Wall clock time and date at job start Mon Mar 30 2020 06:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38220 * 120.01290 * 2 1 4 4 C 1.38232 * 120.02521 * 179.97438 * 3 2 1 5 5 C 1.50692 * 119.97309 * 179.97438 * 4 3 2 6 6 H 1.09000 * 110.55390 * 27.87954 * 5 4 3 7 7 C 1.54992 * 110.62062 * 264.99549 * 5 4 3 8 8 C 1.54808 * 102.09663 * 204.47557 * 7 5 4 9 9 C 1.54103 * 104.18578 * 20.88343 * 8 7 5 10 10 H 1.09002 * 109.87915 * 242.60324 * 9 8 7 11 11 C 1.50698 * 109.87783 * 121.60033 * 9 8 7 12 12 H 1.07999 * 120.00087 * 0.31105 * 11 9 8 13 13 C 1.37883 * 119.99913 * 180.30135 * 11 9 8 14 14 N 1.31513 * 120.00186 * 180.02562 * 13 11 9 15 15 Si 1.86800 * 119.99785 * 0.02562 * 13 11 9 16 16 H 1.48495 * 109.47366 * 89.99516 * 15 13 11 17 17 H 1.48507 * 109.46746 * 209.99387 * 15 13 11 18 18 H 1.48503 * 109.47197 * 329.99075 * 15 13 11 19 19 O 1.43750 * 107.41924 * 2.10301 * 9 8 7 20 20 C 1.38268 * 120.05009 * 0.25551 * 4 3 2 21 21 C 1.38181 * 120.02499 * 359.48956 * 20 4 3 22 22 C 1.38444 * 120.01387 * 179.97438 * 2 1 3 23 23 F 1.35102 * 120.02252 * 359.97438 * 22 2 1 24 24 H 1.09000 * 109.47978 * 89.99668 * 1 2 3 25 25 H 1.09001 * 109.47289 * 209.99922 * 1 2 3 26 26 H 1.09001 * 109.46847 * 329.99664 * 1 2 3 27 27 H 1.07997 * 119.98875 * 359.96285 * 3 2 1 28 28 H 1.09007 * 110.90687 * 86.27698 * 7 5 4 29 29 H 1.09004 * 110.94169 * 322.69167 * 7 5 4 30 30 H 1.08992 * 110.49201 * 262.20655 * 8 7 5 31 31 H 1.09007 * 110.48703 * 139.55607 * 8 7 5 32 32 H 0.96990 * 120.00120 * 180.02562 * 14 13 11 33 33 H 1.07997 * 119.98454 * 179.74906 * 20 4 3 34 34 H 1.07999 * 120.01362 * 180.23085 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3332 2.5027 0.0000 6 1 3.7425 3.2851 0.4765 7 6 4.7160 2.9114 -1.4453 8 6 5.9444 3.8236 -1.2098 9 6 6.4500 3.4224 0.1895 10 1 6.3791 4.2733 0.8672 11 6 7.8798 2.9542 0.1030 12 1 8.3883 2.9450 -0.8498 13 6 8.5389 2.5378 1.2402 14 7 9.7868 2.1296 1.1649 15 14 7.6592 2.5533 2.8881 16 1 6.9841 1.2479 3.1012 17 1 8.6459 2.7834 3.9738 18 1 6.6482 3.6410 2.8993 19 8 5.6128 2.3524 0.6592 20 6 4.2733 0.0005 -0.0043 21 6 3.5842 -1.1973 0.0011 22 6 2.1994 -1.1988 0.0005 23 9 1.5247 -2.3692 0.0016 24 1 -0.3635 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6583 2.1322 -0.0006 28 1 3.9059 3.4649 -1.9205 29 1 4.9879 2.0381 -2.0381 30 1 5.6488 4.8726 -1.2224 31 1 6.7107 3.6332 -1.9614 32 1 10.2503 1.8363 1.9648 33 1 5.3532 0.0020 -0.0079 34 1 4.1254 -2.1318 0.0011 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390463764.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:04 Heat of formation + Delta-G solvation = -75.340298 kcal Electronic energy + Delta-G solvation = -18104.812032 eV Core-core repulsion = 15109.656055 eV Total energy + Delta-G solvation = -2995.155977 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.80284 -39.52085 -37.90569 -33.09464 -32.50378 -31.52458 -30.97477 -28.25335 -26.84416 -24.61341 -22.53193 -22.11190 -20.08481 -19.94470 -17.43302 -17.22637 -16.45625 -15.60056 -15.54754 -15.19132 -14.40779 -14.11844 -13.90492 -13.46501 -13.18579 -13.11634 -12.93822 -12.67641 -12.56092 -12.14462 -12.02609 -11.52560 -11.05633 -10.83372 -10.80465 -10.61196 -10.34235 -9.92911 -9.77032 -9.50031 -8.78794 -8.65277 -8.49351 -8.22225 -6.13250 -4.22164 1.26910 1.36767 3.39902 3.45674 3.55806 3.68865 4.36373 4.44511 4.55870 4.78612 4.89768 5.06466 5.25102 5.34486 5.39179 5.47174 5.51488 5.55554 5.57272 5.75324 5.89439 5.95612 6.11227 6.12896 6.23638 6.35441 6.41429 6.51199 6.56971 6.61690 6.85020 7.05829 7.13531 7.58228 8.09205 8.40266 8.87205 9.49839 10.97057 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.028040 B = 0.006388 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.343323 B = 4382.056157 C = 4808.035344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.127 4.127 3 C -0.091 4.091 4 C -0.075 4.075 5 C 0.107 3.893 6 H 0.066 0.934 7 C -0.138 4.138 8 C -0.136 4.136 9 C 0.163 3.837 10 H 0.031 0.969 11 C -0.519 4.519 12 H 0.079 0.921 13 C 0.083 3.917 14 N -0.892 5.892 15 Si 0.899 3.101 16 H -0.274 1.274 17 H -0.299 1.299 18 H -0.267 1.267 19 O -0.374 6.374 20 C -0.066 4.066 21 C -0.152 4.152 22 C 0.085 3.915 23 F -0.145 7.145 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.129 0.871 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.266 0.734 33 H 0.147 0.853 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.574 -2.185 -3.035 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.128 4.128 3 C -0.109 4.109 4 C -0.075 4.075 5 C 0.049 3.951 6 H 0.084 0.916 7 C -0.176 4.176 8 C -0.173 4.173 9 C 0.108 3.892 10 H 0.049 0.951 11 C -0.556 4.556 12 H 0.097 0.903 13 C -0.121 4.121 14 N -0.530 5.530 15 Si 0.728 3.272 16 H -0.199 1.199 17 H -0.226 1.226 18 H -0.191 1.191 19 O -0.295 6.295 20 C -0.084 4.084 21 C -0.171 4.171 22 C 0.066 3.934 23 F -0.123 7.123 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.147 0.853 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.164 0.836 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.385 -2.449 -2.794 16.801 hybrid contribution -0.436 -0.188 0.757 0.894 sum -16.820 -2.637 -2.036 17.147 Atomic orbital electron populations 1.20669 0.90462 1.03000 1.02468 1.19775 0.96637 0.91862 1.04488 1.20676 0.93186 0.96970 1.00037 1.19930 0.93003 0.95476 0.99135 1.21807 0.88210 0.92126 0.92990 0.91593 1.23056 0.98064 1.00206 0.96276 1.22883 0.96599 0.97754 1.00094 1.20877 0.90988 0.87077 0.90238 0.95140 1.21119 0.92600 1.45476 0.96407 0.90275 1.25067 0.94320 0.92992 0.99758 1.69923 1.10664 1.42545 1.29837 0.86433 0.78714 0.79797 0.82249 1.19929 1.22606 1.19144 1.89132 1.20640 1.53185 1.66496 1.21119 1.01739 0.90318 0.95222 1.21188 0.91997 0.99984 1.03906 1.17547 0.90095 0.80702 1.05102 1.91441 1.80489 1.46248 1.94162 0.91117 0.91480 0.91155 0.85287 0.91619 0.90887 0.92613 0.90628 0.92463 0.83562 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.84 36.00 0.35 -0.75 16 2 C -0.13 -1.68 5.89 -104.56 -0.62 -2.30 16 3 C -0.09 -1.24 9.36 -39.59 -0.37 -1.61 16 4 C -0.08 -1.23 5.09 -104.62 -0.53 -1.76 16 5 C 0.11 1.90 3.55 -26.83 -0.10 1.81 16 6 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 7 C -0.14 -2.27 6.57 -24.73 -0.16 -2.43 16 8 C -0.14 -2.57 6.63 -25.20 -0.17 -2.74 16 9 C 0.16 3.84 2.70 -27.31 -0.07 3.77 16 10 H 0.03 0.74 7.17 -51.93 -0.37 0.37 16 11 C -0.52 -14.50 9.36 -34.44 -0.32 -14.82 16 12 H 0.08 2.35 7.58 -52.49 -0.40 1.95 16 13 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 14 N -0.89 -27.12 13.96 55.43 0.77 -26.34 16 15 Si 0.90 22.97 26.29 -169.99 -4.47 18.50 16 16 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 18 H -0.27 -6.61 6.52 56.52 0.37 -6.24 16 19 O -0.37 -8.56 7.83 -35.23 -0.28 -8.83 16 20 C -0.07 -1.12 9.37 -39.59 -0.37 -1.49 16 21 C -0.15 -2.30 10.03 -39.51 -0.40 -2.69 16 22 C 0.08 1.23 7.24 -39.42 -0.29 0.94 16 23 F -0.14 -2.06 16.48 2.25 0.04 -2.02 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.66 7.64 -51.93 -0.40 0.27 16 26 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.07 1.22 8.05 -51.93 -0.42 0.81 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.49 7.40 -51.92 -0.38 1.10 16 32 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.15 2.76 7.51 -52.49 -0.39 2.36 16 34 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 286.78 15.07 4.32 4.32 Total: -1.00 -30.46 286.78 -7.23 -37.69 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -4.49 Total: -1.54 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -3.14 Total: -21.76 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.77 Total: -26.34 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.28 Total: -8.83 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.47 Total: 18.50 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.46 -7.23 -37.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390463764.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.651 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds