Wall clock time and date at job start Mon Mar 30 2020 06:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99969 * 2 1 4 4 H 1.48506 * 109.47216 * 270.00481 * 3 2 1 5 5 H 1.48503 * 109.47187 * 29.99882 * 3 2 1 6 6 H 1.48491 * 109.47237 * 150.00048 * 3 2 1 7 7 C 1.37874 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00001 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00074 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.48376 * 300.02556 * 9 7 2 11 11 C 1.53097 * 109.48297 * 179.97438 * 9 7 2 12 12 C 1.53181 * 109.16171 * 297.62816 * 11 9 7 13 13 C 1.53174 * 109.03663 * 303.01539 * 12 11 9 14 14 C 1.53093 * 109.16441 * 56.98448 * 13 12 11 15 15 H 1.09000 * 109.47949 * 62.37809 * 14 13 12 16 16 C 1.50696 * 109.48362 * 182.40852 * 14 13 12 17 17 C 1.38248 * 119.97128 * 264.99715 * 16 14 13 18 18 C 1.38196 * 120.02483 * 179.97438 * 17 16 14 19 19 C 1.38458 * 119.97492 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.02786 * 179.97438 * 19 18 17 21 21 C 1.38465 * 119.94675 * 0.24873 * 19 18 17 22 22 C 1.38196 * 119.97501 * 359.51590 * 21 19 18 23 23 O 1.42907 * 109.41224 * 302.39049 * 14 13 12 24 24 H 0.97004 * 120.00451 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.52205 * 177.72140 * 11 9 7 26 26 H 1.09001 * 109.51683 * 57.52942 * 11 9 7 27 27 H 1.08997 * 109.54006 * 183.14603 * 12 11 9 28 28 H 1.09002 * 109.61555 * 62.93195 * 12 11 9 29 29 H 1.08997 * 109.52623 * 297.07856 * 13 12 11 30 30 H 1.09000 * 109.57478 * 176.91557 * 13 12 11 31 31 H 1.08001 * 119.98881 * 0.02562 * 17 16 14 32 32 H 1.07996 * 120.01603 * 179.97438 * 18 17 16 33 33 H 1.08007 * 120.01064 * 179.75151 * 21 19 18 34 34 H 1.07993 * 119.98776 * 180.24915 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8747 -0.6796 -0.8908 11 6 4.0221 -2.6373 -0.0010 12 6 3.5577 -3.3348 1.2813 13 6 4.0589 -2.5409 2.4915 14 6 3.5469 -1.1013 2.3952 15 1 2.4574 -1.1001 2.4271 16 6 4.0845 -0.2982 3.5515 17 6 3.3252 -0.1420 4.6962 18 6 3.8173 0.5938 5.7574 19 6 5.0712 1.1751 5.6737 20 9 5.5531 1.8951 6.7104 21 6 5.8284 1.0227 4.5246 22 6 5.3362 0.2824 3.4665 23 8 3.9885 -0.5214 1.1660 24 1 -0.4851 0.8400 0.0004 25 1 5.1113 -2.6383 -0.0423 26 1 3.6232 -3.1648 -0.8675 27 1 3.9645 -4.3455 1.3143 28 1 2.4688 -3.3794 1.2999 29 1 5.1488 -2.5399 2.5006 30 1 3.6873 -2.9990 3.4081 31 1 2.3473 -0.5959 4.7614 32 1 3.2238 0.7160 6.6514 33 1 6.8050 1.4791 4.4566 34 1 5.9283 0.1600 2.5717 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390584121.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:27 Heat of formation + Delta-G solvation = -90.464097 kcal Electronic energy + Delta-G solvation = -18581.648856 eV Core-core repulsion = 15585.837062 eV Total energy + Delta-G solvation = -2995.811794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.87865 -40.80417 -39.24012 -34.72560 -34.24528 -33.27550 -32.06357 -30.22466 -27.67973 -25.19090 -24.02932 -23.76619 -22.22610 -20.60453 -18.82820 -18.60702 -17.43731 -17.26663 -16.64180 -16.55659 -15.91251 -15.75749 -15.46589 -15.11767 -14.55447 -14.43387 -14.27055 -14.08656 -13.89909 -13.48903 -13.12322 -12.94700 -12.59806 -12.29204 -11.98797 -11.88726 -11.70499 -11.55721 -11.36877 -10.78456 -10.63158 -10.03788 -9.89175 -9.36732 -8.30881 -6.40503 0.15406 0.30631 1.36673 1.43518 1.70963 2.43589 2.60375 2.99916 3.28458 3.33280 3.83697 3.92443 3.99163 4.18778 4.24524 4.38504 4.41224 4.47231 4.55727 4.72236 4.91796 4.93881 4.99807 5.09409 5.15519 5.18851 5.26611 5.31372 5.31910 5.44463 5.51251 5.68407 5.74067 5.94799 6.13981 6.69202 6.84738 7.35865 8.82976 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.022408 B = 0.008273 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.250420 B = 3383.648714 C = 3981.119959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.034 3.966 3 Si 0.914 3.086 4 H -0.283 1.283 5 H -0.304 1.304 6 H -0.201 1.201 7 C -0.538 4.538 8 H 0.042 0.958 9 C 0.172 3.828 10 H 0.060 0.940 11 C -0.128 4.128 12 C -0.110 4.110 13 C -0.126 4.126 14 C 0.133 3.867 15 H 0.046 0.954 16 C -0.092 4.092 17 C -0.093 4.093 18 C -0.151 4.151 19 C 0.077 3.923 20 F -0.146 7.146 21 C -0.153 4.153 22 C -0.075 4.075 23 O -0.392 6.392 24 H 0.263 0.737 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.813 -1.217 9.580 15.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.166 4.166 3 Si 0.739 3.261 4 H -0.209 1.209 5 H -0.231 1.231 6 H -0.123 1.123 7 C -0.575 4.575 8 H 0.060 0.940 9 C 0.116 3.884 10 H 0.078 0.922 11 C -0.166 4.166 12 C -0.147 4.147 13 C -0.163 4.163 14 C 0.075 3.925 15 H 0.064 0.936 16 C -0.092 4.092 17 C -0.111 4.111 18 C -0.169 4.169 19 C 0.058 3.942 20 F -0.124 7.124 21 C -0.172 4.172 22 C -0.093 4.093 23 O -0.312 6.312 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.157 0.843 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.828 -0.947 9.617 15.274 hybrid contribution -0.685 0.744 -0.206 1.032 sum 11.143 -0.203 9.411 14.587 Atomic orbital electron populations 1.70071 1.08280 1.27917 1.51683 1.25698 0.95029 1.02844 0.92994 0.86337 0.82605 0.78691 0.78471 1.20943 1.23112 1.12250 1.21656 0.91879 0.92985 1.51007 0.94010 1.20096 0.91926 0.91280 0.85061 0.92198 1.21921 1.00007 0.96442 0.98207 1.21447 1.00295 0.98603 0.94361 1.22005 1.01252 0.94382 0.98683 1.20518 0.97279 0.91629 0.83026 0.93595 1.20040 0.95242 0.98993 0.94937 1.21025 1.00054 0.97893 0.92162 1.21255 0.95027 0.99656 1.01000 1.17855 0.94426 0.96215 0.85674 1.91468 1.88242 1.75884 1.56836 1.21342 1.01784 1.01735 0.92323 1.20997 0.95076 0.95074 0.98171 1.87960 1.74028 1.55476 1.13781 0.92811 0.91122 0.92193 0.90499 0.93753 0.90679 0.90624 0.84328 0.82681 0.82746 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.67 13.96 21.45 0.30 -57.37 16 2 C 0.03 1.91 5.47 84.65 0.46 2.37 16 3 Si 0.91 44.45 26.99 68.60 1.85 46.31 16 4 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 5 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 6 H -0.20 -9.19 5.31 99.48 0.53 -8.66 16 7 C -0.54 -28.96 7.17 25.60 0.18 -28.78 16 8 H 0.04 2.48 7.12 -2.91 -0.02 2.46 16 9 C 0.17 7.62 2.65 29.88 0.08 7.70 16 10 H 0.06 2.66 7.57 -2.39 -0.02 2.64 16 11 C -0.13 -4.64 5.59 30.69 0.17 -4.47 16 12 C -0.11 -3.70 5.77 30.71 0.18 -3.53 16 13 C -0.13 -3.97 5.40 30.68 0.17 -3.81 16 14 C 0.13 5.06 2.58 29.88 0.08 5.14 16 15 H 0.05 2.09 7.00 -2.39 -0.02 2.07 16 16 C -0.09 -3.03 5.01 -19.86 -0.10 -3.13 16 17 C -0.09 -2.75 9.68 22.26 0.22 -2.53 16 18 C -0.15 -3.91 10.03 22.31 0.22 -3.69 16 19 C 0.08 2.06 7.30 22.38 0.16 2.22 16 20 F -0.15 -3.81 17.27 44.97 0.78 -3.03 16 21 C -0.15 -3.97 10.03 22.31 0.22 -3.75 16 22 C -0.08 -2.23 9.35 22.26 0.21 -2.02 16 23 O -0.39 -16.52 6.19 -148.98 -0.92 -17.44 16 24 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 25 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.04 1.75 6.86 -2.39 -0.02 1.74 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 32 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 34 H 0.14 4.02 7.62 -2.91 -0.02 3.99 16 Total: -1.00 -62.55 279.31 5.17 -57.39 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.91 Total: 12.41 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 2.25 Total: -38.27 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.30 Total: -57.37 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.92 Total: -17.44 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.78 Total: -3.03 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.85 Total: 46.31 kcal Total: -62.55 5.17 -57.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390584121.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.077 kcal (2) G-P(sol) polarization free energy of solvation -62.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds