Wall clock time and date at job start Mon Mar 30 2020 06:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38223 * 119.98473 * 2 1 4 4 C 1.38446 * 119.97165 * 180.02562 * 3 2 1 5 5 F 1.35103 * 120.02080 * 179.97438 * 4 3 2 6 6 C 1.38479 * 119.94673 * 359.97438 * 4 3 2 7 7 C 1.38170 * 119.97696 * 359.74855 * 6 4 3 8 8 C 1.38224 * 119.98905 * 180.02562 * 2 1 3 9 9 C 1.50696 * 119.97292 * 359.96264 * 8 2 1 10 10 H 1.09000 * 110.27973 * 34.35491 * 9 8 2 11 11 C 1.54953 * 110.39105 * 272.21054 * 9 8 2 12 12 C 1.55310 * 100.93963 * 204.59715 * 11 9 8 13 13 C 1.54381 * 102.25377 * 34.13484 * 12 11 9 14 14 H 1.08998 * 109.90670 * 98.19827 * 13 12 11 15 15 C 1.50701 * 109.82961 * 219.13113 * 13 12 11 16 16 H 1.08002 * 119.99761 * 359.58109 * 15 13 12 17 17 C 1.37871 * 119.99694 * 179.86672 * 15 13 12 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48504 * 109.47266 * 60.00049 * 19 17 15 21 21 H 1.48504 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47383 * 299.99456 * 19 17 15 23 23 O 1.43244 * 107.58837 * 338.64002 * 13 12 11 24 24 H 1.09003 * 109.47240 * 269.97925 * 1 2 3 25 25 H 1.09000 * 109.47077 * 29.98171 * 1 2 3 26 26 H 1.08998 * 109.47087 * 149.98236 * 1 2 3 27 27 H 1.07994 * 120.01335 * 0.04290 * 3 2 1 28 28 H 1.08002 * 120.01059 * 180.02562 * 6 4 3 29 29 H 1.08003 * 119.98949 * 180.25635 * 7 6 4 30 30 H 1.08992 * 111.12559 * 322.51458 * 11 9 8 31 31 H 1.08999 * 111.11856 * 86.67899 * 11 9 8 32 32 H 1.08998 * 110.84764 * 275.94296 * 12 11 9 33 33 H 1.08999 * 110.84595 * 152.32535 * 12 11 9 34 34 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1972 0.0000 4 6 3.5822 1.1969 -0.0005 5 9 4.2584 2.3665 -0.0011 6 6 4.2732 -0.0032 -0.0005 7 6 3.5805 -1.1987 0.0053 8 6 2.1978 -1.1972 -0.0005 9 6 1.4435 -2.5018 -0.0003 10 1 0.5233 -2.4062 -0.5767 11 6 1.1256 -2.9413 1.4512 12 6 0.9794 -4.4767 1.2689 13 6 2.0141 -4.7752 0.1627 14 1 2.9392 -5.1403 0.6085 15 6 1.4629 -5.8067 -0.7878 16 1 0.4785 -6.2198 -0.6248 17 6 2.2179 -6.2272 -1.8621 18 7 3.4167 -5.7241 -2.0606 19 14 1.5379 -7.5115 -3.0359 20 1 0.2862 -7.0043 -3.6535 21 1 2.5369 -7.7887 -4.0991 22 1 1.2497 -8.7620 -2.2886 23 8 2.2627 -3.5515 -0.5391 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6577 2.1325 0.0007 28 1 5.3532 -0.0046 -0.0005 29 1 4.1192 -2.1347 0.0094 30 1 1.9495 -2.7022 2.1234 31 1 0.1938 -2.4967 1.8010 32 1 -0.0269 -4.7341 0.9386 33 1 1.2331 -5.0025 2.1894 34 1 3.9479 -6.0203 -2.8162 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393753216.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:57 Heat of formation + Delta-G solvation = -76.934919 kcal Electronic energy + Delta-G solvation = -18162.465058 eV Core-core repulsion = 15167.239934 eV Total energy + Delta-G solvation = -2995.225125 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.69381 -39.52028 -37.56511 -32.92386 -32.52860 -30.97711 -30.83820 -27.86492 -26.76027 -24.62528 -22.44429 -21.52727 -20.28558 -20.00954 -17.06299 -16.57311 -16.42276 -15.77084 -15.41452 -14.94051 -14.53249 -14.08967 -13.70309 -13.33441 -13.20925 -13.00984 -12.70794 -12.29228 -12.16562 -11.82606 -11.73876 -11.41803 -10.89504 -10.80172 -10.63800 -10.52615 -10.36661 -10.19679 -9.84258 -9.23032 -8.65750 -8.54354 -8.23624 -7.83294 -5.99629 -4.13669 1.40430 1.50589 3.31414 3.36685 3.38348 3.82577 4.42213 4.45296 4.79597 5.01443 5.04368 5.25312 5.34242 5.39391 5.46708 5.57487 5.64655 5.75374 5.77479 5.94060 6.13963 6.17363 6.28270 6.36175 6.38665 6.45419 6.54523 6.60679 6.69804 6.80119 7.01795 7.19830 7.61557 7.87265 8.26298 8.55678 9.01582 9.58202 11.06950 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.029809 B = 0.005855 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.101443 B = 4780.706783 C = 5167.119651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.058 4.058 3 C -0.161 4.161 4 C 0.085 3.915 5 F -0.148 7.148 6 C -0.163 4.163 7 C -0.058 4.058 8 C -0.080 4.080 9 C 0.112 3.888 10 H 0.068 0.932 11 C -0.145 4.145 12 C -0.145 4.145 13 C 0.206 3.794 14 H 0.039 0.961 15 C -0.546 4.546 16 H 0.059 0.941 17 C 0.080 3.920 18 N -0.863 5.863 19 Si 0.889 3.111 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 O -0.351 6.351 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.145 0.855 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.144 10.924 5.614 12.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.059 4.059 3 C -0.180 4.180 4 C 0.066 3.934 5 F -0.127 7.127 6 C -0.181 4.181 7 C -0.076 4.076 8 C -0.080 4.080 9 C 0.054 3.946 10 H 0.085 0.915 11 C -0.183 4.183 12 C -0.182 4.182 13 C 0.151 3.849 14 H 0.057 0.943 15 C -0.584 4.584 16 H 0.077 0.923 17 C -0.126 4.126 18 N -0.499 5.499 19 Si 0.716 3.284 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 O -0.270 6.270 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.163 0.837 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.801 10.978 5.333 12.521 hybrid contribution -0.263 -0.439 -0.600 0.789 sum -3.064 10.538 4.733 11.951 Atomic orbital electron populations 1.20874 0.90842 1.03246 1.02498 1.19502 0.96203 0.91534 0.98617 1.20829 0.92107 0.98772 1.06286 1.17671 0.90150 0.81074 1.04460 1.91452 1.80459 1.46545 1.94243 1.21151 1.00660 0.91267 1.05058 1.21070 0.93894 0.97919 0.94699 1.20080 0.94168 0.94582 0.99187 1.21590 0.93249 0.86573 0.93215 0.91492 1.23217 1.00983 0.97352 0.96749 1.23219 1.01699 0.93374 0.99956 1.20306 0.93066 0.82946 0.88616 0.94304 1.21343 1.02661 1.22404 1.11978 0.92333 1.25044 0.94587 0.95594 0.97393 1.70008 1.09712 1.41302 1.28864 0.86737 0.78907 0.81962 0.80768 1.20163 1.21208 1.20167 1.88791 1.61793 1.17515 1.58946 0.90930 0.91654 0.90442 0.85326 0.85148 0.83705 0.91474 0.91617 0.91481 0.92128 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.60 36.00 0.35 -1.07 16 2 C -0.06 -0.87 5.88 -104.64 -0.62 -1.48 16 3 C -0.16 -2.28 9.68 -39.51 -0.38 -2.67 16 4 C 0.09 1.30 7.30 -39.42 -0.29 1.01 16 5 F -0.15 -2.21 17.27 2.25 0.04 -2.17 16 6 C -0.16 -2.54 10.03 -39.52 -0.40 -2.94 16 7 C -0.06 -1.02 9.37 -39.60 -0.37 -1.39 16 8 C -0.08 -1.40 5.10 -104.62 -0.53 -1.93 16 9 C 0.11 2.18 3.15 -26.85 -0.08 2.10 16 10 H 0.07 1.29 6.18 -51.93 -0.32 0.97 16 11 C -0.15 -2.48 6.56 -24.48 -0.16 -2.64 16 12 C -0.14 -2.85 6.53 -24.78 -0.16 -3.01 16 13 C 0.21 5.13 3.36 -27.16 -0.09 5.04 16 14 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 15 C -0.55 -14.99 8.74 -34.44 -0.30 -15.29 16 16 H 0.06 1.56 7.52 -52.49 -0.39 1.16 16 17 C 0.08 2.23 5.41 -17.82 -0.10 2.14 16 18 N -0.86 -25.31 12.92 55.43 0.72 -24.59 16 19 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 O -0.35 -8.71 9.06 -35.23 -0.32 -9.03 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 26 H 0.08 0.98 6.03 -51.93 -0.31 0.67 16 27 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.15 2.78 7.36 -52.48 -0.39 2.39 16 30 H 0.07 1.11 8.05 -51.93 -0.42 0.70 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.31 7.66 -51.93 -0.40 0.91 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 288.70 15.07 4.35 4.35 Total: -1.00 -29.69 288.70 -7.69 -37.38 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.32 Total: 0.05 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -3.14 Total: -22.15 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.72 Total: -24.59 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.32 Total: -9.03 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.69 -7.69 -37.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393753216.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.551 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds