Wall clock time and date at job start Mon Mar 30 2020 06:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47274 * 2 1 4 4 H 1.09006 * 109.46880 * 305.00342 * 3 2 1 5 5 C 1.50702 * 109.47499 * 185.00189 * 3 2 1 6 6 O 1.20818 * 120.00126 * 240.00292 * 5 3 2 7 7 O 1.34226 * 119.99849 * 59.72384 * 5 3 2 8 8 C 1.50703 * 109.47079 * 65.00097 * 3 2 1 9 9 C 1.36449 * 119.90663 * 59.72840 * 8 3 2 10 10 C 1.40817 * 119.80754 * 179.73671 * 9 8 3 11 11 C 1.41219 * 120.17398 * 180.29451 * 10 9 8 12 12 H 1.07998 * 120.00678 * 330.41050 * 11 10 9 13 13 C 1.39892 * 119.99892 * 150.40939 * 11 10 9 14 14 N 1.30879 * 120.00254 * 161.71426 * 13 11 10 15 15 Si 1.86799 * 119.99773 * 341.71484 * 13 11 10 16 16 H 1.48498 * 109.47390 * 95.41389 * 15 13 11 17 17 H 1.48507 * 109.47048 * 215.41492 * 15 13 11 18 18 H 1.48504 * 109.47301 * 335.41300 * 15 13 11 19 19 C 1.40849 * 119.64453 * 0.53427 * 10 9 8 20 20 C 1.36419 * 119.81024 * 359.73797 * 19 10 9 21 21 C 1.39297 * 119.90420 * 239.99946 * 8 3 2 22 22 O 1.35671 * 119.82209 * 359.97438 * 21 8 3 23 23 H 1.09005 * 109.47048 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46605 * 299.99790 * 1 2 3 25 25 H 1.08994 * 109.46791 * 59.99838 * 1 2 3 26 26 H 1.09006 * 109.46955 * 240.00065 * 2 1 3 27 27 H 1.08997 * 109.47216 * 120.00446 * 2 1 3 28 28 H 0.96699 * 117.00298 * 180.27825 * 7 5 3 29 29 H 1.08003 * 120.09675 * 359.97438 * 9 8 3 30 30 H 0.96994 * 120.00212 * 180.02562 * 14 13 11 31 31 H 1.08002 * 120.09194 * 179.71537 * 19 10 9 32 32 H 1.08000 * 119.90661 * 179.97438 * 20 19 10 33 33 H 0.96704 * 113.99918 * 89.99179 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1239 6 8 4.2191 1.9416 0.7444 7 8 4.1276 0.8885 -1.1962 8 6 1.6414 2.1162 1.2877 9 6 2.0677 1.6097 2.4809 10 6 1.6986 2.2442 3.6826 11 6 2.1406 1.7302 4.9215 12 1 2.3272 0.6722 5.0316 13 6 2.3367 2.5916 6.0061 14 7 2.3926 2.1107 7.2221 15 14 2.5189 4.4284 5.7190 16 1 1.2019 5.0905 5.8982 17 1 3.4907 4.9877 6.6928 18 1 3.0092 4.6673 4.3377 19 6 0.8820 3.3911 3.6426 20 6 0.4597 3.8814 2.4416 21 6 0.8341 3.2509 1.2568 22 8 0.4103 3.7453 0.0666 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 5.0938 0.9102 -1.2293 29 1 2.6897 0.7270 2.5033 30 1 2.5283 2.7080 7.9741 31 1 0.5907 3.8808 4.5601 32 1 -0.1668 4.7605 2.4091 33 1 -0.4320 3.3778 -0.2345 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309504038.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:47 Heat of formation + Delta-G solvation = -153.505052 kcal Electronic energy + Delta-G solvation = -18563.815644 eV Core-core repulsion = 15552.897399 eV Total energy + Delta-G solvation = -3010.918244 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.66239 -40.18292 -37.60199 -37.08106 -36.33627 -35.06134 -31.56325 -31.52523 -28.73514 -26.59878 -23.90711 -23.52313 -22.57141 -21.25601 -19.35079 -19.05175 -18.75686 -17.54197 -17.35311 -16.76339 -16.19618 -16.06837 -15.58352 -15.07138 -14.76281 -14.54757 -14.17236 -14.01901 -13.72618 -13.39544 -13.02927 -12.90832 -12.66973 -12.54609 -12.21103 -12.08838 -11.99060 -11.84833 -11.62488 -11.34816 -11.21068 -10.83751 -9.57540 -9.26893 -8.94424 -6.48939 0.59739 0.74044 1.20788 1.25419 1.35400 1.44617 2.07251 2.17514 2.55268 3.37680 3.62014 3.70186 3.93793 4.14189 4.28519 4.46565 4.52139 4.61081 4.67956 4.89774 4.94224 5.01328 5.12614 5.22546 5.28781 5.45548 5.49917 5.60636 5.65686 5.81196 5.86482 6.12523 6.29257 6.62272 6.76188 7.04659 7.20503 8.14198 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.023808 B = 0.007904 C = 0.007376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.811653 B = 3541.611858 C = 3794.966733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.031 4.031 4 H 0.137 0.863 5 C 0.482 3.518 6 O -0.545 6.545 7 O -0.505 6.505 8 C -0.059 4.059 9 C -0.169 4.169 10 C 0.066 3.934 11 C -0.479 4.479 12 H 0.057 0.943 13 C 0.051 3.949 14 N -0.845 5.845 15 Si 0.959 3.041 16 H -0.251 1.251 17 H -0.276 1.276 18 H -0.265 1.265 19 C -0.235 4.235 20 C -0.104 4.104 21 C -0.005 4.005 22 O -0.496 6.496 23 H 0.070 0.930 24 H 0.039 0.961 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.050 0.950 28 H 0.424 0.576 29 H 0.090 0.910 30 H 0.294 0.706 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.325 -0.969 -15.279 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.050 4.050 4 H 0.154 0.846 5 C 0.325 3.675 6 O -0.434 6.434 7 O -0.318 6.318 8 C -0.060 4.060 9 C -0.188 4.188 10 C 0.063 3.937 11 C -0.509 4.509 12 H 0.075 0.925 13 C -0.164 4.164 14 N -0.472 5.472 15 Si 0.783 3.217 16 H -0.176 1.176 17 H -0.202 1.202 18 H -0.189 1.189 19 C -0.254 4.254 20 C -0.123 4.123 21 C -0.050 4.050 22 O -0.306 6.306 23 H 0.089 0.911 24 H 0.058 0.942 25 H 0.097 0.903 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.285 0.715 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.147 0.853 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -3.001 -0.554 -14.703 15.016 hybrid contribution 0.665 0.244 0.780 1.053 sum -2.336 -0.310 -13.923 14.121 Atomic orbital electron populations 1.21729 0.93420 1.02783 1.02335 1.21537 0.98189 0.91496 1.03108 1.19967 0.86829 1.00223 0.97957 0.84590 1.23692 0.92568 0.73048 0.78199 1.90784 1.66636 1.43982 1.41989 1.84462 1.30143 1.73574 1.43632 1.19141 0.98790 0.94721 0.93314 1.20419 1.04110 1.02694 0.91626 1.17876 0.90546 0.92139 0.93104 1.19411 1.41279 0.96046 0.94152 0.92457 1.26725 0.90926 1.05088 0.93688 1.69730 1.36792 1.40422 1.00240 0.85583 0.79375 0.77721 0.79014 1.17563 1.20202 1.18896 1.20807 1.05543 1.01827 0.97234 1.20918 0.99942 0.99626 0.91773 1.17787 1.05669 0.96692 0.84836 1.84747 1.43427 1.67869 1.34561 0.91069 0.94156 0.90303 0.88348 0.93125 0.71450 0.89173 0.89522 0.88051 0.85252 0.75629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.73 71.98 0.70 -2.45 16 2 C -0.11 -2.65 5.25 30.59 0.16 -2.49 16 3 C -0.03 -0.94 2.44 -12.29 -0.03 -0.97 16 4 H 0.14 3.52 6.98 -2.38 -0.02 3.50 16 5 C 0.48 15.78 7.49 71.24 0.53 16.31 16 6 O -0.54 -23.37 15.87 21.99 0.35 -23.03 16 7 O -0.50 -11.49 13.22 -51.38 -0.68 -12.17 16 8 C -0.06 -2.35 3.37 -20.03 -0.07 -2.42 16 9 C -0.17 -8.07 7.56 22.48 0.17 -7.90 16 10 C 0.07 3.47 5.10 -21.28 -0.11 3.36 16 11 C -0.48 -27.76 9.56 23.40 0.22 -27.54 16 12 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 13 C 0.05 2.80 5.40 85.24 0.46 3.26 16 14 N -0.85 -47.31 13.93 21.82 0.30 -47.01 16 15 Si 0.96 44.87 24.51 68.60 1.68 46.55 16 16 H -0.25 -10.80 6.70 99.48 0.67 -10.13 16 17 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.26 -13.21 6.87 99.48 0.68 -12.53 16 19 C -0.23 -11.33 7.12 22.48 0.16 -11.17 16 20 C -0.10 -4.35 9.92 22.11 0.22 -4.13 16 21 C 0.00 -0.19 6.70 22.79 0.15 -0.03 16 22 O -0.50 -15.15 12.23 -89.88 -1.10 -16.25 16 23 H 0.07 1.32 8.14 -2.38 -0.02 1.31 16 24 H 0.04 1.08 7.38 -2.39 -0.02 1.06 16 25 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.10 1.95 7.99 -2.38 -0.02 1.93 16 27 H 0.05 1.48 7.19 -2.39 -0.02 1.47 16 28 H 0.42 6.13 9.10 -74.06 -0.67 5.46 16 29 H 0.09 4.40 7.43 -2.91 -0.02 4.37 16 30 H 0.29 14.77 8.30 -92.71 -0.77 14.00 16 31 H 0.10 4.86 4.73 -2.91 -0.01 4.85 16 32 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 33 H 0.39 7.70 9.06 -74.05 -0.67 7.03 16 Total: -1.00 -70.63 280.65 2.88 -67.75 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -0.25 Total: 20.34 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 2.57 Total: -36.18 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.30 Total: -47.01 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -1.43 Total: -51.45 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.68 Total: 46.55 kcal Total: -70.63 2.88 -67.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309504038.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.751 kcal (2) G-P(sol) polarization free energy of solvation -70.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds