Wall clock time and date at job start Mon Mar 30 2020 06:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38227 * 119.98603 * 2 1 4 4 C 1.38436 * 119.97437 * 180.27987 * 3 2 1 5 5 F 1.35099 * 120.02715 * 179.72403 * 4 3 2 6 6 C 1.38486 * 119.94868 * 359.48323 * 4 3 2 7 7 C 1.38173 * 119.97274 * 0.49190 * 6 4 3 8 8 C 1.38224 * 119.99193 * 180.02562 * 2 1 3 9 9 C 1.50697 * 119.97175 * 359.97438 * 8 2 1 10 10 H 1.09002 * 110.27497 * 324.30301 * 9 8 2 11 11 C 1.54945 * 110.31145 * 86.39195 * 9 8 2 12 12 C 1.55404 * 100.89638 * 155.28717 * 11 9 8 13 13 C 1.54381 * 102.31061 * 325.99507 * 12 11 9 14 14 H 1.09005 * 109.90401 * 261.72889 * 13 12 11 15 15 C 1.50693 * 109.83437 * 140.80151 * 13 12 11 16 16 H 1.08001 * 120.00081 * 0.40535 * 15 13 12 17 17 C 1.37876 * 120.00106 * 180.41260 * 15 13 12 18 18 N 1.31511 * 120.00087 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00328 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46606 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47165 * 119.99884 * 19 17 15 22 22 H 1.48495 * 109.47498 * 240.00365 * 19 17 15 23 23 O 1.43236 * 107.58774 * 21.28225 * 13 12 11 24 24 H 1.08993 * 109.47273 * 90.00714 * 1 2 3 25 25 H 1.09004 * 109.46294 * 210.00371 * 1 2 3 26 26 H 1.08996 * 109.47258 * 330.00172 * 1 2 3 27 27 H 1.08002 * 120.00881 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.00952 * 180.25350 * 6 4 3 29 29 H 1.08000 * 119.98615 * 179.76445 * 7 6 4 30 30 H 1.09003 * 111.12523 * 273.27936 * 11 9 8 31 31 H 1.09004 * 111.12129 * 37.43613 * 11 9 8 32 32 H 1.09002 * 110.88463 * 207.75358 * 12 11 9 33 33 H 1.09006 * 110.76506 * 84.17357 * 12 11 9 34 34 H 0.97005 * 119.99990 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1973 0.0000 4 6 3.5822 1.1970 -0.0059 5 9 4.2584 2.3665 -0.0115 6 6 4.2733 -0.0031 -0.0009 7 6 3.5806 -1.1986 -0.0004 8 6 2.1979 -1.1972 -0.0005 9 6 1.4436 -2.5018 -0.0005 10 1 0.5359 -2.4132 0.5965 11 6 1.0947 -2.9213 -1.4507 12 6 0.9554 -4.4603 -1.2859 13 6 2.0119 -4.7724 -0.2044 14 1 2.9283 -5.1310 -0.6734 15 6 1.4805 -5.8167 0.7432 16 1 0.4932 -6.2284 0.5946 17 6 2.2547 -6.2464 1.8001 18 7 3.4571 -5.7454 1.9809 19 14 1.5958 -7.5404 2.9752 20 1 0.2284 -7.9397 2.5555 21 1 2.4865 -8.7284 2.9535 22 1 1.5487 -6.9821 4.3505 23 8 2.2739 -3.5578 0.5081 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6577 2.1325 -0.0004 28 1 5.3533 -0.0044 -0.0013 29 1 4.1194 -2.1346 -0.0003 30 1 0.1554 -2.4727 -1.7742 31 1 1.9039 -2.6720 -2.1372 32 1 1.1909 -4.9738 -2.2180 33 1 -0.0441 -4.7229 -0.9389 34 1 4.0019 -6.0480 2.7242 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393753218.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:00 Heat of formation + Delta-G solvation = -77.127755 kcal Electronic energy + Delta-G solvation = -18164.701259 eV Core-core repulsion = 15169.467772 eV Total energy + Delta-G solvation = -2995.233487 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.69434 -39.52027 -37.56264 -32.92829 -32.52972 -30.97290 -30.83691 -27.86477 -26.76406 -24.62696 -22.43745 -21.53227 -20.28614 -20.01177 -17.06117 -16.57497 -16.42176 -15.77086 -15.41497 -14.94724 -14.52937 -14.08876 -13.69992 -13.33950 -13.20527 -13.00908 -12.71716 -12.30189 -12.16500 -11.82914 -11.73309 -11.41564 -10.93431 -10.80296 -10.62230 -10.49843 -10.37137 -10.18469 -9.83527 -9.23440 -8.65640 -8.55591 -8.23529 -7.83109 -6.00206 -4.13930 1.40470 1.50742 3.28990 3.37344 3.40216 3.82765 4.41983 4.45365 4.79220 5.01450 5.04354 5.25219 5.34299 5.39343 5.46383 5.57560 5.64615 5.75289 5.77379 5.94112 6.14181 6.16786 6.28296 6.36069 6.38699 6.45530 6.54549 6.60729 6.70016 6.80190 7.01674 7.20036 7.61589 7.87279 8.26117 8.55516 9.01725 9.58045 11.06433 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.029841 B = 0.005864 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.094928 B = 4773.916369 C = 5171.823038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.058 4.058 3 C -0.161 4.161 4 C 0.085 3.915 5 F -0.148 7.148 6 C -0.163 4.163 7 C -0.058 4.058 8 C -0.080 4.080 9 C 0.113 3.887 10 H 0.068 0.932 11 C -0.145 4.145 12 C -0.145 4.145 13 C 0.205 3.795 14 H 0.039 0.961 15 C -0.545 4.545 16 H 0.060 0.940 17 C 0.079 3.921 18 N -0.862 5.862 19 Si 0.888 3.112 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 O -0.351 6.351 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.146 0.854 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.278 10.989 -5.437 12.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.059 4.059 3 C -0.180 4.180 4 C 0.066 3.934 5 F -0.127 7.127 6 C -0.181 4.181 7 C -0.076 4.076 8 C -0.081 4.081 9 C 0.054 3.946 10 H 0.085 0.915 11 C -0.183 4.183 12 C -0.182 4.182 13 C 0.150 3.850 14 H 0.057 0.943 15 C -0.583 4.583 16 H 0.078 0.922 17 C -0.127 4.127 18 N -0.499 5.499 19 Si 0.716 3.284 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 O -0.270 6.270 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.164 0.836 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.939 11.039 -5.167 12.537 hybrid contribution -0.230 -0.435 0.610 0.783 sum -3.169 10.604 -4.557 11.969 Atomic orbital electron populations 1.20872 0.90842 1.03229 1.02497 1.19501 0.96197 0.91531 0.98641 1.20828 0.92107 0.98770 1.06299 1.17672 0.90150 0.81075 1.04466 1.91450 1.80455 1.46555 1.94241 1.21157 1.00661 0.91269 1.05058 1.21081 0.93903 0.97947 0.94653 1.20087 0.94179 0.94582 0.99208 1.21579 0.93063 0.86506 0.93450 0.91499 1.23232 1.00923 0.97378 0.96770 1.23237 1.01684 0.93318 1.00000 1.20315 0.92852 0.83119 0.88699 0.94307 1.21420 1.02221 1.21650 1.12964 0.92226 1.25050 0.94611 0.95646 0.97349 1.70031 1.09019 1.41255 1.29561 0.86623 0.79156 0.81501 0.81153 1.19707 1.20929 1.20895 1.88786 1.60558 1.17723 1.59970 0.90927 0.90468 0.91656 0.85330 0.85150 0.83643 0.91591 0.91487 0.92126 0.91491 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 9.60 36.01 0.35 -1.06 16 2 C -0.06 -0.87 5.88 -104.63 -0.62 -1.49 16 3 C -0.16 -2.28 9.68 -39.51 -0.38 -2.67 16 4 C 0.09 1.30 7.30 -39.42 -0.29 1.01 16 5 F -0.15 -2.21 17.27 2.25 0.04 -2.17 16 6 C -0.16 -2.55 10.03 -39.51 -0.40 -2.94 16 7 C -0.06 -1.03 9.37 -39.59 -0.37 -1.40 16 8 C -0.08 -1.41 5.10 -104.62 -0.53 -1.94 16 9 C 0.11 2.19 3.12 -26.86 -0.08 2.10 16 10 H 0.07 1.29 6.24 -51.93 -0.32 0.97 16 11 C -0.15 -2.48 6.57 -24.43 -0.16 -2.64 16 12 C -0.14 -2.85 6.53 -24.73 -0.16 -3.01 16 13 C 0.21 5.11 3.36 -27.16 -0.09 5.02 16 14 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 15 C -0.54 -14.94 8.75 -34.44 -0.30 -15.25 16 16 H 0.06 1.59 7.52 -52.49 -0.39 1.20 16 17 C 0.08 2.22 5.41 -17.82 -0.10 2.12 16 18 N -0.86 -25.27 12.91 55.43 0.72 -24.55 16 19 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 O -0.35 -8.70 9.01 -35.23 -0.32 -9.02 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.97 6.06 -51.93 -0.31 0.66 16 26 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 29 H 0.15 2.81 7.32 -52.49 -0.38 2.42 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.31 7.66 -51.93 -0.40 0.91 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 288.68 15.07 4.35 4.35 Total: -1.00 -29.70 288.68 -7.69 -37.40 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -4.32 Total: -0.02 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -3.14 Total: -22.14 kcal Atomic # 7 Polarization: -25.27 SS G_CDS: 0.72 Total: -24.55 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.32 Total: -9.02 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.70 -7.69 -37.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393753218.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.732 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds