Wall clock time and date at job start Mon Mar 30 2020 06:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47275 * 2 1 4 4 H 1.08996 * 109.47557 * 305.00282 * 3 2 1 5 5 C 1.50698 * 109.47036 * 65.00474 * 3 2 1 6 6 O 1.20830 * 119.99760 * 359.97438 * 5 3 2 7 7 O 1.34233 * 120.00295 * 179.97438 * 5 3 2 8 8 C 1.50700 * 109.46884 * 184.99824 * 3 2 1 9 9 C 1.36449 * 119.91077 * 300.00233 * 8 3 2 10 10 C 1.40813 * 119.81390 * 179.97438 * 9 8 3 11 11 C 1.41215 * 120.18036 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00211 * 334.67693 * 11 10 9 13 13 C 1.39892 * 120.00110 * 154.67876 * 11 10 9 14 14 N 1.30882 * 119.99999 * 342.90389 * 13 11 10 15 15 Si 1.86800 * 120.00212 * 162.90235 * 13 11 10 16 16 H 1.48499 * 109.47018 * 59.99983 * 15 13 11 17 17 H 1.48496 * 109.47157 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47113 * 300.00016 * 15 13 11 19 19 C 1.40854 * 119.64287 * 0.02562 * 10 9 8 20 20 C 1.36418 * 119.80679 * 359.97438 * 19 10 9 21 21 C 1.39293 * 119.90456 * 119.72864 * 8 3 2 22 22 O 1.35678 * 119.81725 * 359.97438 * 21 8 3 23 23 H 1.09003 * 109.46932 * 300.00209 * 1 2 3 24 24 H 1.09008 * 109.47093 * 59.99330 * 1 2 3 25 25 H 1.08997 * 109.47581 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46473 * 239.99842 * 2 1 3 27 27 H 1.08997 * 109.46667 * 120.00954 * 2 1 3 28 28 H 0.96701 * 117.00009 * 179.97438 * 7 5 3 29 29 H 1.08001 * 120.09438 * 0.02562 * 9 8 3 30 30 H 0.96996 * 120.00128 * 180.02562 * 14 13 11 31 31 H 1.08000 * 120.09354 * 180.02562 * 19 10 9 32 32 H 1.08005 * 119.90185 * 180.02562 * 20 19 10 33 33 H 0.96698 * 114.00183 * 90.00260 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 1.6415 2.1161 1.2877 6 8 1.0135 1.5053 2.1199 7 8 1.9841 3.3948 1.5103 8 6 3.5420 1.4441 -0.1238 9 6 4.3035 0.8240 0.8235 10 6 5.7066 0.8264 0.7055 11 6 6.5022 0.1874 1.6817 12 1 6.1259 0.0596 2.6860 13 6 7.7778 -0.2800 1.3481 14 7 8.1098 -0.4358 0.0917 15 14 9.0075 -0.6817 2.6957 16 1 8.4530 -1.7458 3.5705 17 1 10.2751 -1.1550 2.0840 18 1 9.2716 0.5359 3.5037 19 6 6.3125 1.4704 -0.3909 20 6 5.5367 2.0858 -1.3292 21 6 4.1487 2.0739 -1.2080 22 8 3.3841 2.6830 -2.1488 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5140 0.8899 28 1 1.7057 3.7840 2.3507 29 1 3.8313 0.3320 1.6610 30 1 8.9941 -0.7602 -0.1397 31 1 7.3880 1.4764 -0.4888 32 1 5.9996 2.5798 -2.1708 33 1 3.1990 3.6138 -1.9631 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309504028.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:45 Heat of formation + Delta-G solvation = -134.446944 kcal Electronic energy + Delta-G solvation = -18349.958576 eV Core-core repulsion = 15339.866753 eV Total energy + Delta-G solvation = -3010.091823 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.21402 -38.37634 -36.02077 -35.77781 -34.50856 -33.10166 -30.18596 -29.32530 -26.57904 -24.88909 -22.91623 -21.50332 -20.78427 -19.59143 -17.82214 -17.22892 -17.19266 -16.29668 -15.49381 -15.11462 -14.42254 -14.17462 -13.85156 -13.54963 -13.25000 -12.77876 -12.58291 -12.09038 -11.82648 -11.59078 -11.38132 -11.27806 -11.23952 -10.92177 -10.77541 -10.76505 -10.55598 -10.24300 -9.93833 -9.83571 -9.28250 -9.04016 -7.65079 -7.31838 -6.87380 -4.44225 2.47521 2.65884 2.80039 3.01471 3.03547 3.09883 3.51400 3.85555 4.43016 5.17078 5.28257 5.32404 5.50941 5.64599 5.74627 5.83876 5.94383 6.13188 6.20786 6.32155 6.52210 6.56915 6.80794 6.88133 6.94027 7.01899 7.15829 7.42410 7.47139 7.84258 7.89458 8.07004 8.27231 8.41826 8.62258 8.75366 8.92575 10.07404 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.024145 B = 0.006868 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.364254 B = 4075.747618 C = 4538.372410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.100 4.100 3 C -0.030 4.030 4 H 0.110 0.890 5 C 0.493 3.507 6 O -0.523 6.523 7 O -0.511 6.511 8 C -0.071 4.071 9 C -0.207 4.207 10 C 0.110 3.890 11 C -0.457 4.457 12 H 0.079 0.921 13 C 0.076 3.924 14 N -0.790 5.790 15 Si 0.910 3.090 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.263 1.263 19 C -0.150 4.150 20 C -0.115 4.115 21 C -0.027 4.027 22 O -0.501 6.501 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.401 0.599 29 H 0.095 0.905 30 H 0.283 0.717 31 H 0.122 0.878 32 H 0.096 0.904 33 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.576 4.295 0.331 7.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.138 4.138 3 C -0.049 4.049 4 H 0.128 0.872 5 C 0.336 3.664 6 O -0.412 6.412 7 O -0.322 6.322 8 C -0.072 4.072 9 C -0.227 4.227 10 C 0.108 3.892 11 C -0.486 4.486 12 H 0.097 0.903 13 C -0.143 4.143 14 N -0.414 5.414 15 Si 0.734 3.266 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.187 1.187 19 C -0.169 4.169 20 C -0.134 4.134 21 C -0.072 4.072 22 O -0.308 6.308 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.258 0.742 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.140 0.860 32 H 0.114 0.886 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -6.404 3.280 -0.249 7.199 hybrid contribution 0.498 0.478 1.301 1.473 sum -5.906 3.758 1.052 7.079 Atomic orbital electron populations 1.21954 0.95930 1.01738 1.02025 1.21402 0.95400 0.93529 1.03451 1.19899 0.96025 0.96641 0.92373 0.87228 1.23684 0.74322 0.79169 0.89180 1.90624 1.38541 1.65042 1.46978 1.84610 1.74689 1.28629 1.44223 1.18831 0.90660 1.01940 0.95746 1.20468 0.93870 1.07813 1.00523 1.17589 0.90632 0.88943 0.92075 1.19542 0.98689 1.32525 0.97884 0.90294 1.25937 0.98887 0.93223 0.96238 1.69823 1.21117 1.32237 1.18268 0.86327 0.79105 0.79822 0.81309 1.18903 1.20212 1.18724 1.21036 0.99717 1.00025 0.96140 1.20709 0.92511 1.01378 0.98800 1.17737 0.88853 1.07493 0.93121 1.84817 1.71906 1.26858 1.47207 0.91432 0.93336 0.92808 0.90516 0.90844 0.74193 0.88641 0.90576 0.86010 0.88550 0.79347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.65 37.16 0.36 -1.95 16 2 C -0.10 -1.72 4.78 -26.73 -0.13 -1.84 16 3 C -0.03 -0.55 2.44 -92.93 -0.23 -0.77 16 4 H 0.11 1.84 6.98 -51.93 -0.36 1.48 16 5 C 0.49 8.63 6.95 36.00 0.25 8.89 16 6 O -0.52 -9.87 14.73 -18.75 -0.28 -10.14 16 7 O -0.51 -7.72 13.34 -39.26 -0.52 -8.25 16 8 C -0.07 -1.53 4.70 -104.87 -0.49 -2.03 16 9 C -0.21 -4.95 8.53 -39.25 -0.33 -5.28 16 10 C 0.11 2.85 5.57 -106.80 -0.59 2.26 16 11 C -0.46 -11.82 9.04 -37.83 -0.34 -12.17 16 12 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 13 C 0.08 1.85 5.15 -17.34 -0.09 1.76 16 14 N -0.79 -19.84 10.96 55.54 0.61 -19.23 16 15 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 16 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 17 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 18 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 19 C -0.15 -3.77 8.64 -39.25 -0.34 -4.11 16 20 C -0.12 -2.66 9.92 -39.83 -0.40 -3.05 16 21 C -0.03 -0.60 6.70 -38.78 -0.26 -0.86 16 22 O -0.50 -9.52 12.23 -18.73 -0.23 -9.75 16 23 H 0.07 1.04 5.96 -51.93 -0.31 0.73 16 24 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.07 1.35 7.36 -51.93 -0.38 0.97 16 28 H 0.40 4.08 9.10 45.56 0.41 4.50 16 29 H 0.10 2.25 7.59 -52.49 -0.40 1.86 16 30 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 31 H 0.12 3.14 6.19 -52.49 -0.32 2.82 16 32 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 33 H 0.36 5.21 9.06 45.56 0.41 5.62 16 LS Contribution 285.17 15.07 4.30 4.30 Total: -1.00 -29.13 285.17 -5.94 -35.06 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -2.19 Total: 14.00 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -2.59 Total: -19.16 kcal Atomic # 7 Polarization: -19.84 SS G_CDS: 0.61 Total: -19.23 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -1.03 Total: -28.14 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.13 -5.94 -35.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309504028.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.384 kcal (2) G-P(sol) polarization free energy of solvation -29.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds