Wall clock time and date at job start Mon Mar 30 2020 06:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47274 * 2 1 4 4 H 1.09006 * 109.46880 * 305.00342 * 3 2 1 5 5 C 1.50702 * 109.47499 * 185.00189 * 3 2 1 6 6 O 1.20818 * 120.00126 * 240.00292 * 5 3 2 7 7 O 1.34226 * 119.99849 * 59.72384 * 5 3 2 8 8 C 1.50703 * 109.47079 * 65.00097 * 3 2 1 9 9 C 1.36449 * 119.90663 * 59.72840 * 8 3 2 10 10 C 1.40817 * 119.80754 * 179.73671 * 9 8 3 11 11 C 1.41219 * 120.17398 * 180.29451 * 10 9 8 12 12 H 1.07998 * 120.00678 * 330.41050 * 11 10 9 13 13 C 1.39892 * 119.99892 * 150.40939 * 11 10 9 14 14 N 1.30879 * 120.00254 * 161.71426 * 13 11 10 15 15 Si 1.86799 * 119.99773 * 341.71484 * 13 11 10 16 16 H 1.48498 * 109.47390 * 95.41389 * 15 13 11 17 17 H 1.48507 * 109.47048 * 215.41492 * 15 13 11 18 18 H 1.48504 * 109.47301 * 335.41300 * 15 13 11 19 19 C 1.40849 * 119.64453 * 0.53427 * 10 9 8 20 20 C 1.36419 * 119.81024 * 359.73797 * 19 10 9 21 21 C 1.39297 * 119.90420 * 239.99946 * 8 3 2 22 22 O 1.35671 * 119.82209 * 359.97438 * 21 8 3 23 23 H 1.09005 * 109.47048 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46605 * 299.99790 * 1 2 3 25 25 H 1.08994 * 109.46791 * 59.99838 * 1 2 3 26 26 H 1.09006 * 109.46955 * 240.00065 * 2 1 3 27 27 H 1.08997 * 109.47216 * 120.00446 * 2 1 3 28 28 H 0.96699 * 117.00298 * 180.27825 * 7 5 3 29 29 H 1.08003 * 120.09675 * 359.97438 * 9 8 3 30 30 H 0.96994 * 120.00212 * 180.02562 * 14 13 11 31 31 H 1.08002 * 120.09194 * 179.71537 * 19 10 9 32 32 H 1.08000 * 119.90661 * 179.97438 * 20 19 10 33 33 H 0.96704 * 113.99918 * 89.99179 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1239 6 8 4.2191 1.9416 0.7444 7 8 4.1276 0.8885 -1.1962 8 6 1.6414 2.1162 1.2877 9 6 2.0677 1.6097 2.4809 10 6 1.6986 2.2442 3.6826 11 6 2.1406 1.7302 4.9215 12 1 2.3272 0.6722 5.0316 13 6 2.3367 2.5916 6.0061 14 7 2.3926 2.1107 7.2221 15 14 2.5189 4.4284 5.7190 16 1 1.2019 5.0905 5.8982 17 1 3.4907 4.9877 6.6928 18 1 3.0092 4.6673 4.3377 19 6 0.8820 3.3911 3.6426 20 6 0.4597 3.8814 2.4416 21 6 0.8341 3.2509 1.2568 22 8 0.4103 3.7453 0.0666 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 5.0938 0.9102 -1.2293 29 1 2.6897 0.7270 2.5033 30 1 2.5283 2.7080 7.9741 31 1 0.5907 3.8808 4.5601 32 1 -0.1668 4.7605 2.4091 33 1 -0.4320 3.3778 -0.2345 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309504038.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:47 Heat of formation + Delta-G solvation = -130.302847 kcal Electronic energy + Delta-G solvation = -18562.809521 eV Core-core repulsion = 15552.897399 eV Total energy + Delta-G solvation = -3009.912121 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.23247 -38.57811 -35.97586 -35.73614 -34.95358 -33.21159 -30.07993 -29.69207 -27.31773 -24.74596 -22.36775 -22.27966 -20.80364 -19.74331 -17.82483 -17.48787 -17.08761 -16.16693 -15.61438 -15.26096 -14.66484 -14.46909 -14.05871 -13.48204 -13.34374 -12.90486 -12.53793 -12.47502 -12.12592 -11.87776 -11.69080 -11.30290 -11.23956 -10.96378 -10.80974 -10.61604 -10.34974 -10.06186 -10.02702 -9.92059 -9.37827 -9.09814 -7.80728 -7.44917 -6.99664 -4.48866 2.34730 2.53923 2.61404 3.09305 3.21175 3.33618 3.47369 3.98113 4.36797 4.98434 5.09819 5.21122 5.28147 5.44130 5.63904 5.76623 5.80318 5.99926 6.02702 6.15172 6.31368 6.42910 6.48709 6.73652 6.77389 6.80656 7.02617 7.26182 7.39560 7.61650 7.77381 7.90908 8.26263 8.26948 8.43176 8.69735 8.77312 10.02166 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.023808 B = 0.007904 C = 0.007376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.811653 B = 3541.611858 C = 3794.966733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.030 4.030 4 H 0.112 0.888 5 C 0.476 3.524 6 O -0.492 6.492 7 O -0.524 6.524 8 C -0.059 4.059 9 C -0.161 4.161 10 C 0.089 3.911 11 C -0.438 4.438 12 H 0.091 0.909 13 C 0.084 3.916 14 N -0.805 5.805 15 Si 0.909 3.091 16 H -0.270 1.270 17 H -0.290 1.290 18 H -0.242 1.242 19 C -0.227 4.227 20 C -0.091 4.091 21 C -0.035 4.035 22 O -0.499 6.499 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.402 0.598 29 H 0.101 0.899 30 H 0.286 0.714 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 -1.999 -11.863 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.050 4.050 4 H 0.130 0.870 5 C 0.317 3.683 6 O -0.377 6.377 7 O -0.337 6.337 8 C -0.060 4.060 9 C -0.180 4.180 10 C 0.086 3.914 11 C -0.466 4.466 12 H 0.109 0.891 13 C -0.135 4.135 14 N -0.428 5.428 15 Si 0.735 3.265 16 H -0.196 1.196 17 H -0.217 1.217 18 H -0.165 1.165 19 C -0.246 4.246 20 C -0.110 4.110 21 C -0.079 4.079 22 O -0.305 6.305 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.260 0.740 29 H 0.119 0.881 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -1.834 -1.560 -11.247 11.502 hybrid contribution 0.370 0.615 0.119 0.728 sum -1.464 -0.945 -11.127 11.263 Atomic orbital electron populations 1.21732 0.94758 1.01596 1.02437 1.21523 0.97086 0.93450 1.02724 1.19861 0.86811 0.98609 0.99669 0.87020 1.23607 0.92335 0.74077 0.78305 1.90780 1.65508 1.41410 1.39999 1.84536 1.28124 1.75011 1.45993 1.18814 0.99916 0.94896 0.92352 1.20384 1.03926 1.02759 0.90929 1.17715 0.89747 0.90920 0.93064 1.19460 1.37711 0.97237 0.92238 0.89059 1.26164 0.91251 1.02039 0.94052 1.69711 1.34385 1.39104 0.99636 0.86339 0.78435 0.81326 0.80390 1.19600 1.21688 1.16491 1.20725 1.05600 1.02183 0.96113 1.20572 0.99647 0.98533 0.92245 1.17653 1.07867 0.98385 0.84011 1.84851 1.41358 1.67840 1.36485 0.92666 0.91591 0.92868 0.91184 0.91055 0.73979 0.88107 0.90353 0.87860 0.88159 0.79412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.73 37.16 0.36 -1.50 16 2 C -0.11 -1.54 5.25 -26.73 -0.14 -1.68 16 3 C -0.03 -0.51 2.44 -92.92 -0.23 -0.74 16 4 H 0.11 1.73 6.98 -51.93 -0.36 1.37 16 5 C 0.48 8.32 7.49 36.01 0.27 8.59 16 6 O -0.49 -10.67 15.87 -18.74 -0.30 -10.97 16 7 O -0.52 -6.89 13.22 -39.25 -0.52 -7.40 16 8 C -0.06 -1.22 3.37 -104.87 -0.35 -1.58 16 9 C -0.16 -3.76 7.56 -39.25 -0.30 -4.05 16 10 C 0.09 2.26 5.10 -106.80 -0.55 1.71 16 11 C -0.44 -11.90 9.56 -37.83 -0.36 -12.26 16 12 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 13 C 0.08 2.23 5.40 -17.34 -0.09 2.14 16 14 N -0.80 -21.46 13.93 55.54 0.77 -20.68 16 15 Si 0.91 21.35 24.51 -169.99 -4.17 17.18 16 16 H -0.27 -6.06 6.70 56.52 0.38 -5.68 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.24 -6.02 6.87 56.52 0.39 -5.63 16 19 C -0.23 -5.50 7.12 -39.25 -0.28 -5.77 16 20 C -0.09 -2.02 9.92 -39.83 -0.40 -2.41 16 21 C -0.03 -0.72 6.70 -38.78 -0.26 -0.98 16 22 O -0.50 -8.93 12.23 -18.71 -0.23 -9.15 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.96 7.38 -51.93 -0.38 0.58 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.85 7.99 -51.93 -0.41 0.43 16 27 H 0.07 1.08 7.19 -51.93 -0.37 0.71 16 28 H 0.40 3.56 9.10 45.56 0.41 3.97 16 29 H 0.10 2.33 7.43 -52.48 -0.39 1.94 16 30 H 0.29 6.91 8.30 -40.82 -0.34 6.57 16 31 H 0.10 2.48 4.73 -52.49 -0.25 2.24 16 32 H 0.10 1.98 8.06 -52.49 -0.42 1.55 16 33 H 0.35 4.63 9.06 45.56 0.41 5.04 16 LS Contribution 280.65 15.07 4.23 4.23 Total: -1.00 -31.17 280.65 -4.74 -35.91 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -2.21 Total: 9.43 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -2.32 Total: -18.54 kcal Atomic # 7 Polarization: -21.46 SS G_CDS: 0.77 Total: -20.68 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -1.05 Total: -27.53 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.17 Total: 17.18 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.17 -4.74 -35.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309504038.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.392 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds