Wall clock time and date at job start Mon Mar 30 2020 06:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38220 * 120.01290 * 2 1 4 4 C 1.38232 * 120.02521 * 179.97438 * 3 2 1 5 5 C 1.50692 * 119.97309 * 179.97438 * 4 3 2 6 6 H 1.09000 * 110.55390 * 27.87954 * 5 4 3 7 7 C 1.54992 * 110.62062 * 264.99549 * 5 4 3 8 8 C 1.54808 * 102.09663 * 204.47557 * 7 5 4 9 9 C 1.54103 * 104.18578 * 20.88343 * 8 7 5 10 10 H 1.09002 * 109.87915 * 242.60324 * 9 8 7 11 11 C 1.50698 * 109.87783 * 121.60033 * 9 8 7 12 12 H 1.07999 * 120.00087 * 0.31105 * 11 9 8 13 13 C 1.37883 * 119.99913 * 180.30135 * 11 9 8 14 14 N 1.31513 * 120.00186 * 180.02562 * 13 11 9 15 15 Si 1.86800 * 119.99785 * 0.02562 * 13 11 9 16 16 H 1.48495 * 109.47366 * 89.99516 * 15 13 11 17 17 H 1.48507 * 109.46746 * 209.99387 * 15 13 11 18 18 H 1.48503 * 109.47197 * 329.99075 * 15 13 11 19 19 O 1.43750 * 107.41924 * 2.10301 * 9 8 7 20 20 C 1.38268 * 120.05009 * 0.25551 * 4 3 2 21 21 C 1.38181 * 120.02499 * 359.48956 * 20 4 3 22 22 C 1.38444 * 120.01387 * 179.97438 * 2 1 3 23 23 F 1.35102 * 120.02252 * 359.97438 * 22 2 1 24 24 H 1.09000 * 109.47978 * 89.99668 * 1 2 3 25 25 H 1.09001 * 109.47289 * 209.99922 * 1 2 3 26 26 H 1.09001 * 109.46847 * 329.99664 * 1 2 3 27 27 H 1.07997 * 119.98875 * 359.96285 * 3 2 1 28 28 H 1.09007 * 110.90687 * 86.27698 * 7 5 4 29 29 H 1.09004 * 110.94169 * 322.69167 * 7 5 4 30 30 H 1.08992 * 110.49201 * 262.20655 * 8 7 5 31 31 H 1.09007 * 110.48703 * 139.55607 * 8 7 5 32 32 H 0.96990 * 120.00120 * 180.02562 * 14 13 11 33 33 H 1.07997 * 119.98454 * 179.74906 * 20 4 3 34 34 H 1.07999 * 120.01362 * 180.23085 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3332 2.5027 0.0000 6 1 3.7425 3.2851 0.4765 7 6 4.7160 2.9114 -1.4453 8 6 5.9444 3.8236 -1.2098 9 6 6.4500 3.4224 0.1895 10 1 6.3791 4.2733 0.8672 11 6 7.8798 2.9542 0.1030 12 1 8.3883 2.9450 -0.8498 13 6 8.5389 2.5378 1.2402 14 7 9.7868 2.1296 1.1649 15 14 7.6592 2.5533 2.8881 16 1 6.9841 1.2479 3.1012 17 1 8.6459 2.7834 3.9738 18 1 6.6482 3.6410 2.8993 19 8 5.6128 2.3524 0.6592 20 6 4.2733 0.0005 -0.0043 21 6 3.5842 -1.1973 0.0011 22 6 2.1994 -1.1988 0.0005 23 9 1.5247 -2.3692 0.0016 24 1 -0.3635 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6583 2.1322 -0.0006 28 1 3.9059 3.4649 -1.9205 29 1 4.9879 2.0381 -2.0381 30 1 5.6488 4.8726 -1.2224 31 1 6.7107 3.6332 -1.9614 32 1 10.2503 1.8363 1.9648 33 1 5.3532 0.0020 -0.0079 34 1 4.1254 -2.1318 0.0011 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390463764.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:04 Heat of formation + Delta-G solvation = -92.817394 kcal Electronic energy + Delta-G solvation = -18105.569896 eV Core-core repulsion = 15109.656055 eV Total energy + Delta-G solvation = -2995.913840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.92111 -40.83577 -39.33079 -34.88942 -33.87172 -32.97617 -32.48328 -29.86931 -27.84741 -26.31559 -23.80651 -23.43819 -21.72841 -21.24089 -19.30349 -18.52366 -17.70503 -17.11563 -16.73131 -16.64295 -16.11938 -15.74140 -15.18584 -14.75567 -14.48696 -14.30997 -14.28205 -14.04094 -14.02852 -13.52005 -13.11226 -12.92187 -12.77744 -12.54357 -12.10508 -11.98059 -11.93048 -11.67790 -11.53250 -11.29065 -10.85699 -10.27158 -9.87321 -9.43391 -8.36350 -6.48074 0.10231 0.24656 1.33832 1.41605 1.50207 2.35150 2.51002 2.87342 3.25224 3.41156 3.74465 3.78635 3.82570 3.99233 4.17661 4.29441 4.34188 4.40167 4.54082 4.63550 4.71416 4.79301 4.85849 5.00524 5.01512 5.06502 5.20466 5.22805 5.25005 5.33360 5.40050 5.56675 5.61295 5.92328 6.19712 6.38287 6.69039 7.27718 8.78017 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.028040 B = 0.006388 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.343323 B = 4382.056157 C = 4808.035344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.119 4.119 3 C -0.080 4.080 4 C -0.088 4.088 5 C 0.101 3.899 6 H 0.093 0.907 7 C -0.127 4.127 8 C -0.133 4.133 9 C 0.162 3.838 10 H 0.030 0.970 11 C -0.526 4.526 12 H 0.043 0.957 13 C 0.029 3.971 14 N -0.939 5.939 15 Si 0.959 3.041 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.250 1.250 19 O -0.401 6.401 20 C -0.091 4.091 21 C -0.157 4.157 22 C 0.076 3.924 23 F -0.144 7.144 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.165 0.835 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.268 0.732 33 H 0.114 0.886 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.435 -1.152 -2.850 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.119 4.119 3 C -0.098 4.098 4 C -0.088 4.088 5 C 0.043 3.957 6 H 0.111 0.889 7 C -0.164 4.164 8 C -0.171 4.171 9 C 0.106 3.894 10 H 0.048 0.952 11 C -0.563 4.563 12 H 0.062 0.938 13 C -0.171 4.171 14 N -0.579 5.579 15 Si 0.786 3.214 16 H -0.207 1.207 17 H -0.220 1.220 18 H -0.174 1.174 19 O -0.322 6.322 20 C -0.110 4.110 21 C -0.176 4.176 22 C 0.056 3.944 23 F -0.122 7.122 24 H 0.105 0.895 25 H 0.086 0.914 26 H 0.111 0.889 27 H 0.183 0.817 28 H 0.127 0.873 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.262 -1.407 -2.621 20.480 hybrid contribution 0.708 -0.562 0.609 1.090 sum -19.554 -1.970 -2.012 19.756 Atomic orbital electron populations 1.20779 0.87739 1.04190 1.03833 1.20188 0.98538 0.90988 1.02235 1.20959 0.91828 0.98581 0.98411 1.19937 0.94268 0.94272 1.00359 1.22138 0.86396 0.93767 0.93358 0.88930 1.23026 0.98003 0.99607 0.95778 1.22822 0.97298 1.00188 0.96762 1.20730 0.88865 0.86782 0.93029 0.95191 1.21458 0.95451 1.44559 0.94810 0.93841 1.25868 0.94870 0.92988 1.03327 1.70044 1.12337 1.44727 1.30826 0.85485 0.77895 0.79726 0.78304 1.20715 1.22015 1.17391 1.89023 1.23092 1.52873 1.67253 1.20913 1.00371 0.91842 0.97851 1.21229 0.92759 0.99713 1.03889 1.17690 0.89852 0.81452 1.05362 1.91444 1.80290 1.46329 1.94169 0.89514 0.91437 0.88909 0.81724 0.87263 0.92086 0.89478 0.92389 0.92344 0.86840 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 9.84 71.23 0.70 -0.99 16 2 C -0.12 -2.72 5.89 -19.82 -0.12 -2.83 16 3 C -0.08 -1.86 9.36 22.26 0.21 -1.65 16 4 C -0.09 -2.70 5.09 -19.86 -0.10 -2.80 16 5 C 0.10 3.32 3.55 30.53 0.11 3.43 16 6 H 0.09 2.58 8.10 -2.39 -0.02 2.56 16 7 C -0.13 -3.82 6.57 31.89 0.21 -3.61 16 8 C -0.13 -4.85 6.63 31.58 0.21 -4.64 16 9 C 0.16 7.53 2.70 30.22 0.08 7.61 16 10 H 0.03 1.41 7.17 -2.39 -0.02 1.39 16 11 C -0.53 -30.36 9.36 25.60 0.24 -30.12 16 12 H 0.04 2.73 7.58 -2.91 -0.02 2.71 16 13 C 0.03 1.73 5.47 84.66 0.46 2.20 16 14 N -0.94 -59.40 13.96 21.45 0.30 -59.11 16 15 Si 0.96 48.17 26.29 68.60 1.80 49.97 16 16 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 17 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 18 H -0.25 -11.74 6.52 99.48 0.65 -11.10 16 19 O -0.40 -18.11 7.83 -148.98 -1.17 -19.27 16 20 C -0.09 -3.13 9.37 22.26 0.21 -2.92 16 21 C -0.16 -4.71 10.03 22.31 0.22 -4.48 16 22 C 0.08 2.05 7.24 22.38 0.16 2.21 16 23 F -0.14 -3.82 16.48 44.97 0.74 -3.08 16 24 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.07 7.64 -2.39 -0.02 1.05 16 26 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 27 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 28 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 29 H 0.06 1.98 8.05 -2.39 -0.02 1.96 16 30 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.06 2.29 7.40 -2.38 -0.02 2.28 16 32 H 0.27 15.85 8.31 -92.72 -0.77 15.08 16 33 H 0.11 4.56 7.51 -2.91 -0.02 4.54 16 34 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -68.57 286.78 5.31 -63.27 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 1.03 Total: 6.81 kcal Atomic # 6 Polarization: -41.19 SS G_CDS: 2.60 Total: -38.59 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.30 Total: -59.11 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -1.17 Total: -19.27 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.74 Total: -3.08 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 1.80 Total: 49.97 kcal Total: -68.57 5.31 -63.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390463764.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.552 kcal (2) G-P(sol) polarization free energy of solvation -68.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds