Wall clock time and date at job start Mon Mar 30 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38271 * 119.97570 * 2 1 4 4 C 1.38169 * 120.02907 * 180.27665 * 3 2 1 5 5 C 1.38482 * 119.97289 * 359.75178 * 4 3 2 6 6 F 1.35097 * 120.02383 * 180.02562 * 5 4 3 7 7 C 1.38435 * 119.94974 * 359.97438 * 5 4 3 8 8 C 1.38222 * 119.97504 * 179.77243 * 2 1 3 9 9 C 1.50691 * 119.98910 * 359.97438 * 8 2 1 10 10 H 1.08995 * 109.99576 * 324.35795 * 9 8 2 11 11 C 1.54098 * 109.87910 * 85.44081 * 9 8 2 12 12 C 1.54817 * 104.18940 * 121.45284 * 11 9 8 13 13 C 1.54992 * 102.09126 * 20.88210 * 12 11 9 14 14 H 1.09001 * 110.75006 * 81.54167 * 13 12 11 15 15 C 1.50694 * 110.61737 * 204.47446 * 13 12 11 16 16 H 1.08000 * 120.00563 * 355.52405 * 15 13 12 17 17 C 1.37885 * 119.99902 * 175.52569 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 O 1.43753 * 109.88117 * 203.27064 * 9 8 2 24 24 H 1.08999 * 109.46610 * 270.22721 * 1 2 3 25 25 H 1.08999 * 109.47486 * 30.22923 * 1 2 3 26 26 H 1.09002 * 109.46857 * 150.23598 * 1 2 3 27 27 H 1.08004 * 119.98011 * 0.02774 * 3 2 1 28 28 H 1.08003 * 120.01511 * 179.72387 * 4 3 2 29 29 H 1.08002 * 120.01569 * 179.97438 * 7 5 4 30 30 H 1.08996 * 110.49148 * 240.13136 * 11 9 8 31 31 H 1.09007 * 110.48913 * 2.64729 * 11 9 8 32 32 H 1.08997 * 110.90945 * 262.67991 * 12 11 9 33 33 H 1.09005 * 110.90554 * 139.08086 * 12 11 9 34 34 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5795 1.1990 -0.0058 5 6 4.2725 0.0001 -0.0064 6 9 5.6234 0.0001 -0.0115 7 6 3.5798 -1.1985 -0.0006 8 6 2.1976 -1.1973 0.0048 9 6 1.4433 -2.5019 0.0105 10 1 0.5364 -2.4054 0.6073 11 6 1.0807 -2.9039 -1.4322 12 6 1.7461 -4.2893 -1.6188 13 6 1.9339 -4.7591 -0.1537 14 1 1.0088 -5.1827 0.2375 15 6 3.0563 -5.7599 -0.0572 16 1 3.5518 -6.1039 -0.9531 17 6 3.4508 -6.2366 1.1750 18 7 2.8478 -5.8175 2.2661 19 14 4.8418 -7.4777 1.2946 20 1 5.0715 -7.8280 2.7194 21 1 4.4798 -8.7017 0.5356 22 1 6.0803 -6.8897 0.7241 23 8 2.2739 -3.5444 0.5487 24 1 -0.3632 0.0041 1.0277 25 1 -0.3634 0.8879 -0.5174 26 1 -0.3633 -0.8921 -0.5102 27 1 1.6571 2.1327 0.0005 28 1 4.1189 2.1347 -0.0103 29 1 4.1192 -2.1342 -0.0015 30 1 -0.0005 -2.9815 -1.5465 31 1 1.4878 -2.1842 -2.1426 32 1 2.7077 -4.1942 -2.1231 33 1 1.0882 -4.9666 -2.1633 34 1 3.1251 -6.1532 3.1329 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309469745.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:53 Heat of formation + Delta-G solvation = -78.353942 kcal Electronic energy + Delta-G solvation = -18314.296261 eV Core-core repulsion = 15319.009602 eV Total energy + Delta-G solvation = -2995.286658 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.53932 -39.55222 -37.55202 -32.93617 -32.32104 -31.19547 -30.84338 -28.02572 -26.37081 -24.81139 -22.51435 -21.36928 -20.47825 -19.87395 -17.18795 -16.41681 -16.27911 -15.36848 -15.16495 -15.13098 -14.60714 -14.16316 -13.76840 -13.47878 -13.45705 -12.96664 -12.60235 -12.37716 -11.93244 -11.76756 -11.67114 -11.37720 -11.00421 -10.90599 -10.64774 -10.49702 -10.37168 -10.16860 -9.71883 -9.13680 -8.67146 -8.55016 -8.21116 -8.04741 -6.03818 -4.16962 1.40446 1.54081 3.31799 3.36772 3.38967 3.82274 4.40636 4.55348 4.83076 4.92426 5.12282 5.24340 5.33909 5.41060 5.49833 5.56121 5.63953 5.74546 5.87342 5.99912 6.06890 6.12664 6.26621 6.38251 6.44207 6.49709 6.54364 6.58839 6.74384 6.78774 6.98540 7.23362 7.47024 7.86435 8.18627 8.50620 8.94281 9.53946 11.03824 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.007112 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.299631 B = 3935.988508 C = 4653.457090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.100 4.100 4 C -0.162 4.162 5 C 0.085 3.915 6 F -0.145 7.145 7 C -0.119 4.119 8 C -0.040 4.040 9 C 0.103 3.897 10 H 0.064 0.936 11 C -0.145 4.145 12 C -0.147 4.147 13 C 0.209 3.791 14 H 0.028 0.972 15 C -0.533 4.533 16 H 0.064 0.936 17 C 0.078 3.922 18 N -0.862 5.862 19 Si 0.892 3.108 20 H -0.286 1.286 21 H -0.275 1.275 22 H -0.275 1.275 23 O -0.345 6.345 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.149 0.851 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.920 11.928 -5.119 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.098 4.098 3 C -0.118 4.118 4 C -0.181 4.181 5 C 0.066 3.934 6 F -0.123 7.123 7 C -0.137 4.137 8 C -0.041 4.041 9 C 0.044 3.956 10 H 0.081 0.919 11 C -0.183 4.183 12 C -0.184 4.184 13 C 0.154 3.846 14 H 0.045 0.955 15 C -0.570 4.570 16 H 0.082 0.918 17 C -0.128 4.128 18 N -0.498 5.498 19 Si 0.719 3.281 20 H -0.211 1.211 21 H -0.201 1.201 22 H -0.200 1.200 23 O -0.264 6.264 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.167 0.833 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.728 11.929 -4.750 13.370 hybrid contribution 0.940 -0.549 0.043 1.089 sum -2.788 11.381 -4.707 12.627 Atomic orbital electron populations 1.20808 0.91073 1.02745 1.02470 1.19747 0.96328 0.92292 1.01469 1.20711 0.92951 0.97488 1.00650 1.20991 0.94966 0.96673 1.05489 1.17762 0.76748 0.94696 1.04208 1.91467 1.29312 1.97458 1.94107 1.21215 0.94795 0.97699 1.00014 1.19843 0.93022 0.94667 0.96540 1.21432 0.93123 0.87230 0.93804 0.91884 1.22932 1.00237 0.98620 0.96487 1.23217 0.99740 0.94149 1.01344 1.20688 0.96570 0.83299 0.84046 0.95471 1.20945 1.19989 1.23039 0.93071 0.91751 1.25078 0.96191 0.95720 0.95834 1.70023 1.40138 1.41759 0.97854 0.86676 0.82768 0.81547 0.77106 1.21142 1.20053 1.20027 1.89303 1.59089 1.17123 1.60895 0.91071 0.91751 0.91042 0.85531 0.85413 0.83307 0.91732 0.91858 0.91638 0.92066 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.23 36.00 0.33 -1.01 16 2 C -0.10 -1.45 5.88 -104.62 -0.62 -2.06 16 3 C -0.10 -1.31 9.70 -39.59 -0.38 -1.70 16 4 C -0.16 -2.30 10.03 -39.52 -0.40 -2.70 16 5 C 0.08 1.46 7.30 -39.42 -0.29 1.17 16 6 F -0.14 -2.55 17.27 2.25 0.04 -2.51 16 7 C -0.12 -2.29 9.34 -39.51 -0.37 -2.66 16 8 C -0.04 -0.73 4.85 -104.64 -0.51 -1.24 16 9 C 0.10 2.04 2.89 -27.31 -0.08 1.96 16 10 H 0.06 1.20 7.06 -51.93 -0.37 0.83 16 11 C -0.14 -2.53 5.94 -25.20 -0.15 -2.68 16 12 C -0.15 -2.99 6.55 -24.72 -0.16 -3.15 16 13 C 0.21 5.30 3.16 -26.83 -0.08 5.22 16 14 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 15 C -0.53 -14.82 8.83 -34.44 -0.30 -15.13 16 16 H 0.06 1.73 7.78 -52.49 -0.41 1.32 16 17 C 0.08 2.20 5.42 -17.82 -0.10 2.11 16 18 N -0.86 -25.52 12.94 55.43 0.72 -24.80 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 O -0.34 -8.78 9.25 -35.23 -0.33 -9.11 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.07 0.85 6.19 -51.93 -0.32 0.53 16 27 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 28 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 29 H 0.15 3.24 7.33 -52.49 -0.38 2.86 16 30 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 31 H 0.06 1.03 7.69 -51.93 -0.40 0.63 16 32 H 0.06 1.36 8.05 -51.93 -0.42 0.94 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 288.59 15.07 4.35 4.35 Total: -1.00 -30.25 288.59 -7.73 -37.98 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.39 Total: -0.42 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -3.10 Total: -21.86 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.72 Total: -24.80 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.33 Total: -9.11 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.25 -7.73 -37.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309469745.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.372 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds