Wall clock time and date at job start Mon Mar 30 2020 06:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38271 * 119.97948 * 2 1 4 4 C 1.38177 * 120.02910 * 180.27612 * 3 2 1 5 5 C 1.38483 * 119.96926 * 359.74668 * 4 3 2 6 6 F 1.35105 * 120.02028 * 180.02562 * 5 4 3 7 7 C 1.38431 * 119.95332 * 0.02562 * 5 4 3 8 8 C 1.38215 * 119.97422 * 359.97438 * 7 5 4 9 9 C 1.50706 * 119.99196 * 179.97438 * 8 7 5 10 10 H 1.08994 * 109.82483 * 144.43606 * 9 8 7 11 11 C 1.54384 * 109.90716 * 265.37414 * 9 8 7 12 12 C 1.55303 * 102.25344 * 140.90805 * 11 9 8 13 13 C 1.54947 * 100.94245 * 325.86725 * 12 11 9 14 14 H 1.09002 * 110.38920 * 277.48393 * 13 12 11 15 15 C 1.50701 * 110.30964 * 155.36320 * 13 12 11 16 16 H 1.08002 * 119.99761 * 2.82493 * 15 13 12 17 17 C 1.37871 * 119.99694 * 183.11056 * 15 13 12 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47301 * 119.99669 * 19 17 15 22 22 H 1.48498 * 109.47430 * 239.99516 * 19 17 15 23 23 O 1.43238 * 109.82397 * 23.54889 * 9 8 7 24 24 H 1.09007 * 109.47200 * 270.23305 * 1 2 3 25 25 H 1.09003 * 109.46913 * 30.22690 * 1 2 3 26 26 H 1.08995 * 109.47782 * 150.22863 * 1 2 3 27 27 H 1.08001 * 119.98442 * 0.02562 * 3 2 1 28 28 H 1.07994 * 120.01362 * 179.72978 * 4 3 2 29 29 H 1.08001 * 120.01684 * 179.97438 * 7 5 4 30 30 H 1.09001 * 110.84442 * 259.10055 * 11 9 8 31 31 H 1.09001 * 110.84723 * 22.51027 * 11 9 8 32 32 H 1.08994 * 111.12172 * 207.94506 * 12 11 9 33 33 H 1.09002 * 111.12206 * 83.78645 * 12 11 9 34 34 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1989 -0.0058 5 6 4.2724 -0.0002 -0.0062 6 9 5.6235 -0.0002 -0.0114 7 6 3.5797 -1.1987 -0.0015 8 6 2.1976 -1.1974 0.0043 9 6 1.4430 -2.5019 0.0089 10 1 0.5384 -2.4036 0.6089 11 6 1.0724 -2.9000 -1.4360 12 6 1.2939 -4.4371 -1.4215 13 6 2.4953 -4.5520 -0.4498 14 1 3.4301 -4.3632 -0.9778 15 6 2.5228 -5.9168 0.1888 16 1 1.7930 -6.6605 -0.0950 17 6 3.4761 -6.2138 1.1395 18 7 4.3648 -5.3081 1.4851 19 14 3.5054 -7.9028 1.9368 20 1 2.4077 -8.7327 1.3788 21 1 4.8099 -8.5573 1.6625 22 1 3.3215 -7.7612 3.4036 23 8 2.2713 -3.5403 0.5450 24 1 -0.3634 0.0042 1.0277 25 1 -0.3633 0.8880 -0.5174 26 1 -0.3634 -0.8919 -0.5102 27 1 1.6572 2.1327 0.0004 28 1 4.1190 2.1345 -0.0102 29 1 4.1190 -2.1344 -0.0023 30 1 0.0308 -2.6600 -1.6494 31 1 1.7350 -2.4162 -2.1537 32 1 1.5542 -4.8058 -2.4136 33 1 0.4197 -4.9562 -1.0285 34 1 5.0352 -5.5169 2.1543 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309469743.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:51 Heat of formation + Delta-G solvation = -95.795350 kcal Electronic energy + Delta-G solvation = -18350.465359 eV Core-core repulsion = 15354.422385 eV Total energy + Delta-G solvation = -2996.042974 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.88212 -40.96738 -39.09849 -34.84890 -33.68146 -32.56787 -32.50538 -29.76501 -27.52135 -26.55886 -23.97374 -22.63222 -22.15254 -21.46604 -18.78031 -18.32710 -17.69878 -16.74690 -16.62499 -16.59385 -16.32300 -15.86461 -15.26362 -14.72050 -14.57669 -14.42512 -14.16289 -13.79840 -13.60618 -12.99284 -12.84658 -12.80652 -12.59615 -12.42933 -12.33459 -12.22089 -12.02579 -11.81126 -11.47022 -11.02096 -10.74047 -10.05185 -9.73020 -9.35120 -8.16168 -6.37494 0.18461 0.30897 1.38719 1.39716 1.52455 2.39266 2.59098 3.05724 3.30351 3.62125 3.72260 3.86376 3.95606 4.09859 4.14156 4.20332 4.38696 4.51612 4.63329 4.78800 4.85679 4.89547 4.92329 4.97932 5.07960 5.09584 5.14440 5.25517 5.36236 5.43446 5.54107 5.70812 5.75711 6.01757 6.16076 6.58243 7.02946 7.39365 8.91628 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.024717 B = 0.006956 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.541861 B = 4024.323420 C = 4762.802715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.086 4.086 4 C -0.150 4.150 5 C 0.061 3.939 6 F -0.157 7.157 7 C -0.151 4.151 8 C -0.074 4.074 9 C 0.098 3.902 10 H 0.089 0.911 11 C -0.129 4.129 12 C -0.139 4.139 13 C 0.202 3.798 14 H -0.015 1.015 15 C -0.555 4.555 16 H 0.069 0.931 17 C 0.020 3.980 18 N -0.903 5.903 19 Si 0.963 3.037 20 H -0.258 1.258 21 H -0.278 1.278 22 H -0.282 1.282 23 O -0.385 6.385 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.176 0.824 28 H 0.161 0.839 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.649 13.175 -4.688 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.104 4.104 4 C -0.168 4.168 5 C 0.042 3.958 6 F -0.136 7.136 7 C -0.170 4.170 8 C -0.075 4.075 9 C 0.040 3.960 10 H 0.106 0.894 11 C -0.166 4.166 12 C -0.177 4.177 13 C 0.146 3.854 14 H 0.002 0.998 15 C -0.592 4.592 16 H 0.087 0.913 17 C -0.182 4.182 18 N -0.540 5.540 19 Si 0.787 3.213 20 H -0.182 1.182 21 H -0.204 1.204 22 H -0.208 1.208 23 O -0.304 6.304 24 H 0.098 0.902 25 H 0.116 0.884 26 H 0.089 0.911 27 H 0.193 0.807 28 H 0.178 0.822 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.369 13.200 -4.391 16.235 hybrid contribution 1.217 -1.221 0.471 1.787 sum -7.153 11.979 -3.920 14.492 Atomic orbital electron populations 1.20923 0.88241 1.04427 1.03494 1.20153 0.98253 0.91279 0.99427 1.21279 0.92394 0.98811 0.97897 1.21390 0.95832 0.96210 1.03365 1.18025 0.76457 0.95418 1.05885 1.91428 1.30237 1.97540 1.94384 1.20992 0.95986 0.96777 1.03276 1.20225 0.92396 0.96381 0.98463 1.21758 0.92812 0.85858 0.95594 0.89369 1.23043 1.03311 0.95356 0.94898 1.23220 0.98984 0.95650 0.99812 1.20413 0.91914 0.86879 0.86175 0.99780 1.21600 1.15266 0.97572 1.24797 0.91293 1.26002 0.94514 1.00831 0.96824 1.70204 1.17034 1.35575 1.31225 0.85456 0.78378 0.79410 0.78045 1.18168 1.20356 1.20780 1.88795 1.69524 1.32690 1.39436 0.90200 0.88412 0.91095 0.80685 0.82167 0.88461 0.87200 0.91523 0.90452 0.90792 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.23 71.23 0.66 -1.46 16 2 C -0.09 -2.42 5.88 -19.86 -0.12 -2.54 16 3 C -0.09 -1.93 9.70 22.26 0.22 -1.71 16 4 C -0.15 -3.98 10.03 22.31 0.22 -3.76 16 5 C 0.06 2.24 7.30 22.37 0.16 2.40 16 6 F -0.16 -6.11 17.27 44.97 0.78 -5.34 16 7 C -0.15 -6.45 9.34 22.31 0.21 -6.24 16 8 C -0.07 -2.72 4.94 -19.87 -0.10 -2.82 16 9 C 0.10 3.86 3.00 30.32 0.09 3.95 16 10 H 0.09 3.14 7.06 -2.39 -0.02 3.12 16 11 C -0.13 -4.27 6.11 31.86 0.19 -4.08 16 12 C -0.14 -5.57 6.53 32.05 0.21 -5.36 16 13 C 0.20 10.75 3.27 30.51 0.10 10.85 16 14 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 15 C -0.56 -31.94 8.81 25.60 0.23 -31.71 16 16 H 0.07 3.77 7.77 -2.91 -0.02 3.75 16 17 C 0.02 1.18 5.41 84.65 0.46 1.63 16 18 N -0.90 -56.64 12.93 21.45 0.28 -56.36 16 19 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 23 O -0.38 -20.61 9.03 -148.98 -1.35 -21.95 16 24 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.10 1.20 8.09 -2.39 -0.02 1.18 16 26 H 0.07 1.33 5.75 -2.39 -0.01 1.32 16 27 H 0.18 2.28 8.06 -2.91 -0.02 2.25 16 28 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 29 H 0.10 5.12 7.33 -2.91 -0.02 5.10 16 30 H 0.11 2.71 7.46 -2.39 -0.02 2.69 16 31 H 0.07 2.20 7.84 -2.39 -0.02 2.18 16 32 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.07 2.86 8.05 -2.39 -0.02 2.84 16 34 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -72.23 287.82 5.36 -66.87 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 1.10 Total: 10.53 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 2.53 Total: -40.84 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.28 Total: -56.36 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -1.35 Total: -21.95 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.78 Total: -5.34 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -72.23 5.36 -66.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309469743.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.926 kcal (2) G-P(sol) polarization free energy of solvation -72.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds