Wall clock time and date at job start Mon Mar 30 2020 06:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00049 * 2 1 4 4 H 1.48498 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47012 * 300.00198 * 3 2 1 6 6 H 1.48503 * 109.46762 * 59.99681 * 3 2 1 7 7 C 1.37877 * 120.00519 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00302 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99666 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.48019 * 60.02112 * 9 7 2 11 11 C 1.53087 * 109.49107 * 180.02562 * 9 7 2 12 12 C 1.53180 * 109.16584 * 177.59460 * 11 9 7 13 13 C 1.53176 * 109.04760 * 303.03079 * 12 11 9 14 14 C 1.53088 * 109.16715 * 56.95666 * 13 12 11 15 15 H 1.09005 * 109.47964 * 62.39449 * 14 13 12 16 16 C 1.50696 * 109.48460 * 182.42445 * 14 13 12 17 17 C 1.38248 * 119.97128 * 264.97705 * 16 14 13 18 18 C 1.38196 * 120.02483 * 179.97438 * 17 16 14 19 19 C 1.38458 * 119.97492 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.02786 * 179.97438 * 19 18 17 21 21 C 1.38465 * 119.94675 * 0.24873 * 19 18 17 22 22 C 1.38196 * 119.97501 * 359.51590 * 21 19 18 23 23 O 1.42905 * 109.42529 * 302.41479 * 14 13 12 24 24 H 0.96997 * 119.99929 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.52464 * 297.50061 * 11 9 7 26 26 H 1.08999 * 109.52459 * 57.62989 * 11 9 7 27 27 H 1.09006 * 109.54298 * 62.88701 * 12 11 9 28 28 H 1.09000 * 109.54778 * 183.06091 * 12 11 9 29 29 H 1.09001 * 109.51143 * 297.05819 * 13 12 11 30 30 H 1.08992 * 109.53359 * 176.87286 * 13 12 11 31 31 H 1.08002 * 119.98915 * 359.97438 * 17 16 14 32 32 H 1.07996 * 120.01603 * 179.97438 * 18 17 16 33 33 H 1.08007 * 120.01064 * 179.75151 * 21 19 18 34 34 H 1.07993 * 119.98761 * 180.20627 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6251 -2.5574 -0.8898 11 6 2.2456 -3.6630 0.0018 12 6 1.4732 -4.9844 0.0625 13 6 0.5778 -4.9834 1.3054 14 6 -0.3521 -3.7683 1.2539 15 1 -0.9996 -3.8429 0.3802 16 6 -1.1951 -3.7273 2.5023 17 6 -2.4615 -4.2818 2.4990 18 6 -3.2354 -4.2454 3.6434 19 6 -2.7422 -3.6527 4.7934 20 9 -3.4980 -3.6159 5.9126 21 6 -1.4758 -3.0926 4.7938 22 6 -0.7019 -3.1346 3.6497 23 8 0.4295 -2.5751 1.1673 24 1 -0.4850 0.8400 -0.0004 25 1 2.8436 -3.6322 -0.9090 26 1 2.8997 -3.5823 0.8700 27 1 0.8568 -5.0878 -0.8306 28 1 2.1761 -5.8155 0.1186 29 1 1.1975 -4.9301 2.2005 30 1 -0.0169 -5.8965 1.3268 31 1 -2.8462 -4.7437 1.6017 32 1 -4.2248 -4.6782 3.6405 33 1 -1.0916 -2.6265 5.6892 34 1 0.2871 -2.7008 3.6508 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390584118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:24 Heat of formation + Delta-G solvation = -81.823224 kcal Electronic energy + Delta-G solvation = -18200.369021 eV Core-core repulsion = 15204.931923 eV Total energy + Delta-G solvation = -2995.437097 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.66815 -39.23038 -37.55337 -33.07559 -32.51328 -31.38471 -30.80838 -28.65530 -25.62630 -23.70395 -22.75005 -21.99264 -20.72228 -19.25004 -17.42375 -16.68581 -16.08535 -15.51300 -15.36046 -14.63723 -14.48968 -14.30841 -13.84720 -13.75621 -13.22779 -12.87824 -12.79328 -12.62410 -12.01940 -11.83864 -11.39717 -10.99699 -10.87201 -10.77886 -10.65486 -10.36615 -10.29982 -9.90031 -9.69499 -8.91740 -8.79826 -8.57272 -8.28428 -7.85234 -6.03936 -4.16470 1.44328 1.55487 3.28248 3.36770 3.39944 3.89843 4.39557 4.51564 4.76592 5.06823 5.11402 5.24537 5.46675 5.50684 5.58322 5.66777 5.71421 5.90315 6.05066 6.07752 6.21041 6.26609 6.34410 6.39755 6.50051 6.55779 6.67515 6.78874 6.82125 6.86677 7.02277 7.20580 7.48339 7.87137 8.24793 8.74184 9.07698 9.54233 11.03343 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.021368 B = 0.006873 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.059341 B = 4072.873078 C = 4989.546336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.078 3.922 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.065 0.935 9 C 0.219 3.781 10 H 0.014 0.986 11 C -0.144 4.144 12 C -0.120 4.120 13 C -0.139 4.139 14 C 0.121 3.879 15 H 0.052 0.948 16 C -0.066 4.066 17 C -0.089 4.089 18 C -0.159 4.159 19 C 0.082 3.918 20 F -0.149 7.149 21 C -0.158 4.158 22 C -0.058 4.058 23 O -0.348 6.348 24 H 0.260 0.740 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.187 -9.170 4.882 10.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.128 4.128 3 Si 0.718 3.282 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.083 0.917 9 C 0.164 3.836 10 H 0.032 0.968 11 C -0.182 4.182 12 C -0.158 4.158 13 C -0.177 4.177 14 C 0.062 3.938 15 H 0.070 0.930 16 C -0.067 4.067 17 C -0.107 4.107 18 C -0.178 4.178 19 C 0.063 3.937 20 F -0.127 7.127 21 C -0.176 4.176 22 C -0.076 4.076 23 O -0.268 6.268 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.376 -8.912 5.056 10.789 hybrid contribution 0.199 0.739 0.058 0.768 sum -3.177 -8.173 5.114 10.151 Atomic orbital electron populations 1.70042 1.06000 1.26454 1.46856 1.25071 0.94764 0.99258 0.93692 0.86583 0.80274 0.83725 0.77665 1.19602 1.20909 1.20848 1.21028 0.92707 0.89604 1.53034 0.91722 1.19726 0.86999 0.92156 0.84713 0.96813 1.22264 0.99623 0.95182 1.01162 1.21621 0.98350 0.98466 0.97360 1.22151 0.98562 0.97935 0.99030 1.20619 0.91875 0.88393 0.92911 0.93043 1.19960 0.94175 0.96992 0.95551 1.20813 0.93263 0.99150 0.97514 1.20962 1.01090 1.03306 0.92403 1.17702 0.90567 1.02423 0.83043 1.91451 1.75744 1.94967 1.50578 1.21157 0.93505 1.02676 1.00311 1.20999 1.00487 0.95425 0.90672 1.88375 1.57555 1.34624 1.46221 0.92996 0.92419 0.92458 0.92614 0.92990 0.91674 0.92484 0.85349 0.85266 0.85174 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.91 12.84 55.43 0.71 -24.20 16 2 C 0.08 2.18 5.40 -17.82 -0.10 2.08 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.04 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.53 -14.43 8.79 -34.44 -0.30 -14.73 16 8 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 9 C 0.22 5.47 2.50 -27.84 -0.07 5.40 16 10 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 11 C -0.14 -2.94 5.36 -26.59 -0.14 -3.08 16 12 C -0.12 -2.03 6.03 -26.55 -0.16 -2.19 16 13 C -0.14 -2.32 5.40 -26.60 -0.14 -2.46 16 14 C 0.12 2.37 2.85 -27.84 -0.08 2.29 16 15 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 16 C -0.07 -1.19 5.01 -104.62 -0.52 -1.71 16 17 C -0.09 -1.36 9.68 -39.59 -0.38 -1.74 16 18 C -0.16 -2.28 10.03 -39.52 -0.40 -2.68 16 19 C 0.08 1.26 7.30 -39.42 -0.29 0.97 16 20 F -0.15 -2.25 17.27 2.25 0.04 -2.21 16 21 C -0.16 -2.48 10.03 -39.51 -0.40 -2.88 16 22 C -0.06 -1.02 9.35 -39.59 -0.37 -1.39 16 23 O -0.35 -8.55 8.58 -35.23 -0.30 -8.85 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.13 1.78 8.06 -52.48 -0.42 1.35 16 34 H 0.14 2.61 7.62 -52.49 -0.40 2.21 16 LS Contribution 290.16 15.07 4.37 4.37 Total: -1.00 -29.25 290.16 -8.14 -37.39 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.59 Total: -0.42 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -3.35 Total: -22.12 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.71 Total: -24.20 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.30 Total: -8.85 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.25 -8.14 -37.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390584118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.432 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds