Wall clock time and date at job start Mon Mar 30 2020 06:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47275 * 2 1 4 4 H 1.08996 * 109.47557 * 305.00282 * 3 2 1 5 5 C 1.50698 * 109.47036 * 65.00474 * 3 2 1 6 6 O 1.20830 * 119.99760 * 359.97438 * 5 3 2 7 7 O 1.34233 * 120.00295 * 179.97438 * 5 3 2 8 8 C 1.50700 * 109.46884 * 184.99824 * 3 2 1 9 9 C 1.36449 * 119.91077 * 300.00233 * 8 3 2 10 10 C 1.40813 * 119.81390 * 179.97438 * 9 8 3 11 11 C 1.41215 * 120.18036 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00211 * 334.67693 * 11 10 9 13 13 C 1.39892 * 120.00110 * 154.67876 * 11 10 9 14 14 N 1.30882 * 119.99999 * 342.90389 * 13 11 10 15 15 Si 1.86800 * 120.00212 * 162.90235 * 13 11 10 16 16 H 1.48499 * 109.47018 * 59.99983 * 15 13 11 17 17 H 1.48496 * 109.47157 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47113 * 300.00016 * 15 13 11 19 19 C 1.40854 * 119.64287 * 0.02562 * 10 9 8 20 20 C 1.36418 * 119.80679 * 359.97438 * 19 10 9 21 21 C 1.39293 * 119.90456 * 119.72864 * 8 3 2 22 22 O 1.35678 * 119.81725 * 359.97438 * 21 8 3 23 23 H 1.09003 * 109.46932 * 300.00209 * 1 2 3 24 24 H 1.09008 * 109.47093 * 59.99330 * 1 2 3 25 25 H 1.08997 * 109.47581 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46473 * 239.99842 * 2 1 3 27 27 H 1.08997 * 109.46667 * 120.00954 * 2 1 3 28 28 H 0.96701 * 117.00009 * 179.97438 * 7 5 3 29 29 H 1.08001 * 120.09438 * 0.02562 * 9 8 3 30 30 H 0.96996 * 120.00128 * 180.02562 * 14 13 11 31 31 H 1.08000 * 120.09354 * 180.02562 * 19 10 9 32 32 H 1.08005 * 119.90185 * 180.02562 * 20 19 10 33 33 H 0.96698 * 114.00183 * 90.00260 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 1.6415 2.1161 1.2877 6 8 1.0135 1.5053 2.1199 7 8 1.9841 3.3948 1.5103 8 6 3.5420 1.4441 -0.1238 9 6 4.3035 0.8240 0.8235 10 6 5.7066 0.8264 0.7055 11 6 6.5022 0.1874 1.6817 12 1 6.1259 0.0596 2.6860 13 6 7.7778 -0.2800 1.3481 14 7 8.1098 -0.4358 0.0917 15 14 9.0075 -0.6817 2.6957 16 1 8.4530 -1.7458 3.5705 17 1 10.2751 -1.1550 2.0840 18 1 9.2716 0.5359 3.5037 19 6 6.3125 1.4704 -0.3909 20 6 5.5367 2.0858 -1.3292 21 6 4.1487 2.0739 -1.2080 22 8 3.3841 2.6830 -2.1488 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5140 0.8899 28 1 1.7057 3.7840 2.3507 29 1 3.8313 0.3320 1.6610 30 1 8.9941 -0.7602 -0.1397 31 1 7.3880 1.4764 -0.4888 32 1 5.9996 2.5798 -2.1708 33 1 3.1990 3.6138 -1.9631 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309504028.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:45 Heat of formation + Delta-G solvation = -153.628975 kcal Electronic energy + Delta-G solvation = -18350.790371 eV Core-core repulsion = 15339.866753 eV Total energy + Delta-G solvation = -3010.923618 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.63321 -40.05062 -37.50396 -37.30777 -36.02478 -34.83476 -31.75949 -31.13790 -28.13617 -26.71588 -24.22747 -23.21471 -22.53891 -21.06007 -19.34443 -18.87906 -18.81915 -17.71361 -17.22642 -16.62576 -16.09998 -15.81045 -15.43980 -14.91849 -14.66750 -14.33874 -14.19352 -13.63253 -13.54595 -13.15968 -12.98404 -12.86283 -12.67501 -12.47476 -12.31184 -12.12138 -12.03641 -11.92446 -11.58923 -11.33819 -11.05136 -10.77461 -9.47811 -9.14963 -8.68897 -6.36334 0.78180 0.93379 1.24400 1.37499 1.47268 1.50639 2.18474 2.22730 2.63146 3.52442 3.75004 3.82753 3.99877 4.13717 4.36841 4.48357 4.57162 4.61576 4.85368 4.94851 5.07148 5.10244 5.17149 5.24479 5.34541 5.35356 5.58782 5.66839 5.75523 6.00365 6.01968 6.21938 6.55891 6.84676 6.86968 7.03952 7.28284 8.28352 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.024145 B = 0.006868 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.364254 B = 4075.747618 C = 4538.372410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 C -0.029 4.029 4 H 0.130 0.870 5 C 0.497 3.503 6 O -0.539 6.539 7 O -0.509 6.509 8 C -0.068 4.068 9 C -0.217 4.217 10 C 0.081 3.919 11 C -0.496 4.496 12 H 0.074 0.926 13 C 0.038 3.962 14 N -0.821 5.821 15 Si 0.981 3.019 16 H -0.262 1.262 17 H -0.265 1.265 18 H -0.259 1.259 19 C -0.170 4.170 20 C -0.122 4.122 21 C -0.015 4.015 22 O -0.498 6.498 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.423 0.577 29 H 0.088 0.912 30 H 0.291 0.709 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.460 5.029 0.017 8.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C -0.048 4.048 4 H 0.147 0.853 5 C 0.341 3.659 6 O -0.430 6.430 7 O -0.322 6.322 8 C -0.069 4.069 9 C -0.237 4.237 10 C 0.078 3.922 11 C -0.525 4.525 12 H 0.092 0.908 13 C -0.178 4.178 14 N -0.447 5.447 15 Si 0.801 3.199 16 H -0.186 1.186 17 H -0.189 1.189 18 H -0.184 1.184 19 C -0.189 4.189 20 C -0.141 4.141 21 C -0.060 4.060 22 O -0.308 6.308 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.284 0.716 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -7.308 4.055 -0.563 8.377 hybrid contribution 0.645 0.367 1.298 1.495 sum -6.663 4.422 0.735 8.031 Atomic orbital electron populations 1.21877 0.93569 1.02887 1.02442 1.21386 0.97424 0.92727 1.02280 1.19929 0.93472 0.97689 0.93677 0.85281 1.23465 0.74051 0.79738 0.88688 1.90627 1.39423 1.65633 1.47310 1.84541 1.74281 1.27429 1.45913 1.19066 0.92685 1.00402 0.94718 1.20496 0.93464 1.08541 1.01211 1.17911 0.91727 0.89750 0.92771 1.19764 1.00370 1.34489 0.97920 0.90819 1.26732 1.00049 0.92514 0.98497 1.69866 1.21917 1.32915 1.19977 0.85268 0.76805 0.79572 0.78220 1.18608 1.18935 1.18363 1.20971 0.99319 1.01484 0.97158 1.20949 0.93279 1.01014 0.98829 1.17780 0.88660 1.06661 0.92864 1.84728 1.71049 1.28825 1.46180 0.92379 0.91418 0.91407 0.90785 0.92972 0.71588 0.89374 0.89865 0.87465 0.86685 0.76233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.65 71.98 0.69 -3.32 16 2 C -0.10 -3.32 4.78 30.59 0.15 -3.18 16 3 C -0.03 -0.99 2.44 -12.29 -0.03 -1.02 16 4 H 0.13 3.90 6.98 -2.39 -0.02 3.89 16 5 C 0.50 16.53 6.95 71.24 0.50 17.03 16 6 O -0.54 -19.69 14.73 21.95 0.32 -19.37 16 7 O -0.51 -14.16 13.34 -51.44 -0.69 -14.85 16 8 C -0.07 -2.87 4.70 -20.03 -0.09 -2.96 16 9 C -0.22 -10.57 8.53 22.48 0.19 -10.38 16 10 C 0.08 4.31 5.57 -21.28 -0.12 4.19 16 11 C -0.50 -26.61 9.04 23.40 0.21 -26.39 16 12 H 0.07 3.85 7.90 -2.91 -0.02 3.83 16 13 C 0.04 1.87 5.15 85.23 0.44 2.31 16 14 N -0.82 -42.25 10.96 21.82 0.24 -42.01 16 15 Si 0.98 37.71 29.59 68.60 2.03 39.74 16 16 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 17 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 18 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 19 C -0.17 -8.75 8.64 22.49 0.19 -8.55 16 20 C -0.12 -5.56 9.92 22.11 0.22 -5.34 16 21 C -0.01 -0.62 6.70 22.79 0.15 -0.46 16 22 O -0.50 -17.22 12.23 -89.95 -1.10 -18.33 16 23 H 0.06 1.68 5.96 -2.39 -0.01 1.66 16 24 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.05 1.92 7.36 -2.39 -0.02 1.91 16 28 H 0.42 7.57 9.10 -74.06 -0.67 6.90 16 29 H 0.09 4.31 7.59 -2.91 -0.02 4.29 16 30 H 0.29 13.49 8.30 -92.71 -0.77 12.72 16 31 H 0.11 5.75 6.19 -2.91 -0.02 5.73 16 32 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 33 H 0.38 9.60 9.06 -74.06 -0.67 8.93 16 Total: -1.00 -63.00 285.17 3.12 -59.88 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: -0.19 Total: 33.02 kcal Atomic # 6 Polarization: -40.58 SS G_CDS: 2.50 Total: -38.08 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.24 Total: -42.01 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -1.46 Total: -52.54 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Total: -63.00 3.12 -59.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309504028.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.752 kcal (2) G-P(sol) polarization free energy of solvation -62.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds