Wall clock time and date at job start Mon Mar 30 2020 06:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99969 * 2 1 4 4 H 1.48506 * 109.47216 * 270.00481 * 3 2 1 5 5 H 1.48503 * 109.47187 * 29.99882 * 3 2 1 6 6 H 1.48491 * 109.47237 * 150.00048 * 3 2 1 7 7 C 1.37874 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00001 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00074 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.48376 * 300.02556 * 9 7 2 11 11 C 1.53097 * 109.48297 * 179.97438 * 9 7 2 12 12 C 1.53181 * 109.16171 * 297.62816 * 11 9 7 13 13 C 1.53174 * 109.03663 * 303.01539 * 12 11 9 14 14 C 1.53093 * 109.16441 * 56.98448 * 13 12 11 15 15 H 1.09000 * 109.47949 * 62.37809 * 14 13 12 16 16 C 1.50696 * 109.48362 * 182.40852 * 14 13 12 17 17 C 1.38248 * 119.97128 * 264.99715 * 16 14 13 18 18 C 1.38196 * 120.02483 * 179.97438 * 17 16 14 19 19 C 1.38458 * 119.97492 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.02786 * 179.97438 * 19 18 17 21 21 C 1.38465 * 119.94675 * 0.24873 * 19 18 17 22 22 C 1.38196 * 119.97501 * 359.51590 * 21 19 18 23 23 O 1.42907 * 109.41224 * 302.39049 * 14 13 12 24 24 H 0.97004 * 120.00451 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.52205 * 177.72140 * 11 9 7 26 26 H 1.09001 * 109.51683 * 57.52942 * 11 9 7 27 27 H 1.08997 * 109.54006 * 183.14603 * 12 11 9 28 28 H 1.09002 * 109.61555 * 62.93195 * 12 11 9 29 29 H 1.08997 * 109.52623 * 297.07856 * 13 12 11 30 30 H 1.09000 * 109.57478 * 176.91557 * 13 12 11 31 31 H 1.08001 * 119.98881 * 0.02562 * 17 16 14 32 32 H 1.07996 * 120.01603 * 179.97438 * 18 17 16 33 33 H 1.08007 * 120.01064 * 179.75151 * 21 19 18 34 34 H 1.07993 * 119.98776 * 180.24915 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8747 -0.6796 -0.8908 11 6 4.0221 -2.6373 -0.0010 12 6 3.5577 -3.3348 1.2813 13 6 4.0589 -2.5409 2.4915 14 6 3.5469 -1.1013 2.3952 15 1 2.4574 -1.1001 2.4271 16 6 4.0845 -0.2982 3.5515 17 6 3.3252 -0.1420 4.6962 18 6 3.8173 0.5938 5.7574 19 6 5.0712 1.1751 5.6737 20 9 5.5531 1.8951 6.7104 21 6 5.8284 1.0227 4.5246 22 6 5.3362 0.2824 3.4665 23 8 3.9885 -0.5214 1.1660 24 1 -0.4851 0.8400 0.0004 25 1 5.1113 -2.6383 -0.0423 26 1 3.6232 -3.1648 -0.8675 27 1 3.9645 -4.3455 1.3143 28 1 2.4688 -3.3794 1.2999 29 1 5.1488 -2.5399 2.5006 30 1 3.6873 -2.9990 3.4081 31 1 2.3473 -0.5959 4.7614 32 1 3.2238 0.7160 6.6514 33 1 6.8050 1.4791 4.4566 34 1 5.9283 0.1600 2.5717 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390584121.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:28 Heat of formation + Delta-G solvation = -75.222533 kcal Electronic energy + Delta-G solvation = -18580.987932 eV Core-core repulsion = 15585.837062 eV Total energy + Delta-G solvation = -2995.150870 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.74046 -39.39679 -37.82062 -32.80515 -32.68860 -31.66183 -30.90130 -28.74477 -25.85633 -23.72965 -22.81188 -22.18455 -20.90118 -18.89716 -17.51190 -16.90635 -16.06023 -15.84054 -15.43901 -14.85370 -14.46543 -14.17371 -13.88168 -13.64352 -13.31201 -13.00481 -12.79442 -12.58693 -12.26301 -11.97700 -11.80007 -11.28098 -10.85242 -10.80173 -10.44594 -10.32314 -10.02319 -9.90384 -9.74344 -8.88823 -8.84571 -8.65347 -8.39881 -7.88308 -6.14462 -4.23265 1.36149 1.46222 3.36541 3.46922 3.70274 3.81407 4.43941 4.50674 4.68667 4.98410 5.03927 5.22672 5.37484 5.53137 5.60851 5.65345 5.71365 5.86091 6.02090 6.11276 6.20007 6.27172 6.31888 6.35658 6.43202 6.54569 6.66105 6.75898 6.81645 6.90593 7.03166 7.12381 7.29140 7.60907 8.17743 8.61751 8.88254 9.50324 10.95764 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.022408 B = 0.008273 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.250420 B = 3383.648714 C = 3981.119959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.085 3.915 3 Si 0.858 3.142 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.216 1.216 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.175 3.825 10 H 0.061 0.939 11 C -0.131 4.131 12 C -0.110 4.110 13 C -0.132 4.132 14 C 0.134 3.866 15 H 0.085 0.915 16 C -0.072 4.072 17 C -0.085 4.085 18 C -0.156 4.156 19 C 0.082 3.918 20 F -0.148 7.148 21 C -0.159 4.159 22 C -0.068 4.068 23 O -0.387 6.387 24 H 0.264 0.736 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.350 -1.398 8.414 12.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.119 4.119 3 Si 0.685 3.315 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.138 1.138 7 C -0.588 4.588 8 H 0.093 0.907 9 C 0.119 3.881 10 H 0.079 0.921 11 C -0.169 4.169 12 C -0.148 4.148 13 C -0.170 4.170 14 C 0.076 3.924 15 H 0.102 0.898 16 C -0.072 4.072 17 C -0.104 4.104 18 C -0.175 4.175 19 C 0.063 3.937 20 F -0.127 7.127 21 C -0.178 4.178 22 C -0.086 4.086 23 O -0.308 6.308 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.344 -1.114 8.448 12.646 hybrid contribution 0.093 0.858 0.096 0.869 sum 9.437 -0.256 8.544 12.733 Atomic orbital electron populations 1.69947 1.06681 1.27372 1.48867 1.24982 0.94545 0.99680 0.92721 0.87193 0.83374 0.82484 0.78490 1.21263 1.22131 1.13838 1.21411 0.89530 0.94652 1.53170 0.90662 1.20154 0.94689 0.88691 0.84561 0.92134 1.21969 0.98500 0.98917 0.97506 1.21462 1.02057 0.96769 0.94503 1.22051 1.00312 0.96297 0.98368 1.20511 0.99283 0.89414 0.83216 0.89762 1.20118 0.94133 0.97794 0.95149 1.20915 0.99822 0.97462 0.92153 1.21029 0.94968 1.00828 1.00676 1.17706 0.94211 0.96323 0.85502 1.91457 1.88278 1.75976 1.56954 1.21131 1.00899 1.02650 0.93128 1.20962 0.95474 0.94695 0.97483 1.88035 1.74500 1.54920 1.13301 0.92624 0.93808 0.92031 0.93641 0.90713 0.92484 0.92320 0.84839 0.85068 0.85213 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 2 C 0.09 2.36 5.47 -17.82 -0.10 2.27 16 3 Si 0.86 21.28 26.99 -169.99 -4.59 16.69 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.22 -5.18 5.31 56.52 0.30 -4.88 16 7 C -0.55 -14.48 7.17 -34.44 -0.25 -14.73 16 8 H 0.08 2.14 7.12 -52.49 -0.37 1.77 16 9 C 0.17 3.92 2.65 -27.83 -0.07 3.85 16 10 H 0.06 1.38 7.57 -51.93 -0.39 0.99 16 11 C -0.13 -2.49 5.59 -26.59 -0.15 -2.63 16 12 C -0.11 -1.95 5.77 -26.55 -0.15 -2.10 16 13 C -0.13 -2.23 5.40 -26.59 -0.14 -2.37 16 14 C 0.13 2.60 2.58 -27.84 -0.07 2.52 16 15 H 0.08 1.87 7.00 -51.93 -0.36 1.50 16 16 C -0.07 -1.24 5.01 -104.62 -0.52 -1.76 16 17 C -0.09 -1.32 9.68 -39.59 -0.38 -1.71 16 18 C -0.16 -2.23 10.03 -39.52 -0.40 -2.62 16 19 C 0.08 1.21 7.30 -39.42 -0.29 0.92 16 20 F -0.15 -2.16 17.27 2.25 0.04 -2.12 16 21 C -0.16 -2.32 10.03 -39.51 -0.40 -2.71 16 22 C -0.07 -1.10 9.35 -39.59 -0.37 -1.47 16 23 O -0.39 -8.42 6.19 -35.23 -0.22 -8.63 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.46 6.86 -51.93 -0.36 1.11 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.14 2.16 7.62 -52.49 -0.40 1.76 16 LS Contribution 279.31 15.07 4.21 4.21 Total: -1.00 -28.84 279.31 -7.58 -36.43 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -4.50 Total: 1.63 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -3.29 Total: -22.56 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.77 Total: -25.64 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.22 Total: -8.63 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.59 Total: 16.69 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.84 -7.58 -36.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390584121.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.796 kcal (2) G-P(sol) polarization free energy of solvation -28.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds