 C -0.147 4.147 13 C 0.208 3.792 14 H 0.028 0.972 15 C -0.536 4.536 16 H 0.064 0.936 17 C 0.078 3.922 18 N -0.861 5.861 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 O -0.347 6.347 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.151 0.849 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.837 11.219 -4.276 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.100 4.100 3 C -0.120 4.120 4 C -0.182 4.182 5 C 0.067 3.933 6 F -0.123 7.123 7 C -0.137 4.137 8 C -0.055 4.055 9 C 0.049 3.951 10 H 0.092 0.908 11 C -0.183 4.183 12 C -0.185 4.185 13 C 0.153 3.847 14 H 0.045 0.955 15 C -0.573 4.573 16 H 0.082 0.918 17 C -0.128 4.128 18 N -0.497 5.497 19 Si 0.718 3.282 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 O -0.266 6.266 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.169 0.831 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.540 11.246 -3.963 13.148 hybrid contribution 0.367 -0.718 0.361 0.883 sum -5.173 10.528 -3.603 12.271 Atomic orbital electron populations 1.20808 0.91186 1.02700 1.02372 1.19744 0.96229 0.92369 1.01636 1.20707 0.92957 0.97480 1.00808 1.20986 0.94964 0.96651 1.05618 1.17767 0.76781 0.94677 1.04079 1.91472 1.29296 1.97455 1.94078 1.21278 0.94802 0.97897 0.99699 1.20262 0.93255 0.95428 0.96542 1.21464 0.93034 0.86523 0.94095 0.90835 1.23097 1.00810 0.97936 0.96420 1.23342 1.01348 0.93088 1.00673 1.20576 0.91315 0.87443 0.85320 0.95483 1.21132 1.15297 0.96039 1.24844 0.91803 1.25069 0.94896 0.96762 0.96056 1.70023 1.16086 1.33241 1.30369 0.86571 0.77930 0.84270 0.79379 1.19649 1.20903 1.20862 1.88907 1.68092 1.31064 1.38524 0.91172 0.91813 0.91075 0.85653 0.85486 0.83098 0.91512 0.91530 0.91799 0.91386 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.23 36.00 0.33 -1.00 16 2 C -0.10 -1.48 5.88 -104.62 -0.62 -2.10 16 3 C -0.10 -1.36 9.70 -39.59 -0.38 -1.75 16 4 C -0.16 -2.39 10.03 -39.51 -0.40 -2.79 16 5 C 0.09 1.53 7.30 -39.42 -0.29 1.25 16 6 F -0.14 -2.66 17.27 2.25 0.04 -2.62 16 7 C -0.12 -2.35 9.34 -39.52 -0.37 -2.72 16 8 C -0.05 -0.99 4.94 -104.63 -0.52 -1.51 16 9 C 0.11 2.12 3.00 -27.15 -0.08 2.04 16 10 H 0.07 1.35 7.06 -51.93 -0.37 0.99 16 11 C -0.14 -2.50 6.11 -24.78 -0.15 -2.65 16 12 C -0.15 -2.94 6.53 -24.48 -0.16 -3.10 16 13 C 0.21 5.26 3.27 -26.85 -0.09 5.18 16 14 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 15 C -0.54 -14.85 8.81 -34.44 -0.30 -15.16 16 16 H 0.06 1.72 7.77 -52.49 -0.41 1.31 16 17 C 0.08 2.21 5.41 -17.82 -0.10 2.11 16 18 N -0.86 -25.45 12.93 55.43 0.72 -24.74 16 19 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 O -0.35 -8.79 9.03 -35.23 -0.32 -9.11 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.07 0.83 5.75 -51.93 -0.30 0.53 16 27 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 28 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.15 3.48 7.33 -52.49 -0.38 3.10 16 30 H 0.07 0.95 7.46 -51.93 -0.39 0.56 16 31 H 0.07 1.12 7.84 -51.93 -0.41 0.71 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 287.82 15.07 4.34 4.34 Total: -1.00 -30.25 287.82 -7.70 -37.95 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -4.34 Total: 0.07 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -3.12 Total: -22.20 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.72 Total: -24.74 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.32 Total: -9.11 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.25 -7.70 -37.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309469743.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.360 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds