Wall clock time and date at job start Mon Mar 30 2020 06:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99959 * 2 1 4 4 H 1.48496 * 109.46918 * 270.00691 * 3 2 1 5 5 H 1.48498 * 109.46839 * 30.00415 * 3 2 1 6 6 H 1.48496 * 109.46859 * 150.00415 * 3 2 1 7 7 C 1.37871 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00278 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99691 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.47588 * 60.02786 * 9 7 2 11 11 C 1.53089 * 109.48027 * 180.02562 * 9 7 2 12 12 C 1.53183 * 109.16338 * 62.37452 * 11 9 7 13 13 C 1.53180 * 109.03418 * 56.98033 * 12 11 9 14 14 C 1.53090 * 109.16215 * 303.02068 * 13 12 11 15 15 H 1.08998 * 109.49097 * 297.61741 * 14 13 12 16 16 C 1.50706 * 109.47799 * 177.58828 * 14 13 12 17 17 C 1.38244 * 119.97491 * 279.78229 * 16 14 13 18 18 C 1.38201 * 120.02142 * 179.72306 * 17 16 14 19 19 C 1.38459 * 119.97601 * 0.57371 * 18 17 16 20 20 F 1.35094 * 120.02797 * 179.67746 * 19 18 17 21 21 C 1.38461 * 119.94519 * 359.70287 * 19 18 17 22 22 C 1.38193 * 119.98059 * 359.97438 * 21 19 18 23 23 O 1.42896 * 109.48103 * 300.00199 * 9 7 2 24 24 H 0.97000 * 120.00035 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.52426 * 182.28244 * 11 9 7 26 26 H 1.09006 * 109.52279 * 302.47399 * 11 9 7 27 27 H 1.09003 * 109.54123 * 176.84633 * 12 11 9 28 28 H 1.08996 * 109.54134 * 297.02616 * 12 11 9 29 29 H 1.08994 * 109.52482 * 183.11025 * 13 12 11 30 30 H 1.09001 * 109.51779 * 62.92751 * 13 12 11 31 31 H 1.08000 * 119.98716 * 359.97438 * 17 16 14 32 32 H 1.07996 * 120.01399 * 180.25476 * 18 17 16 33 33 H 1.08009 * 120.01016 * 180.02562 * 21 19 18 34 34 H 1.07999 * 119.99486 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8753 -0.6808 0.8891 11 6 4.0221 -2.6373 -0.0023 12 6 3.5568 -3.3342 -1.2846 13 6 4.0571 -2.5396 -2.4948 14 6 3.5452 -1.1001 -2.3973 15 1 2.4557 -1.0987 -2.4284 16 6 4.0820 -0.2964 -3.5536 17 6 5.3715 0.2001 -3.5101 18 6 5.8667 0.9324 -4.5724 19 6 5.0669 1.1787 -5.6754 20 9 5.5478 1.8999 -6.7116 21 6 3.7737 0.6857 -5.7154 22 6 3.2828 -0.0519 -4.6549 23 8 3.9877 -0.5201 -1.1678 24 1 -0.4850 0.8400 0.0004 25 1 5.1113 -2.6384 0.0382 26 1 3.6239 -3.1652 0.8643 27 1 3.9636 -4.3449 -1.3184 28 1 2.4679 -3.3787 -1.3007 29 1 3.6841 -2.9976 -3.4108 30 1 5.1470 -2.5388 -2.5046 31 1 5.9934 0.0122 -2.6473 32 1 6.8755 1.3167 -4.5400 33 1 3.1490 0.8769 -6.5755 34 1 2.2739 -0.4362 -4.6856 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390584108.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:22 Heat of formation + Delta-G solvation = -78.068483 kcal Electronic energy + Delta-G solvation = -18575.667696 eV Core-core repulsion = 15580.393416 eV Total energy + Delta-G solvation = -2995.274280 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.75063 -39.40988 -37.83745 -32.82600 -32.70708 -31.67936 -30.91812 -28.76154 -25.87853 -23.74387 -22.82149 -22.21577 -20.91906 -18.90766 -17.51811 -16.93335 -16.06745 -15.86047 -15.44735 -14.85579 -14.48792 -14.16271 -13.90614 -13.64420 -13.32002 -13.03531 -12.80506 -12.59867 -12.28489 -11.95467 -11.74628 -11.34398 -10.87270 -10.76372 -10.54888 -10.35263 -10.07068 -9.92091 -9.71360 -8.94394 -8.89571 -8.67825 -8.42391 -8.03711 -6.15986 -4.25457 1.34942 1.45364 3.41879 3.46302 3.57151 3.79811 4.43063 4.46536 4.65627 4.96843 5.03218 5.19387 5.37429 5.51457 5.59498 5.64079 5.69760 5.84776 6.00538 6.10135 6.18695 6.26032 6.30769 6.34791 6.42202 6.53144 6.63738 6.74775 6.80087 6.90078 7.01976 7.11348 7.28853 7.58876 8.14774 8.59083 8.85949 9.47666 10.93956 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.022406 B = 0.008287 C = 0.007023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.357537 B = 3378.145771 C = 3985.982596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.084 3.916 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.304 1.304 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.077 0.923 9 C 0.172 3.828 10 H 0.066 0.934 11 C -0.131 4.131 12 C -0.111 4.111 13 C -0.132 4.132 14 C 0.136 3.864 15 H 0.085 0.915 16 C -0.073 4.073 17 C -0.069 4.069 18 C -0.159 4.159 19 C 0.083 3.917 20 F -0.147 7.147 21 C -0.156 4.156 22 C -0.083 4.083 23 O -0.393 6.393 24 H 0.265 0.735 25 H 0.043 0.957 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.103 -1.511 -8.364 12.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.121 4.121 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.232 1.232 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.095 0.905 9 C 0.117 3.883 10 H 0.084 0.916 11 C -0.169 4.169 12 C -0.148 4.148 13 C -0.170 4.170 14 C 0.078 3.922 15 H 0.103 0.897 16 C -0.074 4.074 17 C -0.087 4.087 18 C -0.178 4.178 19 C 0.064 3.936 20 F -0.126 7.126 21 C -0.175 4.175 22 C -0.101 4.101 23 O -0.314 6.314 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.089 -1.230 -8.389 12.430 hybrid contribution 0.218 0.864 -0.182 0.910 sum 9.307 -0.365 -8.571 12.658 Atomic orbital electron populations 1.69951 1.06547 1.27393 1.48952 1.25009 0.94617 0.99696 0.92772 0.86456 0.79578 0.82286 0.78916 1.20065 1.23227 1.19024 1.21443 0.89534 0.94716 1.52849 0.90501 1.20306 0.94728 0.88808 0.84508 0.91612 1.21973 0.98543 0.98843 0.97534 1.21472 1.02083 0.96797 0.94489 1.22045 1.00353 0.96157 0.98439 1.20533 0.99321 0.89518 0.82820 0.89738 1.20110 0.93925 0.97959 0.95361 1.20955 0.95506 0.95118 0.97113 1.21121 1.00499 1.02537 0.93673 1.17701 0.93619 0.96401 0.85895 1.91454 1.88499 1.75812 1.56856 1.21040 0.94469 1.01285 1.00720 1.20941 0.99915 0.96890 0.92371 1.87783 1.74167 1.55878 1.13574 0.92558 0.93775 0.91954 0.93577 0.90685 0.92209 0.92401 0.84566 0.85165 0.85021 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.96 55.43 0.77 -25.53 16 2 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 3 Si 0.90 22.67 26.18 -169.99 -4.45 18.22 16 4 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.27 -6.54 6.54 56.52 0.37 -6.18 16 7 C -0.55 -14.48 7.17 -34.44 -0.25 -14.72 16 8 H 0.08 2.18 7.11 -52.49 -0.37 1.81 16 9 C 0.17 3.91 2.64 -27.83 -0.07 3.84 16 10 H 0.07 1.54 7.20 -51.93 -0.37 1.17 16 11 C -0.13 -2.50 5.59 -26.59 -0.15 -2.65 16 12 C -0.11 -1.96 5.78 -26.54 -0.15 -2.11 16 13 C -0.13 -2.23 5.40 -26.59 -0.14 -2.37 16 14 C 0.14 2.67 2.58 -27.83 -0.07 2.60 16 15 H 0.08 1.89 6.95 -51.93 -0.36 1.53 16 16 C -0.07 -1.29 4.98 -104.61 -0.52 -1.81 16 17 C -0.07 -1.11 9.35 -39.59 -0.37 -1.48 16 18 C -0.16 -2.33 10.03 -39.51 -0.40 -2.73 16 19 C 0.08 1.24 7.30 -39.42 -0.29 0.95 16 20 F -0.15 -2.17 17.27 2.25 0.04 -2.13 16 21 C -0.16 -2.27 10.03 -39.52 -0.40 -2.67 16 22 C -0.08 -1.32 9.67 -39.59 -0.38 -1.70 16 23 O -0.39 -8.71 7.26 -35.23 -0.26 -8.97 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.47 6.85 -51.93 -0.36 1.11 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.14 2.12 7.77 -52.49 -0.41 1.72 16 32 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 33 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 34 H 0.13 1.96 8.04 -52.49 -0.42 1.53 16 LS Contribution 280.44 15.07 4.23 4.23 Total: -1.00 -28.92 280.44 -7.38 -36.30 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -4.42 Total: 0.50 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -3.29 Total: -22.62 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.77 Total: -25.53 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.26 Total: -8.97 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.45 Total: 18.22 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.92 -7.38 -36.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390584108.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.769 kcal (2) G-P(sol) polarization free energy of solvation -28.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds