Wall clock time and date at job start Mon Mar 30 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38271 * 119.97570 * 2 1 4 4 C 1.38169 * 120.02907 * 180.27665 * 3 2 1 5 5 C 1.38482 * 119.97289 * 359.75178 * 4 3 2 6 6 F 1.35097 * 120.02383 * 180.02562 * 5 4 3 7 7 C 1.38435 * 119.94974 * 359.97438 * 5 4 3 8 8 C 1.38222 * 119.97504 * 179.77243 * 2 1 3 9 9 C 1.50691 * 119.98910 * 359.97438 * 8 2 1 10 10 H 1.08995 * 109.99576 * 324.35795 * 9 8 2 11 11 C 1.54098 * 109.87910 * 85.44081 * 9 8 2 12 12 C 1.54817 * 104.18940 * 121.45284 * 11 9 8 13 13 C 1.54992 * 102.09126 * 20.88210 * 12 11 9 14 14 H 1.09001 * 110.75006 * 81.54167 * 13 12 11 15 15 C 1.50694 * 110.61737 * 204.47446 * 13 12 11 16 16 H 1.08000 * 120.00563 * 355.52405 * 15 13 12 17 17 C 1.37885 * 119.99902 * 175.52569 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 O 1.43753 * 109.88117 * 203.27064 * 9 8 2 24 24 H 1.08999 * 109.46610 * 270.22721 * 1 2 3 25 25 H 1.08999 * 109.47486 * 30.22923 * 1 2 3 26 26 H 1.09002 * 109.46857 * 150.23598 * 1 2 3 27 27 H 1.08004 * 119.98011 * 0.02774 * 3 2 1 28 28 H 1.08003 * 120.01511 * 179.72387 * 4 3 2 29 29 H 1.08002 * 120.01569 * 179.97438 * 7 5 4 30 30 H 1.08996 * 110.49148 * 240.13136 * 11 9 8 31 31 H 1.09007 * 110.48913 * 2.64729 * 11 9 8 32 32 H 1.08997 * 110.90945 * 262.67991 * 12 11 9 33 33 H 1.09005 * 110.90554 * 139.08086 * 12 11 9 34 34 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5795 1.1990 -0.0058 5 6 4.2725 0.0001 -0.0064 6 9 5.6234 0.0001 -0.0115 7 6 3.5798 -1.1985 -0.0006 8 6 2.1976 -1.1973 0.0048 9 6 1.4433 -2.5019 0.0105 10 1 0.5364 -2.4054 0.6073 11 6 1.0807 -2.9039 -1.4322 12 6 1.7461 -4.2893 -1.6188 13 6 1.9339 -4.7591 -0.1537 14 1 1.0088 -5.1827 0.2375 15 6 3.0563 -5.7599 -0.0572 16 1 3.5518 -6.1039 -0.9531 17 6 3.4508 -6.2366 1.1750 18 7 2.8478 -5.8175 2.2661 19 14 4.8418 -7.4777 1.2946 20 1 5.0715 -7.8280 2.7194 21 1 4.4798 -8.7017 0.5356 22 1 6.0803 -6.8897 0.7241 23 8 2.2739 -3.5444 0.5487 24 1 -0.3632 0.0041 1.0277 25 1 -0.3634 0.8879 -0.5174 26 1 -0.3633 -0.8921 -0.5102 27 1 1.6571 2.1327 0.0005 28 1 4.1189 2.1347 -0.0103 29 1 4.1192 -2.1342 -0.0015 30 1 -0.0005 -2.9815 -1.5465 31 1 1.4878 -2.1842 -2.1426 32 1 2.7077 -4.1942 -2.1231 33 1 1.0882 -4.9666 -2.1633 34 1 3.1251 -6.1532 3.1329 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309469745.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:53 Heat of formation + Delta-G solvation = -95.574090 kcal Electronic energy + Delta-G solvation = -18315.042982 eV Core-core repulsion = 15319.009602 eV Total energy + Delta-G solvation = -2996.033380 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.88226 -40.94389 -39.11613 -34.86274 -33.67942 -32.58813 -32.52370 -29.72552 -27.53782 -26.57046 -24.02825 -22.64892 -22.22368 -21.33531 -18.87103 -18.18724 -17.60848 -16.96290 -16.60301 -16.52222 -16.33236 -15.75934 -15.42792 -14.69527 -14.51100 -14.27898 -14.22233 -14.14230 -13.63275 -12.99433 -12.86414 -12.78276 -12.59243 -12.44893 -12.37503 -12.15403 -12.07199 -11.83723 -11.31833 -11.05591 -10.74502 -10.11398 -9.79029 -9.36707 -8.19146 -6.39153 0.17414 0.29970 1.37441 1.40798 1.47997 2.37694 2.58517 3.03339 3.28980 3.54836 3.75037 3.91882 3.99309 4.09288 4.12555 4.17294 4.36138 4.54635 4.61832 4.79732 4.85289 4.88951 4.92441 4.96695 5.03635 5.07525 5.17739 5.24427 5.34425 5.41454 5.48918 5.69821 5.72241 5.99995 6.13044 6.54016 6.92489 7.36192 8.89022 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.007112 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.299631 B = 3935.988508 C = 4653.457090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.085 4.085 4 C -0.148 4.148 5 C 0.064 3.936 6 F -0.155 7.155 7 C -0.149 4.149 8 C -0.062 4.062 9 C 0.096 3.904 10 H 0.068 0.932 11 C -0.130 4.130 12 C -0.139 4.139 13 C 0.200 3.800 14 H 0.000 1.000 15 C -0.555 4.555 16 H 0.065 0.935 17 C 0.023 3.977 18 N -0.901 5.901 19 Si 0.959 3.041 20 H -0.282 1.282 21 H -0.260 1.260 22 H -0.274 1.274 23 O -0.383 6.383 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.067 0.933 27 H 0.175 0.825 28 H 0.162 0.838 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 14.298 -6.156 16.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 C -0.102 4.102 4 C -0.167 4.167 5 C 0.045 3.955 6 F -0.134 7.134 7 C -0.168 4.168 8 C -0.063 4.063 9 C 0.037 3.963 10 H 0.086 0.914 11 C -0.167 4.167 12 C -0.177 4.177 13 C 0.144 3.856 14 H 0.017 0.983 15 C -0.592 4.592 16 H 0.083 0.917 17 C -0.179 4.179 18 N -0.538 5.538 19 Si 0.783 3.217 20 H -0.207 1.207 21 H -0.184 1.184 22 H -0.199 1.199 23 O -0.303 6.303 24 H 0.096 0.904 25 H 0.117 0.883 26 H 0.086 0.914 27 H 0.193 0.807 28 H 0.179 0.821 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.834 14.298 -5.806 16.171 hybrid contribution 1.230 -1.189 0.365 1.749 sum -3.604 13.109 -5.440 14.644 Atomic orbital electron populations 1.20911 0.88556 1.04323 1.03362 1.20123 0.98114 0.91390 0.99570 1.21256 0.92511 0.98640 0.97836 1.21402 0.95712 0.96411 1.03152 1.17974 0.76506 0.95298 1.05714 1.91433 1.30036 1.97525 1.94356 1.20975 0.95694 0.96964 1.03208 1.19801 0.92442 0.95249 0.98780 1.21663 0.92805 0.86810 0.95016 0.91395 1.22875 1.01868 0.96767 0.95239 1.23079 1.00153 0.96366 0.98067 1.20582 0.94464 0.83483 0.87034 0.98263 1.21401 1.20549 1.23975 0.93276 0.91697 1.25946 0.98727 0.97733 0.95488 1.70161 1.41947 1.43411 0.98264 0.85618 0.79334 0.79424 0.77308 1.20698 1.18443 1.19941 1.89213 1.60636 1.18285 1.62127 0.90407 0.88296 0.91406 0.80722 0.82059 0.87780 0.88670 0.90263 0.92647 0.90074 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 9.23 71.24 0.66 -1.57 16 2 C -0.09 -2.43 5.88 -19.86 -0.12 -2.55 16 3 C -0.08 -1.84 9.70 22.26 0.22 -1.62 16 4 C -0.15 -3.73 10.03 22.31 0.22 -3.51 16 5 C 0.06 2.20 7.30 22.38 0.16 2.36 16 6 F -0.15 -5.58 17.27 44.97 0.78 -4.80 16 7 C -0.15 -6.02 9.34 22.31 0.21 -5.81 16 8 C -0.06 -2.25 4.85 -19.87 -0.10 -2.35 16 9 C 0.10 3.82 2.89 30.22 0.09 3.91 16 10 H 0.07 2.59 7.06 -2.39 -0.02 2.57 16 11 C -0.13 -4.40 5.94 31.59 0.19 -4.21 16 12 C -0.14 -5.72 6.55 31.90 0.21 -5.51 16 13 C 0.20 10.59 3.16 30.53 0.10 10.69 16 14 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 15 C -0.55 -32.14 8.83 25.60 0.23 -31.92 16 16 H 0.06 3.62 7.78 -2.91 -0.02 3.60 16 17 C 0.02 1.36 5.42 84.66 0.46 1.82 16 18 N -0.90 -55.66 12.94 21.45 0.28 -55.38 16 19 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 23 O -0.38 -20.55 9.25 -148.98 -1.38 -21.93 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.10 1.27 8.09 -2.39 -0.02 1.25 16 26 H 0.07 1.38 6.19 -2.39 -0.01 1.36 16 27 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 28 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 29 H 0.10 5.02 7.33 -2.91 -0.02 5.00 16 30 H 0.09 2.62 8.10 -2.39 -0.02 2.60 16 31 H 0.08 2.43 7.69 -2.38 -0.02 2.41 16 32 H 0.05 2.35 8.05 -2.39 -0.02 2.33 16 33 H 0.08 2.96 8.14 -2.38 -0.02 2.94 16 34 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -70.47 288.59 5.32 -65.15 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.09 Total: 9.98 kcal Atomic # 6 Polarization: -42.78 SS G_CDS: 2.52 Total: -40.26 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.28 Total: -55.38 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -1.38 Total: -21.93 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.78 Total: -4.80 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -70.47 5.32 -65.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309469745.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.420 kcal (2) G-P(sol) polarization free energy of solvation -70.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds