Wall clock time and date at job start Mon Mar 30 2020 06:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38219 * 120.01346 * 2 1 4 4 C 1.38225 * 120.02348 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.97090 * 180.02562 * 4 3 2 6 6 H 1.08999 * 110.33249 * 337.75234 * 5 4 3 7 7 C 1.54477 * 110.36871 * 100.00469 * 5 4 3 8 8 C 1.54507 * 104.06510 * 142.80899 * 7 5 4 9 9 C 1.54483 * 104.06211 * 359.97438 * 8 7 5 10 10 H 1.09002 * 110.37322 * 94.85326 * 9 8 7 11 11 C 1.50699 * 110.37332 * 217.08025 * 9 8 7 12 12 H 1.08001 * 120.00025 * 358.44931 * 11 9 8 13 13 C 1.37876 * 119.99873 * 178.44761 * 11 9 8 14 14 N 1.31512 * 120.00296 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99978 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47168 * 60.00148 * 15 13 11 17 17 H 1.48494 * 109.47393 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47215 * 300.00301 * 15 13 11 19 19 O 1.44428 * 104.89902 * 335.96812 * 9 8 7 20 20 C 1.38271 * 120.05466 * 0.29913 * 4 3 2 21 21 C 1.38179 * 120.02112 * 359.44293 * 20 4 3 22 22 C 1.38440 * 120.01143 * 180.02562 * 2 1 3 23 23 F 1.35098 * 120.02858 * 0.02562 * 22 2 1 24 24 H 1.08996 * 109.47181 * 90.00201 * 1 2 3 25 25 H 1.08998 * 109.47262 * 210.00568 * 1 2 3 26 26 H 1.08996 * 109.47065 * 330.00254 * 1 2 3 27 27 H 1.07996 * 119.99141 * 0.02562 * 3 2 1 28 28 H 1.09000 * 110.51486 * 24.16342 * 7 5 4 29 29 H 1.09000 * 110.62726 * 261.50960 * 7 5 4 30 30 H 1.09005 * 110.51421 * 241.35469 * 8 7 5 31 31 H 1.09001 * 110.51335 * 118.64380 * 8 7 5 32 32 H 0.97002 * 119.99918 * 180.02562 * 14 13 11 33 33 H 1.07996 * 119.98628 * 179.72442 * 20 4 3 34 34 H 1.07995 * 120.01259 * 180.27377 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3332 2.5027 0.0011 6 1 3.7030 3.3034 -0.3859 7 6 4.8192 2.8426 1.4275 8 6 6.2069 3.4855 1.2082 9 6 6.3956 3.4575 -0.3248 10 1 6.0832 4.4054 -0.7630 11 6 7.8336 3.1692 -0.6712 12 1 8.5634 3.0423 0.1147 13 6 8.2175 3.0672 -1.9915 14 7 7.3289 3.2221 -2.9486 15 14 10.0001 2.7105 -2.4210 16 1 10.4009 1.4088 -1.8294 17 1 10.1514 2.6515 -3.8970 18 1 10.8654 3.7884 -1.8779 19 8 5.5431 2.3860 -0.7843 20 6 4.2733 0.0004 -0.0052 21 6 3.5843 -1.1973 0.0002 22 6 2.1994 -1.1988 -0.0005 23 9 1.5248 -2.3692 -0.0016 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6585 2.1322 0.0004 28 1 4.9085 1.9364 2.0267 29 1 4.1417 3.5501 1.9056 30 1 6.9823 2.8972 1.6989 31 1 6.2148 4.5117 1.5757 32 1 7.5990 3.1501 -3.8774 33 1 5.3533 0.0019 -0.0093 34 1 4.1255 -2.1318 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390463763.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:02 Heat of formation + Delta-G solvation = -95.660077 kcal Electronic energy + Delta-G solvation = -17967.182097 eV Core-core repulsion = 14971.144989 eV Total energy + Delta-G solvation = -2996.037108 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.90035 -40.73882 -39.15643 -34.85646 -33.80694 -32.75449 -32.32892 -29.48850 -27.83029 -26.39541 -23.77413 -23.46978 -21.87663 -21.06739 -18.84189 -18.48721 -17.64109 -16.82957 -16.78203 -16.63174 -16.14142 -15.59616 -15.23405 -14.60655 -14.38276 -14.25212 -14.17461 -14.05537 -13.79521 -13.44971 -13.08768 -12.80193 -12.76248 -12.43433 -12.20816 -11.94947 -11.90722 -11.84196 -11.35404 -11.05162 -10.72014 -10.11233 -9.85631 -9.41100 -8.16704 -6.36852 0.13429 0.26798 1.40885 1.43541 1.51155 2.40322 2.54571 3.06159 3.26869 3.52679 3.77792 3.84755 3.88323 4.06600 4.20320 4.34460 4.36457 4.48365 4.60367 4.69928 4.77837 4.80167 4.91790 5.02333 5.03793 5.08839 5.21972 5.24035 5.25535 5.35805 5.50593 5.67289 5.73774 5.94538 6.15553 6.53189 6.90618 7.38726 8.91606 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.030418 B = 0.005534 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.301381 B = 5058.499437 C = 5482.827858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.119 4.119 3 C -0.087 4.087 4 C -0.084 4.084 5 C 0.092 3.908 6 H 0.064 0.936 7 C -0.130 4.130 8 C -0.139 4.139 9 C 0.196 3.804 10 H -0.005 1.005 11 C -0.552 4.552 12 H 0.066 0.934 13 C 0.023 3.977 14 N -0.904 5.904 15 Si 0.961 3.039 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.263 1.263 19 O -0.377 6.377 20 C -0.087 4.087 21 C -0.153 4.153 22 C 0.075 3.925 23 F -0.142 7.142 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.155 0.845 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.262 0.738 33 H 0.118 0.882 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.800 -4.831 7.826 14.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.120 4.120 3 C -0.105 4.105 4 C -0.084 4.084 5 C 0.034 3.966 6 H 0.082 0.918 7 C -0.167 4.167 8 C -0.177 4.177 9 C 0.140 3.860 10 H 0.013 0.987 11 C -0.589 4.589 12 H 0.084 0.916 13 C -0.179 4.179 14 N -0.541 5.541 15 Si 0.785 3.215 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.187 1.187 19 O -0.297 6.297 20 C -0.105 4.105 21 C -0.172 4.172 22 C 0.056 3.944 23 F -0.121 7.121 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.110 0.890 27 H 0.173 0.827 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.812 -5.023 7.481 14.857 hybrid contribution 1.063 -0.222 -0.531 1.209 sum -10.750 -5.246 6.949 13.834 Atomic orbital electron populations 1.20774 0.87839 1.04320 1.03599 1.20157 0.98504 0.91011 1.02351 1.20945 0.92182 0.98433 0.98943 1.19941 0.94151 0.94456 0.99856 1.21900 0.88998 0.93422 0.92270 0.91775 1.22873 0.96637 1.01347 0.95855 1.22932 0.96789 1.00762 0.97192 1.20433 0.89722 0.86242 0.89575 0.98720 1.21449 0.93362 1.51531 0.92562 0.91553 1.25956 1.01817 0.93636 0.96504 1.70162 1.35740 1.48234 0.99968 0.85593 0.79708 0.79201 0.77017 1.19539 1.20922 1.18711 1.89512 1.26088 1.53308 1.60818 1.20873 1.00417 0.91499 0.97702 1.21240 0.92574 0.99723 1.03634 1.17652 0.89994 0.81277 1.05486 1.91441 1.80326 1.46159 1.94189 0.90066 0.90941 0.88970 0.82722 0.90988 0.88650 0.92059 0.90694 0.92930 0.86415 0.83585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 9.84 71.24 0.70 -1.27 16 2 C -0.12 -3.07 5.89 -19.82 -0.12 -3.18 16 3 C -0.09 -2.41 9.34 22.26 0.21 -2.20 16 4 C -0.08 -2.89 4.92 -19.86 -0.10 -2.99 16 5 C 0.09 3.61 3.50 30.35 0.11 3.71 16 6 H 0.06 2.40 8.06 -2.39 -0.02 2.38 16 7 C -0.13 -4.34 6.62 31.61 0.21 -4.13 16 8 C -0.14 -5.56 6.62 31.61 0.21 -5.35 16 9 C 0.20 10.19 3.08 30.35 0.09 10.28 16 10 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 11 C -0.55 -31.20 8.78 25.60 0.22 -30.98 16 12 H 0.07 3.59 7.58 -2.91 -0.02 3.57 16 13 C 0.02 1.31 5.42 84.65 0.46 1.77 16 14 N -0.90 -55.02 13.00 21.45 0.28 -54.74 16 15 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 19 O -0.38 -19.65 9.88 -148.98 -1.47 -21.12 16 20 C -0.09 -3.08 9.36 22.26 0.21 -2.87 16 21 C -0.15 -4.66 10.03 22.31 0.22 -4.44 16 22 C 0.07 2.14 7.24 22.38 0.16 2.30 16 23 F -0.14 -3.90 16.48 44.97 0.74 -3.16 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.25 7.64 -2.39 -0.02 1.23 16 26 H 0.09 1.29 8.09 -2.39 -0.02 1.27 16 27 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 28 H 0.07 2.30 7.86 -2.39 -0.02 2.28 16 29 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.06 2.47 7.72 -2.38 -0.02 2.45 16 31 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.12 4.68 7.66 -2.91 -0.02 4.66 16 34 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -66.12 292.44 5.25 -60.87 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.09 Total: 11.40 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 2.59 Total: -39.36 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.28 Total: -54.74 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -1.47 Total: -21.12 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.74 Total: -3.16 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -66.12 5.25 -60.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390463763.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.792 kcal (2) G-P(sol) polarization free energy of solvation -66.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds