Wall clock time and date at job start Mon Mar 30 2020 06:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38223 * 119.98473 * 2 1 4 4 C 1.38446 * 119.97165 * 180.02562 * 3 2 1 5 5 F 1.35103 * 120.02080 * 179.97438 * 4 3 2 6 6 C 1.38479 * 119.94673 * 359.97438 * 4 3 2 7 7 C 1.38170 * 119.97696 * 359.74855 * 6 4 3 8 8 C 1.38224 * 119.98905 * 180.02562 * 2 1 3 9 9 C 1.50696 * 119.97292 * 359.96264 * 8 2 1 10 10 H 1.09000 * 110.27973 * 34.35491 * 9 8 2 11 11 C 1.54953 * 110.39105 * 272.21054 * 9 8 2 12 12 C 1.55310 * 100.93963 * 204.59715 * 11 9 8 13 13 C 1.54381 * 102.25377 * 34.13484 * 12 11 9 14 14 H 1.08998 * 109.90670 * 98.19827 * 13 12 11 15 15 C 1.50701 * 109.82961 * 219.13113 * 13 12 11 16 16 H 1.08002 * 119.99761 * 359.58109 * 15 13 12 17 17 C 1.37871 * 119.99694 * 179.86672 * 15 13 12 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48504 * 109.47266 * 60.00049 * 19 17 15 21 21 H 1.48504 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47383 * 299.99456 * 19 17 15 23 23 O 1.43244 * 107.58837 * 338.64002 * 13 12 11 24 24 H 1.09003 * 109.47240 * 269.97925 * 1 2 3 25 25 H 1.09000 * 109.47077 * 29.98171 * 1 2 3 26 26 H 1.08998 * 109.47087 * 149.98236 * 1 2 3 27 27 H 1.07994 * 120.01335 * 0.04290 * 3 2 1 28 28 H 1.08002 * 120.01059 * 180.02562 * 6 4 3 29 29 H 1.08003 * 119.98949 * 180.25635 * 7 6 4 30 30 H 1.08992 * 111.12559 * 322.51458 * 11 9 8 31 31 H 1.08999 * 111.11856 * 86.67899 * 11 9 8 32 32 H 1.08998 * 110.84764 * 275.94296 * 12 11 9 33 33 H 1.08999 * 110.84595 * 152.32535 * 12 11 9 34 34 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1972 0.0000 4 6 3.5822 1.1969 -0.0005 5 9 4.2584 2.3665 -0.0011 6 6 4.2732 -0.0032 -0.0005 7 6 3.5805 -1.1987 0.0053 8 6 2.1978 -1.1972 -0.0005 9 6 1.4435 -2.5018 -0.0003 10 1 0.5233 -2.4062 -0.5767 11 6 1.1256 -2.9413 1.4512 12 6 0.9794 -4.4767 1.2689 13 6 2.0141 -4.7752 0.1627 14 1 2.9392 -5.1403 0.6085 15 6 1.4629 -5.8067 -0.7878 16 1 0.4785 -6.2198 -0.6248 17 6 2.2179 -6.2272 -1.8621 18 7 3.4167 -5.7241 -2.0606 19 14 1.5379 -7.5115 -3.0359 20 1 0.2862 -7.0043 -3.6535 21 1 2.5369 -7.7887 -4.0991 22 1 1.2497 -8.7620 -2.2886 23 8 2.2627 -3.5515 -0.5391 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6577 2.1325 0.0007 28 1 5.3532 -0.0046 -0.0005 29 1 4.1192 -2.1347 0.0094 30 1 1.9495 -2.7022 2.1234 31 1 0.1938 -2.4967 1.8010 32 1 -0.0269 -4.7341 0.9386 33 1 1.2331 -5.0025 2.1894 34 1 3.9479 -6.0203 -2.8162 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393753216.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:57 Heat of formation + Delta-G solvation = -93.007625 kcal Electronic energy + Delta-G solvation = -18163.162023 eV Core-core repulsion = 15167.239934 eV Total energy + Delta-G solvation = -2995.922090 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.88465 -40.89650 -39.12284 -34.76784 -33.89393 -32.54791 -32.37028 -29.47302 -27.95305 -26.39440 -23.90997 -22.79628 -21.97897 -21.45029 -18.60030 -18.26044 -17.78503 -17.21393 -16.67649 -16.58497 -16.20374 -15.62009 -15.05836 -14.78901 -14.38880 -14.29000 -14.13590 -13.77182 -13.66757 -13.52519 -12.92925 -12.77535 -12.61612 -12.40450 -12.31136 -12.10085 -11.88879 -11.78514 -11.47272 -11.05947 -10.65671 -9.92616 -9.79910 -9.35606 -8.10771 -6.32287 0.15898 0.28747 1.41019 1.43234 1.50787 2.42084 2.57121 3.08659 3.25945 3.53658 3.80617 3.84396 3.91746 3.98655 4.20494 4.26672 4.37249 4.57702 4.69295 4.71411 4.80680 4.86784 4.90348 4.97733 5.08404 5.13779 5.17264 5.23036 5.32799 5.42743 5.58529 5.73793 5.79534 5.97236 6.21120 6.62286 7.06939 7.44959 8.95679 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.029809 B = 0.005855 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.101443 B = 4780.706783 C = 5167.119651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.053 4.053 3 C -0.152 4.152 4 C 0.083 3.917 5 F -0.145 7.145 6 C -0.166 4.166 7 C -0.079 4.079 8 C -0.099 4.099 9 C 0.105 3.895 10 H 0.069 0.931 11 C -0.129 4.129 12 C -0.137 4.137 13 C 0.198 3.802 14 H 0.001 0.999 15 C -0.563 4.563 16 H 0.063 0.937 17 C 0.023 3.977 18 N -0.903 5.903 19 Si 0.957 3.043 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.265 1.265 23 O -0.385 6.385 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.162 0.838 28 H 0.143 0.857 29 H 0.115 0.885 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.262 12.460 6.087 14.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.053 4.053 3 C -0.170 4.170 4 C 0.064 3.936 5 F -0.124 7.124 6 C -0.185 4.185 7 C -0.097 4.097 8 C -0.099 4.099 9 C 0.047 3.953 10 H 0.087 0.913 11 C -0.167 4.167 12 C -0.175 4.175 13 C 0.142 3.858 14 H 0.019 0.981 15 C -0.601 4.601 16 H 0.081 0.919 17 C -0.179 4.179 18 N -0.540 5.540 19 Si 0.781 3.219 20 H -0.195 1.195 21 H -0.212 1.212 22 H -0.189 1.189 23 O -0.305 6.305 24 H 0.112 0.888 25 H 0.108 0.892 26 H 0.086 0.914 27 H 0.180 0.820 28 H 0.160 0.840 29 H 0.133 0.867 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.934 12.516 5.820 14.659 hybrid contribution 0.418 -0.830 -0.721 1.176 sum -4.517 11.686 5.099 13.527 Atomic orbital electron populations 1.20966 0.88352 1.03999 1.04090 1.19782 0.97910 0.90492 0.97106 1.21169 0.91637 0.99813 1.04385 1.17769 0.90803 0.80802 1.04209 1.91463 1.80540 1.46170 1.94185 1.21210 1.01406 0.90961 1.04873 1.20877 0.94402 0.97546 0.96903 1.20033 0.93995 0.94818 1.01058 1.21807 0.92847 0.86163 0.94476 0.91324 1.23157 1.02923 0.95206 0.95374 1.23098 1.00048 0.95664 0.98654 1.20191 0.92781 0.83082 0.89744 0.98135 1.21807 1.02778 1.23097 1.12402 0.91878 1.25924 0.94840 0.97789 0.99324 1.70169 1.11170 1.43103 1.29570 0.85659 0.78167 0.79570 0.78468 1.19484 1.21157 1.18927 1.88704 1.63272 1.18609 1.59910 0.88751 0.89208 0.91403 0.82007 0.83951 0.86717 0.91207 0.87775 0.91049 0.90586 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 9.60 71.23 0.68 -1.69 16 2 C -0.05 -1.43 5.88 -19.87 -0.12 -1.55 16 3 C -0.15 -3.80 9.68 22.32 0.22 -3.59 16 4 C 0.08 2.37 7.30 22.38 0.16 2.53 16 5 F -0.14 -4.00 17.27 44.97 0.78 -3.22 16 6 C -0.17 -5.17 10.03 22.31 0.22 -4.94 16 7 C -0.08 -2.88 9.37 22.26 0.21 -2.68 16 8 C -0.10 -3.42 5.10 -19.86 -0.10 -3.52 16 9 C 0.10 4.06 3.15 30.51 0.10 4.16 16 10 H 0.07 2.60 6.18 -2.39 -0.01 2.59 16 11 C -0.13 -4.21 6.56 32.06 0.21 -4.00 16 12 C -0.14 -5.32 6.53 31.86 0.21 -5.11 16 13 C 0.20 10.20 3.36 30.32 0.10 10.30 16 14 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 15 C -0.56 -31.58 8.74 25.60 0.22 -31.35 16 16 H 0.06 3.37 7.52 -2.91 -0.02 3.35 16 17 C 0.02 1.32 5.41 84.65 0.46 1.78 16 18 N -0.90 -55.10 12.92 21.45 0.28 -54.82 16 19 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 23 O -0.38 -19.90 9.06 -148.98 -1.35 -21.25 16 24 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 26 H 0.07 1.53 6.03 -2.39 -0.01 1.51 16 27 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 28 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 29 H 0.11 4.81 7.36 -2.91 -0.02 4.78 16 30 H 0.07 2.24 8.05 -2.39 -0.02 2.22 16 31 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.07 2.69 7.66 -2.39 -0.02 2.67 16 33 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -66.34 288.70 5.40 -60.94 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.10 Total: 11.85 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 2.58 Total: -39.65 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.28 Total: -54.82 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.35 Total: -21.25 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.78 Total: -3.22 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -66.34 5.40 -60.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393753216.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.067 kcal (2) G-P(sol) polarization free energy of solvation -66.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds